Gene annotation
Transcriptome id Sobic.007G031300.3,Sobic.007G031300.4
Synonym Sb07g002730
Functional annotation endonuclease/exonuclease/phosphatase family domain containing protein, expressed
UniProt Q8W0T1 , C5YMZ3
Pfam PF03372
Panther DB PTHR22748 PTHR22748:SF1
NCBI CDD KOG1294; Apurinic/apyrimidinic endonuclease and related enzymes
KEGG Orthology -
Gene Ontology GO:0006281; DNA repair GO:0004518nuclease activity


Orthologs (automatic annotation)
TAIR AT3G48425 : DNAse I-like superfamily protein
RAP-DB (Rice) LOC_Os12g18200.1 : endonuclease/exonuclease/phosphatase family domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQJ91679 , PNT65230 , KQJ91680
Barley HORVU4Hr1G015070.9 , HORVU4Hr1G015070.8 , HORVU4Hr1G015070.5 , HORVU4Hr1G015070.4 , HORVU4Hr1G015070.7 , HORVU4Hr1G015070.6 , HORVU4Hr1G015070.1 , HORVU4Hr1G015070.3 , HORVU4Hr1G015070.2 , HORVU4Hr1G015070.11 , HORVU4Hr1G015070.10 , HORVU4Hr1G015070.12
Wheat TraesCS4B02G088400 , TraesCS4B02G088400 , TraesCS4D02G085900 , TraesCS4D02G085900 , TraesCS4A02G227500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G169400 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed -
2 Sobic.001G211500 LIG1 - Putative DNA ligase I, expressed K10747: DNA ligase 1
3 Sobic.004G129500 expressed protein -
4 Sobic.001G296800 WD repeat-containing protein 8, putative, expressed -
5 Sobic.002G430900 PWWP domain containing protein, expressed -
6 Sobic.003G028400 OsFBX234 - F-box domain containing protein, expressed -
7 Sobic.001G210000 CDT1B - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
8 Sobic.003G153900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.003G212600 ubiquitin-conjugating enzyme, putative, expressed K13960: UBE2T, ubiquitin-conjugating enzyme E2 T
10 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
11 Sobic.008G165200 OsFBX358 - F-box domain containing protein, expressed -
12 Sobic.010G103500 ATMAP70 protein, putative, expressed -
13 Sobic.001G212600 a_IG002N01.7, putative, expressed -
14 Sobic.003G411700 heat shock protein DnaJ, putative, expressed -
15 Sobic.001G361200 expressed protein -
16 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
17 Sobic.001G242300 expressed protein -
18 Sobic.003G360300 exostosin family domain containing protein, expressed -
19 Sobic.003G299500 expressed protein -
20 Sobic.010G143600 ATP-binding region, ATPase-like domain containing protein, expressed -


Gene co-expression network
sample Sobic007G031300 Sobic007G031300 Sobic008G169400 Sobic008G169400 Sobic007G031300--Sobic008G169400 Sobic001G211500 Sobic001G211500 Sobic007G031300--Sobic001G211500 Sobic004G129500 Sobic004G129500 Sobic007G031300--Sobic004G129500 Sobic001G296800 Sobic001G296800 Sobic007G031300--Sobic001G296800 Sobic002G430900 Sobic002G430900 Sobic007G031300--Sobic002G430900 Sobic003G028400 Sobic003G028400 Sobic007G031300--Sobic003G028400 Sobic001G210000 Sobic001G210000 Sobic007G031300--Sobic001G210000 Sobic003G153900 Sobic003G153900 Sobic007G031300--Sobic003G153900 Sobic003G212600 Sobic003G212600 Sobic007G031300--Sobic003G212600 Sobic001G079900 Sobic001G079900 Sobic008G169400--Sobic001G079900 Sobic008G169400--Sobic003G153900 Sobic008G169400--Sobic007G031300 Sobic009G141700 Sobic009G141700 Sobic008G169400--Sobic009G141700 Sobic002G370400 Sobic002G370400 Sobic008G169400--Sobic002G370400 Sobic001G494100 Sobic001G494100 Sobic008G169400--Sobic001G494100 Sobic002G293700 Sobic002G293700 Sobic008G169400--Sobic002G293700 Sobic009G158900 Sobic009G158900 Sobic008G169400--Sobic009G158900 Sobic003G397100 Sobic003G397100 Sobic008G169400--Sobic003G397100 Sobic006G106200 Sobic006G106200 Sobic001G211500--Sobic006G106200 Sobic007G209600 Sobic007G209600 Sobic001G211500--Sobic007G209600 Sobic001G211500--Sobic007G031300 