Gene annotation
Transcriptome id Sobic.003G136800.2,Sobic.003G136800.1
Synonym Sb03g011650
Functional annotation SNF7 domain containing protein, putative, expressed
UniProt A0A1W0VX71 , C5XHY8
Pfam PF03357
Panther DB PTHR22761 PTHR22761:SF7
NCBI CDD KOG2911; Uncharacterized conserved protein
KEGG Orthology K15053; charged multivesicular body protein 7
Gene Ontology GO:0007034; vacuolar transport


Orthologs (automatic annotation)
TAIR AT3G62080 : SNF7 family protein
RAP-DB (Rice) LOC_Os01g18280.1 : SNF7 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a024215
Brachypodium KQK03995
Barley HORVU3Hr1G030490.28 , HORVU3Hr1G030490.29 , HORVU3Hr1G030490.14 , HORVU3Hr1G030490.20 , HORVU3Hr1G030490.21 , HORVU3Hr1G030490.22 , HORVU3Hr1G030490.23 , HORVU3Hr1G030490.24 , HORVU3Hr1G030490.25 , HORVU3Hr1G030490.26 , HORVU3Hr1G030490.27 , HORVU3Hr1G030490.30 , HORVU3Hr1G030490.9 , HORVU3Hr1G030490.8 , HORVU3Hr1G030490.1 , HORVU3Hr1G030490.3 , HORVU3Hr1G030490.2 , HORVU3Hr1G030490.5 , HORVU3Hr1G030490.4 , HORVU3Hr1G030490.7 , HORVU3Hr1G030490.6 , HORVU3Hr1G030490.19 , HORVU3Hr1G030490.18 , HORVU3Hr1G030490.15 , HORVU3Hr1G030490.32 , HORVU3Hr1G030490.31 , HORVU3Hr1G030490.16 , HORVU3Hr1G030490.11 , HORVU3Hr1G030490.10 , HORVU3Hr1G030490.13 , HORVU3Hr1G030490.12 , HORVU3Hr1G030490.17
Wheat TraesCS3A02G150100 , TraesCS3A02G150100 , TraesCS3A02G150100 , TraesCS3B02G177100 , TraesCS3B02G177100 , TraesCS3B02G177100 , TraesCS3D02G158000 , TraesCS3D02G158000 , TraesCS3D02G158000 , TraesCS3D02G158000
Populus -


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cDNA sequences
Sobic.003G136800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G151600 R-interacting factor 1, putative, expressed -
2 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
3 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
4 Sobic.009G045700 E3 ubiquitin-protein ligase SINA-like, putative, expressed K04506: E3 ubiquitin-protein ligase SIAH1
5 Sobic.007G094801 - -
6 Sobic.003G197800 peptidyl-prolyl cis-trans isomerase, putative, expressed K12737: peptidyl-prolyl cis-trans isomerase SDCCAG10
7 Sobic.002G124200 expressed protein -
8 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
9 Sobic.001G428000 uncharacterized TPR repeat-containing protein, putative, expressed -
10 Sobic.008G136200 spotted leaf 11, putative, expressed -
11 Sobic.002G329300 basic helix-loop-helix DND-binding domain containing protein, expressed -
12 Sobic.006G076300 RING-H2 finger protein, putative, expressed K19040: E3 ubiquitin-protein ligase ATL10/75/76/77/78
13 Sobic.003G201750 - -
14 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
15 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
16 Sobic.002G077200 expressed protein -
17 Sobic.003G202800 holocarboxylase synthetase, putative, expressed -
18 Sobic.003G346000 IQ calmodulin-binding motif domain containing protein, expressed -
19 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
20 Sobic.002G186000 CD2-binding protein-related, putative, expressed K13099: CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2


