Gene annotation
Transcriptome id Sobic.004G332300.1
Synonym Sb04g036100
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A194YSX8
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF158
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G45290 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g55520.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a022488 , Zm00025a032914
Brachypodium KQK01174 , KQK01175
Barley -
Wheat TraesCS6B02G395600 , TraesCS6B02G395600 , TraesCS6A02G362000 , TraesCS6A02G362000 , TraesCS6D02G345700 , TraesCS6A02G362000
Populus -


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cDNA sequences
Sobic.004G332300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G101800 expressed protein -
2 Sobic.003G355000 Transcription initiation factor TFIID subunit A containing protein, expressed K03126: transcription initiation factor TFIID subunit 12
3 Sobic.002G067800 - -
4 Sobic.003G073000 IWS1 C-terminus family protein, putative, expressed K17498: SPN1, transcription factor SPN1
5 Sobic.002G045400 MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
6 Sobic.002G001600 MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
7 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
8 Sobic.010G194700 ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed -
9 Sobic.001G206100 expressed protein -
10 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
11 Sobic.001G222300 cyclin-dependent kinase inhibitor, putative, expressed -
12 Sobic.008G073000 expressed protein -
13 Sobic.007G037100 MYB family transcription factor, putative, expressed -
14 Sobic.003G298100 one zinc finger protein, putative, expressed -
15 Sobic.007G043500 DNA topoisomerase 1, putative, expressed K03163: DNA topoisomerase I
16 Sobic.007G078000 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
17 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
18 Sobic.004G257400 WD-40 repeat family protein, putative, expressed -
19 Sobic.005G059100 bromodomain domain containing protein, expressed -
20 Sobic.005G030300 protein kinase PKN/PRK1, effector, putative, expressed -


