Gene annotation
Transcriptome id Sobic.001G428000.1
Synonym Sb01g040210
Functional annotation uncharacterized TPR repeat-containing protein, putative, expressed
UniProt C5WQ60
Pfam PF14559 PF13414 PF07719
Panther DB PTHR23083 PTHR23083:SF380
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G05150 : Calcium-binding tetratricopeptide family protein
RAP-DB (Rice) LOC_Os03g15740.1 : uncharacterized TPR repeat-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a052802 , Zm00025a001710
Brachypodium KQK22445
Barley HORVU4Hr1G061170.3 , HORVU4Hr1G061170.2 , HORVU4Hr1G061170.1
Wheat -
Populus -


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cDNA sequences
Sobic.001G428000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G089900 OsFBX237 - F-box domain containing protein, expressed -
2 Sobic.003G163100 expressed protein K08819: cyclin-dependent kinase 12/13
3 Sobic.003G136800 SNF7 domain containing protein, putative, expressed K15053: charged multivesicular body protein 7
4 Sobic.002G157200 expressed protein -
5 Sobic.004G078100 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
6 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
7 Sobic.002G058300 ES43 protein, putative, expressed -
8 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
9 Sobic.003G437500 syntaxin 6, putative, expressed -
10 Sobic.007G225800 NOL1/NOP2/sun family protein, putative, expressed K15335: NSUN2, tRNA (cytosine34-C5)-methyltransferase
11 Sobic.001G045700 "CESA3-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA2 - cellulose synthase, expressed K10999: cellulose synthase A
12 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
13 Sobic.009G044900 serine/threonine-protein phosphatase 2A regulatory subunit B subunitgamma, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
14 Sobic.003G023400 SCAR-like protein 2, putative, expressed -
15 Sobic.003G202800 holocarboxylase synthetase, putative, expressed -
16 Sobic.002G061400 OsFBX237 - F-box domain containing protein, expressed -
17 Sobic.002G186000 CD2-binding protein-related, putative, expressed K13099: CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2
18 Sobic.007G188900 AP2 domain containing protein, expressed -
19 Sobic.006G191400 - -
20 Sobic.002G151600 R-interacting factor 1, putative, expressed -


