Gene annotation
Transcriptome id Sobic.004G078100.2,Sobic.004G078100.1
Synonym Sb04g006450
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt A0A194YNB7 , C5XXF8
Pfam PF14608 PF00013 PF00642 PF00013 PF00642
Panther DB PTHR10288 PTHR10288:SF147
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT3G12130 : KH domain-containing protein / zinc finger (CCCH type) family protein
RAP-DB (Rice) LOC_Os02g10080.1,LOC_Os02g10080.2 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a034673
Brachypodium PNT66086 , KQJ93830 , KQK17661 , KQK17660
Barley HORVU6Hr1G033840.7 , HORVU6Hr1G033840.4 , HORVU6Hr1G033840.5 , HORVU6Hr1G033840.3 , HORVU6Hr1G033840.1 , HORVU6Hr1G033840.8 , HORVU6Hr1G025870.1 , HORVU6Hr1G033840.11
Wheat TraesCS7A02G402300 , TraesCS7A02G402300 , TraesCS6A02G166800 , TraesCS7B02G302400 , TraesCS7B02G302400 , TraesCS7D02G396100 , TraesCS6B02G194300 , TraesCS6A02G166900 , TraesCS6D02G155400 , TraesCS7D02G396100
Populus PNS22839 , PNS97872 , PNS97873


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cDNA sequences
Sobic.004G078100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G089900 OsFBX237 - F-box domain containing protein, expressed -
2 Sobic.003G433500 Putative splicing factor(PubMedID : 24356560)@serine/arginine repetitive matrix protein 1, putative, expressed K14325: RNA-binding protein with serine-rich domain 1
3 Sobic.007G046900 MBTB32 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
4 Sobic.002G095700 C2-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C2 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
5 Sobic.002G151600 R-interacting factor 1, putative, expressed -
6 Sobic.003G173950 - -
7 Sobic.003G197800 peptidyl-prolyl cis-trans isomerase, putative, expressed K12737: peptidyl-prolyl cis-trans isomerase SDCCAG10
8 Sobic.002G058300 ES43 protein, putative, expressed -
9 Sobic.005G021500 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
10 Sobic.006G210200 zinc finger domain, LSD1 subclass family protein, expressed -
11 Sobic.002G320500 MYB family transcription factor, putative, expressed -
12 Sobic.010G194700 ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed -
13 Sobic.004G229100 OsFBX61 - F-box domain containing protein, expressed -
14 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
15 Sobic.006G248500 expressed protein -
16 Sobic.006G013500 hydrolase/ zinc ion binding protein, putative, expressed K15442: TAD3, tRNA-specific adenosine deaminase 3
17 Sobic.009G044900 serine/threonine-protein phosphatase 2A regulatory subunit B subunitgamma, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
18 Sobic.007G160600 CAMK_CAMK_like.38 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
19 Sobic.001G206100 expressed protein -
20 Sobic.004G213000 AT hook motif family protein, expressed -