Gene co-expression network
sample Sobic004G332300 Sobic004G332300 Sobic008G101800 Sobic008G101800 Sobic004G332300--Sobic008G101800 Sobic003G355000 Sobic003G355000 Sobic004G332300--Sobic003G355000 Sobic002G067800 Sobic002G067800 Sobic004G332300--Sobic002G067800 Sobic003G073000 Sobic003G073000 Sobic004G332300--Sobic003G073000 Sobic002G045400 Sobic002G045400 Sobic004G332300--Sobic002G045400 Sobic002G001600 Sobic002G001600 Sobic004G332300--Sobic002G001600 Sobic007G185900 Sobic007G185900 Sobic004G332300--Sobic007G185900 Sobic010G194700 Sobic010G194700 Sobic004G332300--Sobic010G194700 Sobic001G206100 Sobic001G206100 Sobic004G332300--Sobic001G206100 Sobic008G101800--Sobic002G001600 Sobic008G073000 Sobic008G073000 Sobic008G101800--Sobic008G073000 Sobic001G222300 Sobic001G222300 Sobic008G101800--Sobic001G222300 Sobic008G101800--Sobic001G206100 Sobic005G162600 Sobic005G162600 Sobic008G101800--Sobic005G162600 Sobic008G116500 Sobic008G116500 Sobic008G101800--Sobic008G116500 Sobic008G101800--Sobic004G332300 Sobic008G101800--Sobic007G185900 Sobic008G101800--Sobic002G045400 Sobic009G198100 Sobic009G198100 Sobic003G355000--Sobic009G198100 Sobic002G034600 Sobic002G034600 Sobic003G355000--Sobic002G034600 Sobic003G355000--Sobic002G045400 Sobic003G433500 Sobic003G433500 Sobic003G355000--Sobic003G433500 Sobic008G174300 Sobic008G174300 Sobic003G355000--Sobic008G174300 Sobic001G517500 Sobic001G517500 Sobic003G355000--Sobic001G517500 Sobic007G118200 Sobic007G118200 Sobic003G355000--Sobic007G118200 Sobic010G033400 Sobic010G033400 Sobic003G355000--Sobic010G033400 Sobic001G497900 Sobic001G497900 Sobic003G355000--Sobic001G497900 Sobic002G067800--Sobic010G194700 Sobic008G165100 Sobic008G165100 Sobic002G067800--Sobic008G165100 Sobic005G059100 Sobic005G059100 Sobic002G067800--Sobic005G059100 Sobic002G095700 Sobic002G095700 Sobic002G067800--Sobic002G095700 Sobic002G067800--Sobic008G073000 Sobic002G159200 Sobic002G159200 Sobic002G067800--Sobic002G159200 Sobic002G067800--Sobic003G355000 Sobic007G043500 Sobic007G043500 Sobic002G067800--Sobic007G043500 Sobic006G123900 Sobic006G123900 Sobic002G067800--Sobic006G123900 Sobic003G073000--Sobic001G206100 Sobic004G257400 Sobic004G257400 Sobic003G073000--Sobic004G257400 Sobic004G041500 Sobic004G041500 Sobic003G073000--Sobic004G041500 Sobic003G073000--Sobic007G185900 Sobic006G186400 Sobic006G186400 Sobic003G073000--Sobic006G186400 Sobic004G349900 Sobic004G349900 Sobic003G073000--Sobic004G349900 Sobic001G408700 Sobic001G408700 Sobic003G073000--Sobic001G408700 Sobic003G073000--Sobic001G517500 Sobic001G251700 Sobic001G251700 Sobic003G073000--Sobic001G251700 Sobic002G045400--Sobic008G073000 Sobic002G045400--Sobic003G355000 Sobic002G045400--Sobic003G433500 Sobic002G045400--Sobic008G174300 Sobic002G045400--Sobic008G101800 Sobic002G045400--Sobic009G198100 Sobic009G216000 Sobic009G216000 Sobic002G045400--Sobic009G216000 Sobic010G202600 Sobic010G202600 Sobic002G045400--Sobic010G202600 Sobic005G030300 Sobic005G030300 Sobic002G045400--Sobic005G030300 Sobic002G001600--Sobic008G116500 Sobic001G543900 Sobic001G543900 Sobic002G001600--Sobic001G543900 Sobic002G313300 Sobic002G313300 Sobic002G001600--Sobic002G313300 Sobic002G001600--Sobic008G101800 Sobic002G001600--Sobic007G185900 Sobic002G166700 Sobic002G166700 Sobic002G001600--Sobic002G166700 Sobic008G106000 Sobic008G106000 Sobic002G001600--Sobic008G106000 Sobic007G037100 Sobic007G037100 Sobic002G001600--Sobic007G037100 Sobic002G166600 Sobic002G166600 Sobic002G001600--Sobic002G166600 Sobic004G196700 Sobic004G196700 Sobic007G185900--Sobic004G196700 Sobic002G157300 Sobic002G157300 Sobic007G185900--Sobic002G157300 Sobic007G078000 Sobic007G078000 Sobic007G185900--Sobic007G078000 Sobic010G260500 Sobic010G260500 Sobic007G185900--Sobic010G260500 Sobic007G185900--Sobic002G313300 Sobic008G054500 Sobic008G054500 Sobic007G185900--Sobic008G054500 Sobic003G397800 Sobic003G397800 Sobic007G185900--Sobic003G397800 Sobic005G149500 Sobic005G149500 Sobic007G185900--Sobic005G149500 Sobic003G187400 Sobic003G187400 Sobic007G185900--Sobic003G187400 Sobic010G194700--Sobic002G067800 Sobic010G194700--Sobic001G206100 Sobic010G194700--Sobic008G165100 Sobic002G151600 Sobic002G151600 Sobic010G194700--Sobic002G151600 Sobic004G213000 Sobic004G213000 Sobic010G194700--Sobic004G213000 Sobic010G194700--Sobic005G059100 Sobic006G013500 Sobic006G013500 Sobic010G194700--Sobic006G013500 Sobic005G079800 Sobic005G079800 Sobic010G194700--Sobic005G079800 Sobic003G197800 Sobic003G197800 Sobic010G194700--Sobic003G197800 Sobic001G257300 Sobic001G257300 Sobic001G206100--Sobic001G257300 Sobic001G206100--Sobic006G013500 Sobic002G320500 Sobic002G320500 Sobic001G206100--Sobic002G320500 Sobic006G080300 Sobic006G080300 Sobic001G206100--Sobic006G080300 Sobic002G157000 Sobic002G157000 Sobic001G206100--Sobic002G157000 Sobic009G000500 Sobic009G000500 Sobic001G206100--Sobic009G000500 Sobic001G206100--Sobic004G213000 Sobic001G356500 Sobic001G356500 Sobic001G206100--Sobic001G356500 Sobic002G161000 Sobic002G161000 Sobic001G206100--Sobic002G161000
Octagon: transcription factors


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