Gene co-expression network
sample Sobic001G428000 Sobic001G428000 Sobic002G089900 Sobic002G089900 Sobic001G428000--Sobic002G089900 Sobic003G163100 Sobic003G163100 Sobic001G428000--Sobic003G163100 Sobic003G136800 Sobic003G136800 Sobic001G428000--Sobic003G136800 Sobic002G157200 Sobic002G157200 Sobic001G428000--Sobic002G157200 Sobic004G078100 Sobic004G078100 Sobic001G428000--Sobic004G078100 Sobic008G117200 Sobic008G117200 Sobic001G428000--Sobic008G117200 Sobic002G058300 Sobic002G058300 Sobic001G428000--Sobic002G058300 Sobic008G034600 Sobic008G034600 Sobic001G428000--Sobic008G034600 Sobic003G437500 Sobic003G437500 Sobic001G428000--Sobic003G437500 Sobic002G089900--Sobic004G078100 Sobic009G044900 Sobic009G044900 Sobic002G089900--Sobic009G044900 Sobic003G433500 Sobic003G433500 Sobic002G089900--Sobic003G433500 Sobic006G248500 Sobic006G248500 Sobic002G089900--Sobic006G248500 Sobic003G132700 Sobic003G132700 Sobic002G089900--Sobic003G132700 Sobic002G095700 Sobic002G095700 Sobic002G089900--Sobic002G095700 Sobic007G117100 Sobic007G117100 Sobic002G089900--Sobic007G117100 Sobic004G013600 Sobic004G013600 Sobic002G089900--Sobic004G013600 Sobic002G259800 Sobic002G259800 Sobic002G089900--Sobic002G259800 Sobic006G210100 Sobic006G210100 Sobic003G163100--Sobic006G210100 Sobic001G360900 Sobic001G360900 Sobic003G163100--Sobic001G360900 Sobic001G253200 Sobic001G253200 Sobic003G163100--Sobic001G253200 Sobic001G303675 Sobic001G303675 Sobic003G163100--Sobic001G303675 Sobic009G251300 Sobic009G251300 Sobic003G163100--Sobic009G251300 Sobic006G191400 Sobic006G191400 Sobic003G163100--Sobic006G191400 Sobic002G151600 Sobic002G151600 Sobic003G163100--Sobic002G151600 Sobic003G185250 Sobic003G185250 Sobic003G163100--Sobic003G185250 Sobic009G045700 Sobic009G045700 Sobic003G163100--Sobic009G045700 Sobic003G136800--Sobic002G151600 Sobic003G136800--Sobic008G034600 Sobic010G263800 Sobic010G263800 Sobic003G136800--Sobic010G263800 Sobic003G136800--Sobic009G045700 Sobic007G094801 Sobic007G094801 Sobic003G136800--Sobic007G094801 Sobic003G197800 Sobic003G197800 Sobic003G136800--Sobic003G197800 Sobic002G124200 Sobic002G124200 Sobic003G136800--Sobic002G124200 Sobic007G205800 Sobic007G205800 Sobic003G136800--Sobic007G205800 Sobic003G136800--Sobic001G428000 Sobic002G157200--Sobic008G034600 Sobic007G224900 Sobic007G224900 Sobic002G157200--Sobic007G224900 Sobic004G211400 Sobic004G211400 Sobic002G157200--Sobic004G211400 Sobic001G045700 Sobic001G045700 Sobic002G157200--Sobic001G045700 Sobic006G210200 Sobic006G210200 Sobic002G157200--Sobic006G210200 Sobic002G049000 Sobic002G049000 Sobic002G157200--Sobic002G049000 Sobic009G022200 Sobic009G022200 Sobic002G157200--Sobic009G022200 Sobic002G421700 Sobic002G421700 Sobic002G157200--Sobic002G421700 Sobic002G061400 Sobic002G061400 Sobic002G157200--Sobic002G061400 Sobic004G078100--Sobic002G089900 Sobic004G078100--Sobic003G433500 Sobic007G046900 Sobic007G046900 Sobic004G078100--Sobic007G046900 Sobic004G078100--Sobic002G095700 Sobic004G078100--Sobic002G151600 Sobic003G173950 Sobic003G173950 Sobic004G078100--Sobic003G173950 Sobic004G078100--Sobic003G197800 Sobic004G078100--Sobic002G058300 Sobic005G021500 Sobic005G021500 Sobic004G078100--Sobic005G021500 Sobic008G117200--Sobic010G263800 Sobic008G117200--Sobic008G034600 Sobic001G094000 Sobic001G094000 Sobic008G117200--Sobic001G094000 Sobic004G088400 Sobic004G088400 Sobic008G117200--Sobic004G088400 Sobic002G177400 Sobic002G177400 Sobic008G117200--Sobic002G177400 Sobic008G117200--Sobic002G421700 Sobic007G116400 Sobic007G116400 Sobic008G117200--Sobic007G116400 Sobic007G011400 Sobic007G011400 Sobic008G117200--Sobic007G011400 Sobic001G477800 Sobic001G477800 Sobic008G117200--Sobic001G477800 Sobic003G359300 Sobic003G359300 Sobic002G058300--Sobic003G359300 Sobic007G086500 Sobic007G086500 Sobic002G058300--Sobic007G086500 Sobic002G186000 Sobic002G186000 Sobic002G058300--Sobic002G186000 Sobic001G010600 Sobic001G010600 Sobic002G058300--Sobic001G010600 Sobic002G058300--Sobic003G197800 Sobic009G198100 Sobic009G198100 Sobic002G058300--Sobic009G198100 Sobic010G033400 Sobic010G033400 Sobic002G058300--Sobic010G033400 Sobic006G267300 Sobic006G267300 Sobic002G058300--Sobic006G267300 Sobic007G205000 Sobic007G205000 Sobic002G058300--Sobic007G205000 Sobic008G034600--Sobic007G205800 Sobic008G034600--Sobic007G011400 Sobic008G034600--Sobic010G263800 Sobic004G271900 Sobic004G271900 Sobic008G034600--Sobic004G271900 Sobic008G034600--Sobic008G117200 Sobic008G034600--Sobic002G421700 Sobic008G034600--Sobic009G022200 Sobic008G034600--Sobic007G224900 Sobic003G346000 Sobic003G346000 Sobic008G034600--Sobic003G346000 Sobic001G028400 Sobic001G028400 Sobic003G437500--Sobic001G028400 Sobic001G056200 Sobic001G056200 Sobic003G437500--Sobic001G056200 Sobic006G088100 Sobic006G088100 Sobic003G437500--Sobic006G088100 Sobic003G202800 Sobic003G202800 Sobic003G437500--Sobic003G202800 Sobic006G092800 Sobic006G092800 Sobic003G437500--Sobic006G092800 Sobic003G437500--Sobic004G013600 Sobic007G088900 Sobic007G088900 Sobic003G437500--Sobic007G088900 Sobic004G263900 Sobic004G263900 Sobic003G437500--Sobic004G263900 Sobic003G437500--Sobic003G359300
Octagon: transcription factors


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