Gene co-expression network
sample Sobic003G136800 Sobic003G136800 Sobic002G151600 Sobic002G151600 Sobic003G136800--Sobic002G151600 Sobic008G034600 Sobic008G034600 Sobic003G136800--Sobic008G034600 Sobic010G263800 Sobic010G263800 Sobic003G136800--Sobic010G263800 Sobic009G045700 Sobic009G045700 Sobic003G136800--Sobic009G045700 Sobic007G094801 Sobic007G094801 Sobic003G136800--Sobic007G094801 Sobic003G197800 Sobic003G197800 Sobic003G136800--Sobic003G197800 Sobic002G124200 Sobic002G124200 Sobic003G136800--Sobic002G124200 Sobic007G205800 Sobic007G205800 Sobic003G136800--Sobic007G205800 Sobic001G428000 Sobic001G428000 Sobic003G136800--Sobic001G428000 Sobic002G157000 Sobic002G157000 Sobic002G151600--Sobic002G157000 Sobic002G151600--Sobic003G197800 Sobic002G320500 Sobic002G320500 Sobic002G151600--Sobic002G320500 Sobic002G313300 Sobic002G313300 Sobic002G151600--Sobic002G313300 Sobic009G000500 Sobic009G000500 Sobic002G151600--Sobic009G000500 Sobic001G094000 Sobic001G094000 Sobic002G151600--Sobic001G094000 Sobic009G065100 Sobic009G065100 Sobic002G151600--Sobic009G065100 Sobic002G248400 Sobic002G248400 Sobic002G151600--Sobic002G248400 Sobic001G303675 Sobic001G303675 Sobic002G151600--Sobic001G303675 Sobic008G034600--Sobic007G205800 Sobic007G011400 Sobic007G011400 Sobic008G034600--Sobic007G011400 Sobic008G034600--Sobic010G263800 Sobic004G271900 Sobic004G271900 Sobic008G034600--Sobic004G271900 Sobic008G117200 Sobic008G117200 Sobic008G034600--Sobic008G117200 Sobic002G421700 Sobic002G421700 Sobic008G034600--Sobic002G421700 Sobic009G022200 Sobic009G022200 Sobic008G034600--Sobic009G022200 Sobic007G224900 Sobic007G224900 Sobic008G034600--Sobic007G224900 Sobic003G346000 Sobic003G346000 Sobic008G034600--Sobic003G346000 Sobic006G009400 Sobic006G009400 Sobic010G263800--Sobic006G009400 Sobic010G263800--Sobic007G011400 Sobic002G077200 Sobic002G077200 Sobic010G263800--Sobic002G077200 Sobic010G263800--Sobic002G313300 Sobic002G157300 Sobic002G157300 Sobic010G263800--Sobic002G157300 Sobic010G263800--Sobic007G205800 Sobic009G117400 Sobic009G117400 Sobic010G263800--Sobic009G117400 Sobic001G347600 Sobic001G347600 Sobic010G263800--Sobic001G347600 Sobic010G263800--Sobic008G034600 Sobic002G051450 Sobic002G051450 Sobic009G045700--Sobic002G051450 Sobic009G045700--Sobic006G009400 Sobic006G262200 Sobic006G262200 Sobic009G045700--Sobic006G262200 Sobic009G004700 Sobic009G004700 Sobic009G045700--Sobic009G004700 Sobic009G045700--Sobic010G263800 Sobic010G144100 Sobic010G144100 Sobic009G045700--Sobic010G144100 Sobic009G045700--Sobic008G034600 Sobic002G144966 Sobic002G144966 Sobic009G045700--Sobic002G144966 Sobic008G153600 Sobic008G153600 Sobic009G045700--Sobic008G153600 Sobic010G074500 Sobic010G074500 Sobic007G094801--Sobic010G074500 Sobic007G094801--Sobic010G263800 Sobic007G094801--Sobic007G011400 Sobic007G094801--Sobic008G034600 Sobic006G129700 Sobic006G129700 Sobic007G094801--Sobic006G129700 Sobic003G315332 Sobic003G315332 Sobic007G094801--Sobic003G315332 Sobic007G094801--Sobic007G205800 Sobic007G191100 Sobic007G191100 Sobic007G094801--Sobic007G191100 Sobic004G143700 Sobic004G143700 Sobic007G094801--Sobic004G143700 Sobic003G197800--Sobic002G157000 Sobic003G197800--Sobic002G320500 Sobic002G186000 Sobic002G186000 Sobic003G197800--Sobic002G186000 Sobic003G197800--Sobic002G151600 Sobic006G133800 Sobic006G133800 Sobic003G197800--Sobic006G133800 Sobic003G197800--Sobic009G065100 Sobic003G173950 Sobic003G173950 Sobic003G197800--Sobic003G173950 Sobic003G197800--Sobic002G248400 Sobic001G206100 Sobic001G206100 Sobic003G197800--Sobic001G206100 Sobic007G142050 Sobic007G142050 Sobic002G124200--Sobic007G142050 Sobic005G001900 Sobic005G001900 Sobic002G124200--Sobic005G001900 Sobic003G089650 Sobic003G089650 Sobic002G124200--Sobic003G089650 Sobic004G169501 Sobic004G169501 Sobic002G124200--Sobic004G169501 Sobic002G124200--Sobic003G315332 Sobic002G181450 Sobic002G181450 Sobic002G124200--Sobic002G181450 Sobic002G124200--Sobic010G263800 Sobic002G124200--Sobic007G094801 Sobic002G182300 Sobic002G182300 Sobic002G124200--Sobic002G182300 Sobic007G205800--Sobic007G011400 Sobic009G087800 Sobic009G087800 Sobic007G205800--Sobic009G087800 Sobic007G205800--Sobic010G263800 Sobic007G205800--Sobic008G034600 Sobic007G205800--Sobic004G271900 Sobic007G205800--Sobic009G022200 Sobic003G093600 Sobic003G093600 Sobic007G205800--Sobic003G093600 Sobic003G258400 Sobic003G258400 Sobic007G205800--Sobic003G258400 Sobic007G205800--Sobic002G077200 Sobic002G089900 Sobic002G089900 Sobic001G428000--Sobic002G089900 Sobic003G163100 Sobic003G163100 Sobic001G428000--Sobic003G163100 Sobic001G428000--Sobic003G136800 Sobic002G157200 Sobic002G157200 Sobic001G428000--Sobic002G157200 Sobic004G078100 Sobic004G078100 Sobic001G428000--Sobic004G078100 Sobic001G428000--Sobic008G117200 Sobic002G058300 Sobic002G058300 Sobic001G428000--Sobic002G058300 Sobic001G428000--Sobic008G034600 Sobic003G437500 Sobic003G437500 Sobic001G428000--Sobic003G437500
Octagon: transcription factors


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