Gene annotation
Transcriptome id Sobic.002G329300.2
Synonym ILR3, bHLH105, Sb02g035580
Functional annotation basic helix-loop-helix DND-binding domain containing protein, expressed
UniProt C5XAT2
Pfam PF00010
Panther DB PTHR23042 PTHR23042:SF67
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G54680 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os07g35870.1 : basic helix-loop-helix DND-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048304
Brachypodium KQJ94998
Barley -
Wheat TraesCS2A02G215600 , TraesCS2B02G240600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G329300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G045400 MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
2 Sobic.001G309100 zinc knuckle domain containing protein, expressed K09250: cellular nucleic acid-binding protein
3 Sobic.008G073000 expressed protein -
4 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
5 Sobic.003G433500 Putative splicing factor(PubMedID : 24356560)@serine/arginine repetitive matrix protein 1, putative, expressed K14325: RNA-binding protein with serine-rich domain 1
6 Sobic.002G362300 prefoldin, putative, expressed -
7 Sobic.005G030300 protein kinase PKN/PRK1, effector, putative, expressed -
8 Sobic.008G165100 G-patch domain containing protein, putative, expressed K13103: tuftelin-interacting protein 11
9 Sobic.003G136800 SNF7 domain containing protein, putative, expressed K15053: charged multivesicular body protein 7
10 Sobic.002G095700 C2-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C2 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
11 Sobic.010G269600 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
12 Sobic.001G083600 26S proteasome non-ATPase regulatory subunit 10, putative, expressed K06694: 26S proteasome non-ATPase regulatory subunit 10
13 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
14 Sobic.003G074000 expressed protein K12593: MPHOSPH6, M-phase phosphoprotein 6, animal type
15 Sobic.003G420700 expressed protein -
16 Sobic.003G437500 syntaxin 6, putative, expressed -
17 Sobic.007G117100 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
18 Sobic.002G089900 OsFBX237 - F-box domain containing protein, expressed -
19 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
20 Sobic.007G002900 C3-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C3 subfamily conserved sequence, expressed K10523: speckle-type POZ protein


Gene co-expression network
sample Sobic002G329300 Sobic002G329300 Sobic002G045400 Sobic002G045400 Sobic002G329300--Sobic002G045400 Sobic001G309100 Sobic001G309100 Sobic002G329300--Sobic001G309100 Sobic008G073000 Sobic008G073000 Sobic002G329300--Sobic008G073000 Sobic001G038100 Sobic001G038100 Sobic002G329300--Sobic001G038100 Sobic003G433500 Sobic003G433500 Sobic002G329300--Sobic003G433500 Sobic002G362300 Sobic002G362300 Sobic002G329300--Sobic002G362300 Sobic005G030300 Sobic005G030300 Sobic002G329300--Sobic005G030300 Sobic008G165100 Sobic008G165100 Sobic002G329300--Sobic008G165100 Sobic003G136800 Sobic003G136800 Sobic002G329300--Sobic003G136800 Sobic002G045400--Sobic008G073000 Sobic003G355000 Sobic003G355000 Sobic002G045400--Sobic003G355000 Sobic002G045400--Sobic003G433500 Sobic008G174300 Sobic008G174300 Sobic002G045400--Sobic008G174300 Sobic008G101800 Sobic008G101800 Sobic002G045400--Sobic008G101800 Sobic009G198100 Sobic009G198100 Sobic002G045400--Sobic009G198100 Sobic009G216000 Sobic009G216000 Sobic002G045400--Sobic009G216000 Sobic010G202600 Sobic010G202600 Sobic002G045400--Sobic010G202600 Sobic002G045400--Sobic005G030300 Sobic001G309100--Sobic001G038100 Sobic003G024800 Sobic003G024800 Sobic001G309100--Sobic003G024800 