Gene annotation
Transcriptome id Sobic.006G022500.1
Synonym Sb06g002100
Functional annotation OsFBD9 - F-box and FBD domain containing protein, expressed
UniProt C5YCN8
Pfam PF00646 PF08387
Panther DB PTHR32212 PTHR32212:SF76
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G59200 : F-box/RNI-like superfamily protein
RAP-DB (Rice) LOC_Os04g13160.1 : OsFBD9 - F-box and FBD domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK07175 , KQK07176 , KQK07177 , KQK16228
Barley -
Wheat TraesCS4D02G117500 , TraesCS3B02G500200 , TraesCS3B02G500200 , TraesCS4A02G086200 , TraesCS2B02G088600 , TraesCS4B02G119000 , TraesCS4B02G119100 , TraesCS4A02G195900 , TraesCS4A02G195800 , TraesCS3D02G163600 , TraesCS4D02G117300 , TraesCS3B02G500200 , TraesCS4B02G119200 , TraesCS4B02G119200 , TraesCS1D02G268400 , TraesCS1D02G268400
Populus -


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cDNA sequences
Sobic.006G022500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G227500 WD-40 repeat family protein, putative, expressed -
2 Sobic.004G148600 ankyrin, putative, expressed -
3 Sobic.001G384600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
4 Sobic.002G073300 - -
5 Sobic.002G060450 - -
6 Sobic.004G189700 OsFBL33 - F-box domain and LRR containing protein, expressed -
7 Sobic.001G045700 "CESA3-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA2 - cellulose synthase, expressed K10999: cellulose synthase A
8 Sobic.006G022400 F-box/RNI-like/FBD-like domains-containing protein("PubMedID : 26759170,PubMedID : 24597475")@OsFBD9 - F-box and FBD domain containing protein, expressed -
9 Sobic.005G177900 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
10 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
11 Sobic.007G046900 MBTB32 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
12 Sobic.001G065300 GRF zinc finger family protein, expressed -
13 Sobic.004G132100 ATP binding protein, putative, expressed -
14 Sobic.008G099500 - -
15 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
16 Sobic.002G140800 RNA pseudouridine synthase, putative, expressed -
17 Sobic.003G244700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
18 Sobic.009G011500 expressed protein -
19 Sobic.002G061400 OsFBX237 - F-box domain containing protein, expressed -
20 Sobic.004G045566 - -


