Gene annotation
Transcriptome id Sobic.004G229100.2,Sobic.004G229100.3,Sobic.004G229100.1
Synonym FBW2, Sb04g027350
Functional annotation OsFBX61 - F-box domain containing protein, expressed
UniProt C5XYB1 , A0A194YR88
Pfam -
Panther DB PTHR24006
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G08980 : F-BOX WITH WD-40 2
RAP-DB (Rice) LOC_Os02g52130.4,LOC_Os02g52130.3 : OsFBX61 - F-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a022164 , Zm00025a033144
Brachypodium KQK01819 , KQK01818 , KQK01817 , KQK01816 , PNT69601 , PNT69600 , KQK01821 , KQK01820 , KQK01822
Barley HORVU6Hr1G077670.2 , HORVU7Hr1G036660.6 , HORVU7Hr1G036660.2 , HORVU6Hr1G077670.4 , HORVU6Hr1G077670.3 , HORVU6Hr1G077730.1 , HORVU7Hr1G036660.5 , HORVU7Hr1G036660.1 , HORVU7Hr1G036660.3
Wheat TraesCS7A02G178000 , TraesCS7B02G083700 , TraesCS7D02G179800 , TraesCS6D02G296000 , TraesCS6A02G316400 , TraesCS6B02G347000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G229100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G217100 double-stranded RNA binding motif containing protein, expressed -
2 Sobic.004G078100 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
3 Sobic.009G192500 OsFBX169 - F-box domain containing protein, expressed -
4 Sobic.003G132700 OsFBX237 - F-box domain containing protein, expressed -
5 Sobic.007G046900 MBTB32 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
6 Sobic.009G164900 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
7 Sobic.002G089900 OsFBX237 - F-box domain containing protein, expressed -
8 Sobic.009G018000 expressed protein -
9 Sobic.002G095700 C2-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C2 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
10 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
11 Sobic.006G022500 OsFBD9 - F-box and FBD domain containing protein, expressed -
12 Sobic.008G044600 expressed protein -
13 Sobic.002G076100 transcription factor, putative, expressed K09060: plant G-box-binding factor
14 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
15 Sobic.005G177900 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
16 Sobic.007G063200 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
17 Sobic.002G007200 plastocyanin-like domain containing protein, putative, expressed -
18 Sobic.009G044900 serine/threonine-protein phosphatase 2A regulatory subunit B subunitgamma, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
19 Sobic.002G060450 - -
20 Sobic.004G207000 fasciated ear2, putative, expressed -


Gene co-expression network
sample Sobic004G229100 Sobic004G229100 Sobic001G217100 Sobic001G217100 Sobic004G229100--Sobic001G217100 Sobic004G078100 Sobic004G078100 Sobic004G229100--Sobic004G078100 Sobic009G192500 Sobic009G192500 Sobic004G229100--Sobic009G192500 Sobic003G132700 Sobic003G132700 Sobic004G229100--Sobic003G132700 Sobic007G046900 Sobic007G046900 Sobic004G229100--Sobic007G046900 Sobic009G164900 Sobic009G164900 Sobic004G229100--Sobic009G164900 Sobic002G089900 Sobic002G089900 Sobic004G229100--Sobic002G089900 Sobic009G018000 Sobic009G018000 Sobic004G229100--Sobic009G018000 Sobic002G095700 Sobic002G095700 Sobic004G229100--Sobic002G095700 Sobic001G217100--Sobic004G229100 Sobic001G217100--Sobic003G132700 Sobic006G067700 Sobic006G067700 Sobic001G217100--Sobic006G067700 Sobic002G223300 Sobic002G223300 Sobic001G217100--Sobic002G223300 Sobic002G334600 Sobic002G334600 Sobic001G217100--Sobic002G334600 Sobic001G217100--Sobic009G164900 Sobic001G019200 Sobic001G019200 Sobic001G217100--Sobic001G019200 Sobic002G430900 Sobic002G430900 Sobic001G217100--Sobic002G430900 Sobic002G002100 