Sobic003G101300 Sobic003G101300 Sobic001G309100--Sobic003G101300 Sobic003G189900 Sobic003G189900 Sobic001G309100--Sobic003G189900 Sobic001G390500 Sobic001G390500 Sobic001G309100--Sobic001G390500 Sobic010G071200 Sobic010G071200 Sobic001G309100--Sobic010G071200 Sobic003G437500 Sobic003G437500 Sobic001G309100--Sobic003G437500 Sobic001G350501 Sobic001G350501 Sobic001G309100--Sobic001G350501 Sobic007G117100 Sobic007G117100 Sobic001G309100--Sobic007G117100 Sobic008G073000--Sobic005G030300 Sobic008G073000--Sobic002G045400 Sobic002G095700 Sobic002G095700 Sobic008G073000--Sobic002G095700 Sobic008G073000--Sobic008G101800 Sobic001G202266 Sobic001G202266 Sobic008G073000--Sobic001G202266 Sobic006G278200 Sobic006G278200 Sobic008G073000--Sobic006G278200 Sobic008G073000--Sobic008G165100 Sobic010G174800 Sobic010G174800 Sobic008G073000--Sobic010G174800 Sobic002G067800 Sobic002G067800 Sobic008G073000--Sobic002G067800 Sobic002G204000 Sobic002G204000 Sobic001G038100--Sobic002G204000 Sobic001G038100--Sobic001G309100 Sobic001G507400 Sobic001G507400 Sobic001G038100--Sobic001G507400 Sobic006G120800 Sobic006G120800 Sobic001G038100--Sobic006G120800 Sobic001G038100--Sobic007G117100 Sobic003G420700 Sobic003G420700 Sobic001G038100--Sobic003G420700 Sobic004G186000 Sobic004G186000 Sobic001G038100--Sobic004G186000 Sobic006G261100 Sobic006G261100 Sobic001G038100--Sobic006G261100 Sobic004G260400 Sobic004G260400 Sobic001G038100--Sobic004G260400 Sobic009G195200 Sobic009G195200 Sobic003G433500--Sobic009G195200 Sobic003G433500--Sobic003G355000 Sobic003G433500--Sobic002G045400 Sobic003G433500--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic003G433500--Sobic003G354100 Sobic006G267300 Sobic006G267300 Sobic003G433500--Sobic006G267300 Sobic006G248500 Sobic006G248500 Sobic003G433500--Sobic006G248500 Sobic003G433500--Sobic002G362300 Sobic002G259800 Sobic002G259800 Sobic003G433500--Sobic002G259800 Sobic005G009200 Sobic005G009200 Sobic002G362300--Sobic005G009200 Sobic001G371000 Sobic001G371000 Sobic002G362300--Sobic001G371000 Sobic002G362300--Sobic003G433500 Sobic005G229000 Sobic005G229000 Sobic002G362300--Sobic005G229000 Sobic002G362300--Sobic008G073000 Sobic009G030300 Sobic009G030300 Sobic002G362300--Sobic009G030300 Sobic002G362300--Sobic002G095700 Sobic002G362300--Sobic005G030300 Sobic009G044900 Sobic009G044900 Sobic002G362300--Sobic009G044900 Sobic005G030300--Sobic008G073000 Sobic005G030300--Sobic008G165100 Sobic005G030300--Sobic002G095700 Sobic005G030300--Sobic003G433500 Sobic005G030300--Sobic002G045400 Sobic005G030300--Sobic006G278200 Sobic005G030300--Sobic008G101800 Sobic005G030300--Sobic002G362300 Sobic009G022100 Sobic009G022100 Sobic005G030300--Sobic009G022100 Sobic008G165100--Sobic002G067800 Sobic010G194700 Sobic010G194700 Sobic008G165100--Sobic010G194700 Sobic008G165100--Sobic008G073000 Sobic008G165100--Sobic005G030300 Sobic008G165100--Sobic002G095700 Sobic006G123900 Sobic006G123900 Sobic008G165100--Sobic006G123900 Sobic002G151600 Sobic002G151600 Sobic008G165100--Sobic002G151600 Sobic008G165100--Sobic003G433500 Sobic008G165100--Sobic002G045400 Sobic003G136800--Sobic002G151600 Sobic008G034600 Sobic008G034600 Sobic003G136800--Sobic008G034600 Sobic010G263800 Sobic010G263800 Sobic003G136800--Sobic010G263800 Sobic009G045700 Sobic009G045700 Sobic003G136800--Sobic009G045700 Sobic007G094801 Sobic007G094801 Sobic003G136800--Sobic007G094801 Sobic003G197800 Sobic003G197800 Sobic003G136800--Sobic003G197800 Sobic002G124200 Sobic002G124200 Sobic003G136800--Sobic002G124200 Sobic007G205800 Sobic007G205800 Sobic003G136800--Sobic007G205800 Sobic001G428000 Sobic001G428000 Sobic003G136800--Sobic001G428000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.