Gene co-expression network
sample Sobic004G078100 Sobic004G078100 Sobic002G089900 Sobic002G089900 Sobic004G078100--Sobic002G089900 Sobic003G433500 Sobic003G433500 Sobic004G078100--Sobic003G433500 Sobic007G046900 Sobic007G046900 Sobic004G078100--Sobic007G046900 Sobic002G095700 Sobic002G095700 Sobic004G078100--Sobic002G095700 Sobic002G151600 Sobic002G151600 Sobic004G078100--Sobic002G151600 Sobic003G173950 Sobic003G173950 Sobic004G078100--Sobic003G173950 Sobic003G197800 Sobic003G197800 Sobic004G078100--Sobic003G197800 Sobic002G058300 Sobic002G058300 Sobic004G078100--Sobic002G058300 Sobic005G021500 Sobic005G021500 Sobic004G078100--Sobic005G021500 Sobic002G089900--Sobic004G078100 Sobic009G044900 Sobic009G044900 Sobic002G089900--Sobic009G044900 Sobic002G089900--Sobic003G433500 Sobic006G248500 Sobic006G248500 Sobic002G089900--Sobic006G248500 Sobic003G132700 Sobic003G132700 Sobic002G089900--Sobic003G132700 Sobic002G089900--Sobic002G095700 Sobic007G117100 Sobic007G117100 Sobic002G089900--Sobic007G117100 Sobic004G013600 Sobic004G013600 Sobic002G089900--Sobic004G013600 Sobic002G259800 Sobic002G259800 Sobic002G089900--Sobic002G259800 Sobic009G195200 Sobic009G195200 Sobic003G433500--Sobic009G195200 Sobic003G355000 Sobic003G355000 Sobic003G433500--Sobic003G355000 Sobic002G045400 Sobic002G045400 Sobic003G433500--Sobic002G045400 Sobic009G216000 Sobic009G216000 Sobic003G433500--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic003G433500--Sobic003G354100 Sobic006G267300 Sobic006G267300 Sobic003G433500--Sobic006G267300 Sobic003G433500--Sobic006G248500 Sobic002G362300 Sobic002G362300 Sobic003G433500--Sobic002G362300 Sobic003G433500--Sobic002G259800 Sobic007G046900--Sobic004G078100 Sobic002G060450 Sobic002G060450 Sobic007G046900--Sobic002G060450 Sobic002G223300 Sobic002G223300 Sobic007G046900--Sobic002G223300 Sobic002G018600 Sobic002G018600 Sobic007G046900--Sobic002G018600 Sobic001G215400 Sobic001G215400 Sobic007G046900--Sobic001G215400 Sobic007G046900--Sobic002G095700 Sobic009G239301 Sobic009G239301 Sobic007G046900--Sobic009G239301 Sobic007G046900--Sobic002G089900 Sobic007G046900--Sobic003G433500 Sobic006G278200 Sobic006G278200 Sobic002G095700--Sobic006G278200 Sobic008G073000 Sobic008G073000 Sobic002G095700--Sobic008G073000 Sobic005G030300 Sobic005G030300 Sobic002G095700--Sobic005G030300 Sobic008G165100 Sobic008G165100 Sobic002G095700--Sobic008G165100 Sobic002G067800 Sobic002G067800 Sobic002G095700--Sobic002G067800 Sobic002G095700--Sobic003G433500 Sobic002G095700--Sobic002G089900 Sobic009G022100 Sobic009G022100 Sobic002G095700--Sobic009G022100 Sobic002G095700--Sobic004G078100 Sobic002G157000 Sobic002G157000 Sobic002G151600--Sobic002G157000 Sobic002G151600--Sobic003G197800 Sobic002G320500 Sobic002G320500 Sobic002G151600--Sobic002G320500 Sobic002G313300 Sobic002G313300 Sobic002G151600--Sobic002G313300 Sobic009G000500 Sobic009G000500 Sobic002G151600--Sobic009G000500 Sobic001G094000 Sobic001G094000 Sobic002G151600--Sobic001G094000 Sobic009G065100 Sobic009G065100 Sobic002G151600--Sobic009G065100 Sobic002G248400 Sobic002G248400 Sobic002G151600--Sobic002G248400 Sobic001G303675 Sobic001G303675 Sobic002G151600--Sobic001G303675 Sobic001G356500 Sobic001G356500 Sobic003G173950--Sobic001G356500 Sobic003G241200 Sobic003G241200 Sobic003G173950--Sobic003G241200 Sobic003G173950--Sobic003G197800 Sobic003G173950--Sobic002G320500 Sobic003G173950--Sobic002G157000 Sobic007G065400 Sobic007G065400 Sobic003G173950--Sobic007G065400 Sobic004G084300 Sobic004G084300 Sobic003G173950--Sobic004G084300 Sobic009G102500 Sobic009G102500 Sobic003G173950--Sobic009G102500 Sobic001G206100 Sobic001G206100 Sobic003G173950--Sobic001G206100 Sobic003G197800--Sobic002G157000 Sobic003G197800--Sobic002G320500 Sobic002G186000 Sobic002G186000 Sobic003G197800--Sobic002G186000 Sobic003G197800--Sobic002G151600 Sobic006G133800 Sobic006G133800 Sobic003G197800--Sobic006G133800 Sobic003G197800--Sobic009G065100 Sobic003G197800--Sobic003G173950 Sobic003G197800--Sobic002G248400 Sobic003G197800--Sobic001G206100 Sobic003G359300 Sobic003G359300 Sobic002G058300--Sobic003G359300 Sobic007G086500 Sobic007G086500 Sobic002G058300--Sobic007G086500 Sobic002G058300--Sobic002G186000 Sobic001G010600 Sobic001G010600 Sobic002G058300--Sobic001G010600 Sobic002G058300--Sobic003G197800 Sobic009G198100 Sobic009G198100 Sobic002G058300--Sobic009G198100 Sobic010G033400 Sobic010G033400 Sobic002G058300--Sobic010G033400 Sobic002G058300--Sobic006G267300 Sobic007G205000 Sobic007G205000 Sobic002G058300--Sobic007G205000 Sobic005G021500--Sobic002G320500 Sobic005G021500--Sobic009G065100 Sobic003G394300 Sobic003G394300 Sobic005G021500--Sobic003G394300 Sobic001G533700 Sobic001G533700 Sobic005G021500--Sobic001G533700 Sobic004G158200 Sobic004G158200 Sobic005G021500--Sobic004G158200 Sobic004G039200 Sobic004G039200 Sobic005G021500--Sobic004G039200 Sobic005G021500--Sobic009G000500 Sobic005G021500--Sobic006G133800 Sobic001G090400 Sobic001G090400 Sobic005G021500--Sobic001G090400
Octagon: transcription factors


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