Gene annotation
Transcriptome id Sobic.001G448100.1
Synonym NRPE2, NRPD2A, NRPD2, DRD2, Sb01g042100, DMS2
Functional annotation DNA-directed RNA polymerase subunit, putative, expressed
UniProt C5WRS0
Pfam PF04561 PF04567 PF04565 PF04566 PF04560 PF04563 PF00562
Panther DB PTHR20856 PTHR20856:SF21
NCBI CDD -
KEGG Orthology K16252; NRPD2, DNA-directed RNA polymerase IV and V subunit 2
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G23780 : nuclear RNA polymerase D2A
RAP-DB (Rice) LOC_Os04g54840.1 : DNA-directed RNA polymerase subunit, putative, expressed
MaizeGDB (Corn) Zm00025a057164 , Zm00025a009588
Brachypodium KQJ88134 , KQJ84891 , KQJ84890 , KQJ84892 , PNT61975 , PNT61974 , PNT61973 , PNT61972 , KQJ88132 , KQJ88133 , KQJ88131 , KQJ88135 , KQJ95216 , KQK03136 , KQJ84889
Barley HORVU4Hr1G062240.1 , HORVU7Hr1G076860.1 , HORVU2Hr1G115600.9 , HORVU2Hr1G115600.8 , HORVU2Hr1G115600.3 , HORVU2Hr1G115600.2 , HORVU2Hr1G115600.1 , HORVU2Hr1G115600.7 , HORVU2Hr1G115600.6 , HORVU2Hr1G115600.5 , HORVU2Hr1G115600.4 , HORVU2Hr1G115600.12 , HORVU2Hr1G115600.11 , HORVU2Hr1G115600.10
Wheat TraesCS7A02G321100 , TraesCS2B02G552400 , TraesCS2A02G522400 , TraesCS7D02G318200 , TraesCS2D02G524500 , TraesCS7B02G222200
Populus -


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cDNA sequences
Sobic.001G448100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
2 Sobic.003G397100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
3 Sobic.004G007900 SNF2 family N-terminal domain containing protein, expressed K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
4 Sobic.002G235900 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
5 Sobic.002G380100 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
6 Sobic.009G154900 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ
7 Sobic.001G522400 FHA domain containing protein, putative, expressed -
8 Sobic.009G000400 expressed protein -
9 Sobic.003G067201 - -
10 Sobic.004G227500 WD-40 repeat family protein, putative, expressed -
11 Sobic.001G187800 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
12 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
13 Sobic.004G313500 acetyltransferase, GNAT family, putative, expressed -
14 Sobic.003G299500 expressed protein -
15 Sobic.006G006500 MBTB44 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
16 Sobic.009G108400 CAAX amino terminal protease family protein, putative, expressed K08658: RCE1, prenyl protein peptidase
17 Sobic.010G143600 ATP-binding region, ATPase-like domain containing protein, expressed -
18 Sobic.007G031300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
19 Sobic.001G453500 expressed protein -
20 Sobic.005G154700 OsFBX407 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic001G448100 Sobic001G448100 Sobic002G079100 Sobic002G079100 Sobic001G448100--Sobic002G079100 Sobic003G397100 Sobic003G397100 Sobic001G448100--Sobic003G397100 Sobic004G007900 Sobic004G007900 Sobic001G448100--Sobic004G007900 Sobic002G235900 Sobic002G235900 Sobic001G448100--Sobic002G235900 Sobic002G380100 Sobic002G380100 Sobic001G448100--Sobic002G380100 Sobic009G154900 Sobic009G154900 Sobic001G448100--Sobic009G154900 Sobic001G522400 Sobic001G522400 Sobic001G448100--Sobic001G522400 Sobic009G000400 Sobic009G000400 Sobic001G448100--Sobic009G000400 Sobic003G067201 Sobic003G067201 Sobic001G448100--Sobic003G067201 Sobic003G124600 Sobic003G124600 Sobic002G079100--Sobic003G124600 Sobic002G079100--Sobic001G448100 Sobic008G017100 Sobic008G017100 Sobic002G079100--Sobic008G017100 Sobic008G080500 Sobic008G080500 Sobic002G079100--Sobic008G080500 Sobic002G079100--Sobic002G380100 Sobic002G292800 Sobic002G292800 Sobic002G079100--Sobic002G292800 Sobic010G278600 Sobic010G278600 Sobic002G079100--Sobic010G278600 Sobic006G245900 Sobic006G245900 Sobic002G079100--Sobic006G245900 Sobic001G482200 Sobic001G482200 Sobic002G079100--Sobic001G482200 Sobic001G242300 Sobic001G242300 