Gene co-expression network
sample Sobic006G022500 Sobic006G022500 Sobic004G227500 Sobic004G227500 Sobic006G022500--Sobic004G227500 Sobic004G148600 Sobic004G148600 Sobic006G022500--Sobic004G148600 Sobic001G384600 Sobic001G384600 Sobic006G022500--Sobic001G384600 Sobic002G073300 Sobic002G073300 Sobic006G022500--Sobic002G073300 Sobic002G060450 Sobic002G060450 Sobic006G022500--Sobic002G060450 Sobic004G189700 Sobic004G189700 Sobic006G022500--Sobic004G189700 Sobic001G045700 Sobic001G045700 Sobic006G022500--Sobic001G045700 Sobic006G022400 Sobic006G022400 Sobic006G022500--Sobic006G022400 Sobic005G177900 Sobic005G177900 Sobic006G022500--Sobic005G177900 Sobic004G227500--Sobic006G022500 Sobic002G316500 Sobic002G316500 Sobic004G227500--Sobic002G316500 Sobic010G046400 Sobic010G046400 Sobic004G227500--Sobic010G046400 Sobic001G494100 Sobic001G494100 Sobic004G227500--Sobic001G494100 Sobic004G135500 Sobic004G135500 Sobic004G227500--Sobic004G135500 Sobic010G173900 Sobic010G173900 Sobic004G227500--Sobic010G173900 Sobic001G315400 Sobic001G315400 Sobic004G227500--Sobic001G315400 Sobic001G367100 Sobic001G367100 Sobic004G227500--Sobic001G367100 Sobic002G334600 Sobic002G334600 Sobic004G227500--Sobic002G334600 Sobic004G148600--Sobic006G022500 Sobic004G148600--Sobic001G384600 Sobic004G148600--Sobic005G177900 Sobic003G244700 Sobic003G244700 Sobic004G148600--Sobic003G244700 Sobic005G127300 Sobic005G127300 Sobic004G148600--Sobic005G127300 Sobic002G019600 Sobic002G019600 Sobic004G148600--Sobic002G019600 Sobic002G105000 Sobic002G105000 Sobic004G148600--Sobic002G105000 Sobic004G132100 Sobic004G132100 Sobic004G148600--Sobic004G132100 Sobic001G522400 Sobic001G522400 Sobic004G148600--Sobic001G522400 Sobic001G384600--Sobic005G177900 Sobic001G384600--Sobic006G022500 Sobic001G384600--Sobic004G148600 Sobic001G228400 Sobic001G228400 Sobic001G384600--Sobic001G228400 Sobic009G194700 Sobic009G194700 Sobic001G384600--Sobic009G194700 Sobic001G384600--Sobic003G244700 Sobic006G126600 Sobic006G126600 Sobic001G384600--Sobic006G126600 Sobic001G384600--Sobic006G022400 Sobic004G052800 Sobic004G052800 Sobic001G384600--Sobic004G052800 Sobic005G128000 Sobic005G128000 Sobic002G073300--Sobic005G128000 Sobic010G139301 Sobic010G139301 Sobic002G073300--Sobic010G139301 Sobic004G169501 Sobic004G169501 Sobic002G073300--Sobic004G169501 Sobic001G454301 Sobic001G454301 Sobic002G073300--Sobic001G454301 Sobic002G182300 Sobic002G182300 Sobic002G073300--Sobic002G182300 Sobic004G289500 Sobic004G289500 Sobic002G073300--Sobic004G289500 Sobic002G181450 Sobic002G181450 Sobic002G073300--Sobic002G181450 Sobic007G142050 Sobic007G142050 Sobic002G073300--Sobic007G142050 Sobic004G045566 Sobic004G045566 Sobic002G073300--Sobic004G045566 Sobic003G185250 Sobic003G185250 Sobic002G060450--Sobic003G185250 Sobic002G049000 Sobic002G049000 Sobic002G060450--Sobic002G049000 Sobic007G046900 Sobic007G046900 Sobic002G060450--Sobic007G046900 Sobic006G210200 Sobic006G210200 Sobic002G060450--Sobic006G210200 Sobic006G006500 Sobic006G006500 Sobic002G060450--Sobic006G006500 Sobic002G060450--Sobic001G045700 Sobic002G050500 Sobic002G050500 Sobic002G060450--Sobic002G050500 Sobic002G060450--Sobic006G022500 Sobic003G346000 Sobic003G346000 Sobic002G060450--Sobic003G346000 Sobic004G189700--Sobic006G022500 Sobic004G189700--Sobic006G022400 Sobic008G090300 Sobic008G090300 Sobic004G189700--Sobic008G090300 Sobic004G189700--Sobic005G177900 Sobic003G397100 Sobic003G397100 Sobic004G189700--Sobic003G397100 Sobic002G268900 Sobic002G268900 Sobic004G189700--Sobic002G268900 Sobic003G077500 Sobic003G077500 Sobic004G189700--Sobic003G077500 Sobic001G499200 Sobic001G499200 Sobic004G189700--Sobic001G499200 Sobic001G065300 Sobic001G065300 Sobic004G189700--Sobic001G065300 Sobic002G157200 Sobic002G157200 Sobic001G045700--Sobic002G157200 Sobic007G224900 Sobic007G224900 Sobic001G045700--Sobic007G224900 Sobic001G045700--Sobic003G185250 Sobic001G045700--Sobic006G006500 Sobic001G045700--Sobic002G049000 Sobic001G045700--Sobic002G060450 Sobic001G045700--Sobic002G050500 Sobic002G297800 Sobic002G297800 Sobic001G045700--Sobic002G297800 Sobic010G208500 Sobic010G208500 Sobic001G045700--Sobic010G208500 Sobic004G207000 Sobic004G207000 Sobic006G022400--Sobic004G207000 Sobic001G079900 Sobic001G079900 Sobic006G022400--Sobic001G079900 Sobic009G216500 Sobic009G216500 Sobic006G022400--Sobic009G216500 Sobic006G022400--Sobic005G177900 Sobic001G395200 Sobic001G395200 Sobic006G022400--Sobic001G395200 Sobic003G351900 Sobic003G351900 Sobic006G022400--Sobic003G351900 Sobic006G022400--Sobic006G022500 Sobic008G169400 Sobic008G169400 Sobic006G022400--Sobic008G169400 Sobic005G032600 Sobic005G032600 Sobic006G022400--Sobic005G032600 Sobic005G177900--Sobic001G384600 Sobic005G177900--Sobic006G022400 Sobic005G177900--Sobic004G052800 Sobic005G177900--Sobic006G022500 Sobic005G177900--Sobic004G207000 Sobic005G177900--Sobic001G228400 Sobic005G177900--Sobic006G126600 Sobic005G177900--Sobic004G189700 Sobic002G223300 Sobic002G223300 Sobic005G177900--Sobic002G223300
Octagon: transcription factors


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