Gene annotation
Transcriptome id Sobic.004G227500.1
Synonym Sb04g027190
Functional annotation WD-40 repeat family protein, putative, expressed
UniProt C5XY88
Pfam PF00400
Panther DB PTHR14221 PTHR14221:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G15470 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os02g42590.1 : WD-40 repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a032104 , Zm00025a056566 , Zm00025a010466 , Zm00025a021003
Brachypodium KQK00493
Barley HORVU6Hr1G060150.17 , HORVU6Hr1G060150.14 , HORVU6Hr1G060150.12 , HORVU6Hr1G060150.10 , HORVU6Hr1G060150.8 , HORVU6Hr1G060150.9 , HORVU6Hr1G060150.4 , HORVU6Hr1G060150.5 , HORVU6Hr1G060150.6 , HORVU6Hr1G060150.7 , HORVU6Hr1G060150.1 , HORVU6Hr1G060150.2 , HORVU6Hr1G060150.3 , HORVU6Hr1G060150.26 , HORVU6Hr1G060150.25 , HORVU6Hr1G060150.24 , HORVU6Hr1G060150.23 , HORVU6Hr1G060150.22 , HORVU6Hr1G060150.21 , HORVU6Hr1G060150.20 , HORVU6Hr1G060150.18 , HORVU6Hr1G060150.19 , HORVU6Hr1G060150.16 , HORVU6Hr1G060150.15 , HORVU6Hr1G060150.13 , HORVU6Hr1G060150.11
Wheat TraesCS6D02G217900 , TraesCS6D02G217900 , TraesCS6A02G235200 , TraesCS6B02G263900 , TraesCS6B02G263900
Populus PNT13077 , PNT13078 , PNT59333


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cDNA sequences
Sobic.004G227500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G022500 OsFBD9 - F-box and FBD domain containing protein, expressed -
2 Sobic.002G316500 GRAS family transcription factor domain containing protein, expressed -
3 Sobic.010G046400 glyoxalase/bleomycin resistance protein/dioxygenase, putative, expressed -
4 Sobic.001G494100 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
5 Sobic.004G135500 - -
6 Sobic.010G173900 expressed protein -
7 Sobic.001G315400 expressed protein -
8 Sobic.001G367100 pleckstrin homology domain-containing protein, putative, expressed -
9 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
10 Sobic.001G045700 "CESA3-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA2 - cellulose synthase, expressed K10999: cellulose synthase A
11 Sobic.001G448100 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
12 Sobic.002G140800 RNA pseudouridine synthase, putative, expressed -
13 Sobic.002G060450 - -
14 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
15 Sobic.009G011500 expressed protein -
16 Sobic.002G105000 OsFBD15 - F-box and FBD domain containing protein, expressed -
17 Sobic.010G050700 protein kinase, putative, expressed -
18 Sobic.003G185250 - -
19 Sobic.009G030300 RNA polymerase II-associated protein 3, putative, expressed -
20 Sobic.008G000800 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11


