Gene annotation
Transcriptome id Sobic.002G045400.3,Sobic.002G045400.7,Sobic.002G045400.2,Sobic.002G045400.5,Sobic.002G045400.6,Sobic.002G045400.4
Synonym Sb02g003880, ATBPM4, BPM4
Functional annotation MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed
UniProt A0A1B6Q961 , A0A1W0W294 , A0A1B6Q976 , A0A1B6Q986
Pfam PF00651
Panther DB PTHR24411 PTHR24411:SF35
NCBI CDD KOG1987; Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains
KEGG Orthology K10523; speckle-type POZ protein
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G03740 : BTB-POZ and MATH domain 4
RAP-DB (Rice) LOC_Os07g07270.2,LOC_Os07g07270.1 : MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed
MaizeGDB (Corn) Zm00025a016593 , Zm00025a045098
Brachypodium KQK21260 , KQK20728 , KQK20727 , PNT77233 , KQK12802 , PNT73989
Barley HORVU2Hr1G055140.1 , HORVU2Hr1G055140.2 , HORVU5Hr1G104190.1
Wheat TraesCS5D02G437400 , TraesCS2A02G237800 , TraesCS2B02G262200 , TraesCS2B02G262200 , TraesCS2D02G246900 , TraesCS5A02G429400 , TraesCS5A02G429400 , TraesCS5B02G431400 , TraesCS5B02G431400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G045400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G073000 expressed protein -
2 Sobic.003G355000 Transcription initiation factor TFIID subunit A containing protein, expressed K03126: transcription initiation factor TFIID subunit 12
3 Sobic.003G433500 Putative splicing factor(PubMedID : 24356560)@serine/arginine repetitive matrix protein 1, putative, expressed K14325: RNA-binding protein with serine-rich domain 1
4 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
5 Sobic.008G101800 expressed protein -
6 Sobic.009G198100 expressed protein -
7 Sobic.009G216000 mov34 family protein, putative, expressed K11864: BRCC3, BRCA1/BRCA2-containing complex subunit 3
8 Sobic.010G202600 zinc finger, C3HC4 type domain containing protein, expressed K10661: MARCH6, E3 ubiquitin-protein ligase MARCH6
9 Sobic.005G030300 protein kinase PKN/PRK1, effector, putative, expressed -
10 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
11 Sobic.002G329300 basic helix-loop-helix DND-binding domain containing protein, expressed -
12 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
13 Sobic.001G083600 26S proteasome non-ATPase regulatory subunit 10, putative, expressed K06694: 26S proteasome non-ATPase regulatory subunit 10
14 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
15 Sobic.010G269600 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
16 Sobic.008G165100 G-patch domain containing protein, putative, expressed K13103: tuftelin-interacting protein 11
17 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
18 Sobic.009G195200 ESP1, putative, expressed -
19 Sobic.007G117100 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
20 Sobic.001G131800 expressed protein K15186: ELL-associated factor


Gene co-expression network
sample Sobic002G045400 Sobic002G045400 Sobic008G073000 Sobic008G073000 Sobic002G045400--Sobic008G073000 Sobic003G355000 Sobic003G355000 Sobic002G045400--Sobic003G355000 Sobic003G433500 Sobic003G433500 Sobic002G045400--Sobic003G433500 Sobic008G174300 Sobic008G174300 Sobic002G045400--Sobic008G174300 Sobic008G101800 Sobic008G101800 Sobic002G045400--Sobic008G101800 Sobic009G198100 Sobic009G198100 Sobic002G045400--Sobic009G198100 Sobic009G216000 Sobic009G216000 Sobic002G045400--Sobic009G216000 Sobic010G202600 Sobic010G202600 Sobic002G045400--Sobic010G202600 Sobic005G030300 Sobic005G030300 Sobic002G045400--Sobic005G030300 Sobic008G073000--Sobic005G030300 Sobic008G073000--Sobic002G045400 Sobic002G095700 Sobic002G095700 Sobic008G073000--Sobic002G095700 Sobic008G073000--Sobic008G101800 Sobic001G202266 Sobic001G202266 Sobic008G073000--Sobic001G202266 