Sobic002G002100 Sobic001G217100--Sobic002G002100 Sobic004G078100--Sobic002G089900 Sobic003G433500 Sobic003G433500 Sobic004G078100--Sobic003G433500 Sobic004G078100--Sobic007G046900 Sobic004G078100--Sobic002G095700 Sobic002G151600 Sobic002G151600 Sobic004G078100--Sobic002G151600 Sobic003G173950 Sobic003G173950 Sobic004G078100--Sobic003G173950 Sobic003G197800 Sobic003G197800 Sobic004G078100--Sobic003G197800 Sobic002G058300 Sobic002G058300 Sobic004G078100--Sobic002G058300 Sobic005G021500 Sobic005G021500 Sobic004G078100--Sobic005G021500 Sobic009G192500--Sobic003G132700 Sobic007G117100 Sobic007G117100 Sobic009G192500--Sobic007G117100 Sobic009G192500--Sobic002G430900 Sobic009G022100 Sobic009G022100 Sobic009G192500--Sobic009G022100 Sobic007G125700 Sobic007G125700 Sobic009G192500--Sobic007G125700 Sobic009G192500--Sobic002G095700 Sobic003G253400 Sobic003G253400 Sobic009G192500--Sobic003G253400 Sobic009G192500--Sobic002G223300 Sobic009G192500--Sobic004G229100 Sobic003G132700--Sobic009G192500 Sobic003G354100 Sobic003G354100 Sobic003G132700--Sobic003G354100 Sobic003G132700--Sobic007G117100 Sobic003G132700--Sobic002G089900 Sobic002G014700 Sobic002G014700 Sobic003G132700--Sobic002G014700 Sobic003G132700--Sobic002G223300 Sobic003G132700--Sobic002G334600 Sobic003G132700--Sobic003G433500 Sobic001G507400 Sobic001G507400 Sobic003G132700--Sobic001G507400 Sobic007G046900--Sobic004G078100 Sobic002G060450 Sobic002G060450 Sobic007G046900--Sobic002G060450 Sobic007G046900--Sobic002G223300 Sobic002G018600 Sobic002G018600 Sobic007G046900--Sobic002G018600 Sobic001G215400 Sobic001G215400 Sobic007G046900--Sobic001G215400 Sobic007G046900--Sobic002G095700 Sobic009G239301 Sobic009G239301 Sobic007G046900--Sobic009G239301 Sobic007G046900--Sobic002G089900 Sobic007G046900--Sobic003G433500 Sobic002G007200 Sobic002G007200 Sobic009G164900--Sobic002G007200 Sobic003G380500 Sobic003G380500 Sobic009G164900--Sobic003G380500 Sobic001G216600 Sobic001G216600 Sobic009G164900--Sobic001G216600 Sobic003G356200 Sobic003G356200 Sobic009G164900--Sobic003G356200 Sobic009G164900--Sobic001G217100 Sobic009G164900--Sobic004G229100 Sobic009G011500 Sobic009G011500 Sobic009G164900--Sobic009G011500 Sobic007G195400 Sobic007G195400 Sobic009G164900--Sobic007G195400 Sobic002G157200 Sobic002G157200 Sobic009G164900--Sobic002G157200 Sobic002G089900--Sobic004G078100 Sobic009G044900 Sobic009G044900 Sobic002G089900--Sobic009G044900 Sobic002G089900--Sobic003G433500 Sobic006G248500 Sobic006G248500 Sobic002G089900--Sobic006G248500 Sobic002G089900--Sobic003G132700 Sobic002G089900--Sobic002G095700 Sobic002G089900--Sobic007G117100 Sobic004G013600 Sobic004G013600 Sobic002G089900--Sobic004G013600 Sobic002G259800 Sobic002G259800 Sobic002G089900--Sobic002G259800 Sobic009G018000--Sobic004G229100 Sobic009G018000--Sobic007G046900 Sobic009G018000--Sobic009G192500 Sobic009G018000--Sobic003G132700 Sobic009G018000--Sobic002G089900 Sobic009G018000--Sobic004G078100 Sobic008G057000 Sobic008G057000 Sobic009G018000--Sobic008G057000 Sobic010G013500 Sobic010G013500 Sobic009G018000--Sobic010G013500 Sobic009G018000--Sobic002G223300 Sobic006G278200 Sobic006G278200 Sobic002G095700--Sobic006G278200 Sobic008G073000 Sobic008G073000 Sobic002G095700--Sobic008G073000 Sobic005G030300 Sobic005G030300 Sobic002G095700--Sobic005G030300 Sobic008G165100 Sobic008G165100 Sobic002G095700--Sobic008G165100 Sobic002G067800 Sobic002G067800 Sobic002G095700--Sobic002G067800 Sobic002G095700--Sobic003G433500 Sobic002G095700--Sobic002G089900 Sobic002G095700--Sobic009G022100 Sobic002G095700--Sobic004G078100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.