Sobic003G397100--Sobic001G242300 Sobic002G123600 Sobic002G123600 Sobic003G397100--Sobic002G123600 Sobic002G260700 Sobic002G260700 Sobic003G397100--Sobic002G260700 Sobic008G090300 Sobic008G090300 Sobic003G397100--Sobic008G090300 Sobic008G169400 Sobic008G169400 Sobic003G397100--Sobic008G169400 Sobic008G112100 Sobic008G112100 Sobic003G397100--Sobic008G112100 Sobic010G143600 Sobic010G143600 Sobic003G397100--Sobic010G143600 Sobic003G397100--Sobic001G448100 Sobic008G031200 Sobic008G031200 Sobic003G397100--Sobic008G031200 Sobic002G340000 Sobic002G340000 Sobic004G007900--Sobic002G340000 Sobic004G007900--Sobic002G235900 Sobic009G099100 Sobic009G099100 Sobic004G007900--Sobic009G099100 Sobic004G007900--Sobic009G154900 Sobic004G007900--Sobic001G448100 Sobic004G007900--Sobic002G079100 Sobic004G007900--Sobic008G080500 Sobic003G299500 Sobic003G299500 Sobic004G007900--Sobic003G299500 Sobic004G007900--Sobic006G245900 Sobic002G235900--Sobic004G007900 Sobic002G235900--Sobic003G299500 Sobic002G235900--Sobic008G080500 Sobic002G235900--Sobic002G079100 Sobic002G235900--Sobic001G448100 Sobic009G102000 Sobic009G102000 Sobic002G235900--Sobic009G102000 Sobic004G106250 Sobic004G106250 Sobic002G235900--Sobic004G106250 Sobic002G235900--Sobic009G000400 Sobic003G016500 Sobic003G016500 Sobic002G235900--Sobic003G016500 Sobic002G380100--Sobic002G079100 Sobic004G119400 Sobic004G119400 Sobic002G380100--Sobic004G119400 Sobic002G380100--Sobic008G017100 Sobic006G111200 Sobic006G111200 Sobic002G380100--Sobic006G111200 Sobic002G380100--Sobic001G448100 Sobic003G185250 Sobic003G185250 Sobic002G380100--Sobic003G185250 Sobic003G070100 Sobic003G070100 Sobic002G380100--Sobic003G070100 Sobic010G050700 Sobic010G050700 Sobic002G380100--Sobic010G050700 Sobic009G096100 Sobic009G096100 Sobic002G380100--Sobic009G096100 Sobic006G262800 Sobic006G262800 Sobic009G154900--Sobic006G262800 Sobic001G043200 Sobic001G043200 Sobic009G154900--Sobic001G043200 Sobic003G194800 Sobic003G194800 Sobic009G154900--Sobic003G194800 Sobic004G215600 Sobic004G215600 Sobic009G154900--Sobic004G215600 Sobic009G154900--Sobic004G007900 Sobic009G108400 Sobic009G108400 Sobic009G154900--Sobic009G108400 Sobic004G194100 Sobic004G194100 Sobic009G154900--Sobic004G194100 Sobic009G154900--Sobic001G448100 Sobic005G123400 Sobic005G123400 Sobic009G154900--Sobic005G123400 Sobic002G268900 Sobic002G268900 Sobic001G522400--Sobic002G268900 Sobic004G085300 Sobic004G085300 Sobic001G522400--Sobic004G085300 Sobic001G522400--Sobic001G448100 Sobic009G129600 Sobic009G129600 Sobic001G522400--Sobic009G129600 Sobic001G522400--Sobic009G000400 Sobic001G522400--Sobic002G079100 Sobic006G210200 Sobic006G210200 Sobic001G522400--Sobic006G210200 Sobic001G090300 Sobic001G090300 Sobic001G522400--Sobic001G090300 Sobic007G000400 Sobic007G000400 Sobic001G522400--Sobic007G000400 Sobic009G074700 Sobic009G074700 Sobic009G000400--Sobic009G074700 Sobic006G028700 Sobic006G028700 Sobic009G000400--Sobic006G028700 Sobic009G040800 Sobic009G040800 Sobic009G000400--Sobic009G040800 Sobic006G180700 Sobic006G180700 Sobic009G000400--Sobic006G180700 Sobic002G115500 Sobic002G115500 Sobic009G000400--Sobic002G115500 Sobic007G026000 Sobic007G026000 Sobic009G000400--Sobic007G026000 Sobic005G040900 Sobic005G040900 Sobic009G000400--Sobic005G040900 Sobic010G279900 Sobic010G279900 Sobic009G000400--Sobic010G279900 Sobic001G085700 Sobic001G085700 Sobic009G000400--Sobic001G085700 Sobic003G067201--Sobic003G397100 Sobic006G191200 Sobic006G191200 Sobic003G067201--Sobic006G191200 Sobic003G067201--Sobic001G448100 Sobic003G359400 Sobic003G359400 Sobic003G067201--Sobic003G359400 Sobic002G084400 Sobic002G084400 Sobic003G067201--Sobic002G084400 Sobic003G067201--Sobic003G124600 Sobic003G067201--Sobic002G079100 Sobic003G067201--Sobic010G143600 Sobic010G091500 Sobic010G091500 Sobic003G067201--Sobic010G091500
Octagon: transcription factors


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