Sobic006G278200 Sobic006G278200 Sobic008G073000--Sobic006G278200 Sobic008G165100 Sobic008G165100 Sobic008G073000--Sobic008G165100 Sobic010G174800 Sobic010G174800 Sobic008G073000--Sobic010G174800 Sobic002G067800 Sobic002G067800 Sobic008G073000--Sobic002G067800 Sobic003G355000--Sobic009G198100 Sobic002G034600 Sobic002G034600 Sobic003G355000--Sobic002G034600 Sobic003G355000--Sobic002G045400 Sobic003G355000--Sobic003G433500 Sobic003G355000--Sobic008G174300 Sobic001G517500 Sobic001G517500 Sobic003G355000--Sobic001G517500 Sobic007G118200 Sobic007G118200 Sobic003G355000--Sobic007G118200 Sobic010G033400 Sobic010G033400 Sobic003G355000--Sobic010G033400 Sobic001G497900 Sobic001G497900 Sobic003G355000--Sobic001G497900 Sobic009G195200 Sobic009G195200 Sobic003G433500--Sobic009G195200 Sobic003G433500--Sobic003G355000 Sobic003G433500--Sobic002G045400 Sobic003G433500--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic003G433500--Sobic003G354100 Sobic006G267300 Sobic006G267300 Sobic003G433500--Sobic006G267300 Sobic006G248500 Sobic006G248500 Sobic003G433500--Sobic006G248500 Sobic002G362300 Sobic002G362300 Sobic003G433500--Sobic002G362300 Sobic002G259800 Sobic002G259800 Sobic003G433500--Sobic002G259800 Sobic001G131800 Sobic001G131800 Sobic008G174300--Sobic001G131800 Sobic010G260500 Sobic010G260500 Sobic008G174300--Sobic010G260500 Sobic008G174300--Sobic010G033400 Sobic003G081000 Sobic003G081000 Sobic008G174300--Sobic003G081000 Sobic008G174300--Sobic007G118200 Sobic004G263900 Sobic004G263900 Sobic008G174300--Sobic004G263900 Sobic008G174300--Sobic009G198100 Sobic008G174300--Sobic003G355000 Sobic003G359300 Sobic003G359300 Sobic008G174300--Sobic003G359300 Sobic002G001600 Sobic002G001600 Sobic008G101800--Sobic002G001600 Sobic008G101800--Sobic008G073000 Sobic001G222300 Sobic001G222300 Sobic008G101800--Sobic001G222300 Sobic001G206100 Sobic001G206100 Sobic008G101800--Sobic001G206100 Sobic005G162600 Sobic005G162600 Sobic008G101800--Sobic005G162600 Sobic008G116500 Sobic008G116500 Sobic008G101800--Sobic008G116500 Sobic004G332300 Sobic004G332300 Sobic008G101800--Sobic004G332300 Sobic007G185900 Sobic007G185900 Sobic008G101800--Sobic007G185900 Sobic008G101800--Sobic002G045400 Sobic009G198100--Sobic007G118200 Sobic009G198100--Sobic002G034600 Sobic009G198100--Sobic010G033400 Sobic009G198100--Sobic003G355000 Sobic009G198100--Sobic003G081000 Sobic009G198100--Sobic008G174300 Sobic009G198100--Sobic001G131800 Sobic009G198100--Sobic003G359300 Sobic007G205000 Sobic007G205000 Sobic009G198100--Sobic007G205000 Sobic009G216000--Sobic003G433500 Sobic009G216000--Sobic003G355000 Sobic009G216000--Sobic002G045400 Sobic009G216000--Sobic005G030300 Sobic001G371000 Sobic001G371000 Sobic009G216000--Sobic001G371000 Sobic004G013600 Sobic004G013600 Sobic009G216000--Sobic004G013600 Sobic009G216000--Sobic009G198100 Sobic009G216000--Sobic002G362300 Sobic006G261100 Sobic006G261100 Sobic009G216000--Sobic006G261100 Sobic007G111100 Sobic007G111100 Sobic010G202600--Sobic007G111100 Sobic001G469800 Sobic001G469800 Sobic010G202600--Sobic001G469800 Sobic010G202600--Sobic001G131800 Sobic003G185200 Sobic003G185200 Sobic010G202600--Sobic003G185200 Sobic003G205501 Sobic003G205501 Sobic010G202600--Sobic003G205501 Sobic010G202600--Sobic006G267300 Sobic009G000500 Sobic009G000500 Sobic010G202600--Sobic009G000500 Sobic010G202600--Sobic008G174300 Sobic010G202600--Sobic003G081000 Sobic005G030300--Sobic008G073000 Sobic005G030300--Sobic008G165100 Sobic005G030300--Sobic002G095700 Sobic005G030300--Sobic003G433500 Sobic005G030300--Sobic002G045400 Sobic005G030300--Sobic006G278200 Sobic005G030300--Sobic008G101800 Sobic005G030300--Sobic002G362300 Sobic009G022100 Sobic009G022100 Sobic005G030300--Sobic009G022100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.