Gene co-expression network
sample Sobic004G227500 Sobic004G227500 Sobic006G022500 Sobic006G022500 Sobic004G227500--Sobic006G022500 Sobic002G316500 Sobic002G316500 Sobic004G227500--Sobic002G316500 Sobic010G046400 Sobic010G046400 Sobic004G227500--Sobic010G046400 Sobic001G494100 Sobic001G494100 Sobic004G227500--Sobic001G494100 Sobic004G135500 Sobic004G135500 Sobic004G227500--Sobic004G135500 Sobic010G173900 Sobic010G173900 Sobic004G227500--Sobic010G173900 Sobic001G315400 Sobic001G315400 Sobic004G227500--Sobic001G315400 Sobic001G367100 Sobic001G367100 Sobic004G227500--Sobic001G367100 Sobic002G334600 Sobic002G334600 Sobic004G227500--Sobic002G334600 Sobic006G022500--Sobic004G227500 Sobic004G148600 Sobic004G148600 Sobic006G022500--Sobic004G148600 Sobic001G384600 Sobic001G384600 Sobic006G022500--Sobic001G384600 Sobic002G073300 Sobic002G073300 Sobic006G022500--Sobic002G073300 Sobic002G060450 Sobic002G060450 Sobic006G022500--Sobic002G060450 Sobic004G189700 Sobic004G189700 Sobic006G022500--Sobic004G189700 Sobic001G045700 Sobic001G045700 Sobic006G022500--Sobic001G045700 Sobic006G022400 Sobic006G022400 Sobic006G022500--Sobic006G022400 Sobic005G177900 Sobic005G177900 Sobic006G022500--Sobic005G177900 Sobic002G316500--Sobic004G227500 Sobic009G013100 Sobic009G013100 Sobic002G316500--Sobic009G013100 Sobic010G229000 Sobic010G229000 Sobic002G316500--Sobic010G229000 Sobic008G099500 Sobic008G099500 Sobic002G316500--Sobic008G099500 Sobic005G127300 Sobic005G127300 Sobic002G316500--Sobic005G127300 Sobic002G316500--Sobic010G046400 Sobic008G000800 Sobic008G000800 Sobic002G316500--Sobic008G000800 Sobic007G195400 Sobic007G195400 Sobic002G316500--Sobic007G195400 Sobic007G130300 Sobic007G130300 Sobic002G316500--Sobic007G130300 Sobic010G046400--Sobic010G173900 Sobic010G046400--Sobic004G227500 Sobic010G046400--Sobic002G334600 Sobic002G218700 Sobic002G218700 Sobic010G046400--Sobic002G218700 Sobic007G070300 Sobic007G070300 Sobic010G046400--Sobic007G070300 Sobic002G367300 Sobic002G367300 Sobic010G046400--Sobic002G367300 Sobic009G011500 Sobic009G011500 Sobic010G046400--Sobic009G011500 Sobic010G046400--Sobic008G099500 Sobic001G247200 Sobic001G247200 Sobic010G046400--Sobic001G247200 Sobic006G046600 Sobic006G046600 Sobic001G494100--Sobic006G046600 Sobic008G169400 Sobic008G169400 Sobic001G494100--Sobic008G169400 Sobic005G204100 Sobic005G204100 Sobic001G494100--Sobic005G204100 Sobic001G494100--Sobic004G227500 Sobic003G277900 Sobic003G277900 Sobic001G494100--Sobic003G277900 Sobic006G262100 Sobic006G262100 Sobic001G494100--Sobic006G262100 Sobic002G216600 Sobic002G216600 Sobic001G494100--Sobic002G216600 Sobic004G199700 Sobic004G199700 Sobic001G494100--Sobic004G199700 Sobic001G494100--Sobic001G315400 Sobic004G135500--Sobic004G227500 Sobic004G135500--Sobic006G262100 Sobic004G135500--Sobic008G169400 Sobic004G135500--Sobic001G494100 Sobic004G135500--Sobic008G099500 Sobic008G048966 Sobic008G048966 Sobic004G135500--Sobic008G048966 Sobic002G162000 Sobic002G162000 Sobic004G135500--Sobic002G162000 Sobic003G347300 Sobic003G347300 Sobic004G135500--Sobic003G347300 Sobic004G135500--Sobic002G218700 Sobic010G173900--Sobic010G046400 Sobic010G173900--Sobic004G227500 Sobic010G173900--Sobic002G334600 Sobic010G173900--Sobic001G045700 Sobic010G173900--Sobic009G011500 Sobic010G208500 Sobic010G208500 Sobic010G173900--Sobic010G208500 Sobic002G050500 Sobic002G050500 Sobic010G173900--Sobic002G050500 Sobic002G157200 Sobic002G157200 Sobic010G173900--Sobic002G157200 Sobic010G173900--Sobic002G367300 Sobic001G315400--Sobic001G367100 Sobic003G077500 Sobic003G077500 Sobic001G315400--Sobic003G077500 Sobic002G079100 Sobic002G079100 Sobic001G315400--Sobic002G079100 Sobic002G002100 Sobic002G002100 Sobic001G315400--Sobic002G002100 Sobic005G047300 Sobic005G047300 Sobic001G315400--Sobic005G047300 Sobic002G223300 Sobic002G223300 Sobic001G315400--Sobic002G223300 Sobic004G128200 Sobic004G128200 Sobic001G315400--Sobic004G128200 Sobic001G315400--Sobic004G227500 Sobic001G395200 Sobic001G395200 Sobic001G315400--Sobic001G395200 Sobic010G279900 Sobic010G279900 Sobic001G367100--Sobic010G279900 Sobic001G367100--Sobic001G315400 Sobic001G245900 Sobic001G245900 Sobic001G367100--Sobic001G245900 Sobic003G023400 Sobic003G023400 Sobic001G367100--Sobic003G023400 Sobic008G080500 Sobic008G080500 Sobic001G367100--Sobic008G080500 Sobic009G151200 Sobic009G151200 Sobic001G367100--Sobic009G151200 Sobic001G367100--Sobic004G128200 Sobic001G367100--Sobic002G079100 Sobic001G367100--Sobic003G077500 Sobic002G334600--Sobic002G223300 Sobic009G030300 Sobic009G030300 Sobic002G334600--Sobic009G030300 Sobic007G139400 Sobic007G139400 Sobic002G334600--Sobic007G139400 Sobic007G188900 Sobic007G188900 Sobic002G334600--Sobic007G188900 Sobic003G132700 Sobic003G132700 Sobic002G334600--Sobic003G132700 Sobic002G089900 Sobic002G089900 Sobic002G334600--Sobic002G089900 Sobic003G354100 Sobic003G354100 Sobic002G334600--Sobic003G354100 Sobic009G044900 Sobic009G044900 Sobic002G334600--Sobic009G044900 Sobic002G334600--Sobic002G157200
Octagon: transcription factors


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