Sobic009G052100 Sobic009G052100 Sobic001G211500--Sobic009G052100 Sobic003G411700 Sobic003G411700 Sobic001G211500--Sobic003G411700 Sobic001G211500--Sobic008G169400 Sobic007G076200 Sobic007G076200 Sobic001G211500--Sobic007G076200 Sobic002G271400 Sobic002G271400 Sobic001G211500--Sobic002G271400 Sobic010G024000 Sobic010G024000 Sobic001G211500--Sobic010G024000 Sobic007G036800 Sobic007G036800 Sobic004G129500--Sobic007G036800 Sobic010G103500 Sobic010G103500 Sobic004G129500--Sobic010G103500 Sobic004G129500--Sobic001G296800 Sobic004G129500--Sobic003G028400 Sobic004G129500--Sobic003G411700 Sobic002G426100 Sobic002G426100 Sobic004G129500--Sobic002G426100 Sobic002G123600 Sobic002G123600 Sobic004G129500--Sobic002G123600 Sobic002G043000 Sobic002G043000 Sobic004G129500--Sobic002G043000 Sobic001G361200 Sobic001G361200 Sobic004G129500--Sobic001G361200 Sobic009G212100 Sobic009G212100 Sobic001G296800--Sobic009G212100 Sobic004G315700 Sobic004G315700 Sobic001G296800--Sobic004G315700 Sobic001G296800--Sobic010G103500 Sobic001G487200 Sobic001G487200 Sobic001G296800--Sobic001G487200 Sobic001G296800--Sobic004G129500 Sobic001G296800--Sobic001G361200 Sobic001G296800--Sobic002G370400 Sobic001G212600 Sobic001G212600 Sobic001G296800--Sobic001G212600 Sobic001G296800--Sobic009G052100 Sobic007G125700 Sobic007G125700 Sobic002G430900--Sobic007G125700 Sobic002G219900 Sobic002G219900 Sobic002G430900--Sobic002G219900 Sobic010G269300 Sobic010G269300 Sobic002G430900--Sobic010G269300 Sobic010G149600 Sobic010G149600 Sobic002G430900--Sobic010G149600 Sobic009G192500 Sobic009G192500 Sobic002G430900--Sobic009G192500 Sobic002G017900 Sobic002G017900 Sobic002G430900--Sobic002G017900 Sobic001G395200 Sobic001G395200 Sobic002G430900--Sobic001G395200 Sobic009G006900 Sobic009G006900 Sobic002G430900--Sobic009G006900 Sobic005G120700 Sobic005G120700 Sobic002G430900--Sobic005G120700 Sobic003G028400--Sobic004G129500 Sobic003G331000 Sobic003G331000 Sobic003G028400--Sobic003G331000 Sobic003G259600 Sobic003G259600 Sobic003G028400--Sobic003G259600 Sobic001G123600 Sobic001G123600 Sobic003G028400--Sobic001G123600 Sobic003G028400--Sobic007G031300 Sobic003G028400--Sobic002G123600 Sobic001G465500 Sobic001G465500 Sobic003G028400--Sobic001G465500 Sobic007G030600 Sobic007G030600 Sobic003G028400--Sobic007G030600 Sobic001G242300 Sobic001G242300 Sobic003G028400--Sobic001G242300 Sobic001G006800 Sobic001G006800 Sobic001G210000--Sobic001G006800 Sobic001G210000--Sobic003G212600 Sobic001G210000--Sobic007G031300 Sobic009G087300 Sobic009G087300 Sobic001G210000--Sobic009G087300 Sobic001G210000--Sobic007G209600 Sobic009G049200 Sobic009G049200 Sobic001G210000--Sobic009G049200 Sobic006G242500 Sobic006G242500 Sobic001G210000--Sobic006G242500 Sobic004G287100 Sobic004G287100 Sobic001G210000--Sobic004G287100 Sobic005G163400 Sobic005G163400 Sobic001G210000--Sobic005G163400 Sobic003G351900 Sobic003G351900 Sobic003G153900--Sobic003G351900 Sobic003G153900--Sobic008G169400 Sobic002G021200 Sobic002G021200 Sobic003G153900--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic003G153900--Sobic006G281900 Sobic003G153900--Sobic001G079900 Sobic003G153900--Sobic002G370400 Sobic001G369800 Sobic001G369800 Sobic003G153900--Sobic001G369800 Sobic003G153900--Sobic009G212100 Sobic006G008300 Sobic006G008300 Sobic003G153900--Sobic006G008300 Sobic001G054700 Sobic001G054700 Sobic003G212600--Sobic001G054700 Sobic003G212600--Sobic007G076200 Sobic002G204400 Sobic002G204400 Sobic003G212600--Sobic002G204400 Sobic001G140700 Sobic001G140700 Sobic003G212600--Sobic001G140700 Sobic003G212600--Sobic009G087300 Sobic010G105400 Sobic010G105400 Sobic003G212600--Sobic010G105400 Sobic001G231200 Sobic001G231200 Sobic003G212600--Sobic001G231200 Sobic003G212600--Sobic002G021200 Sobic003G212600--Sobic001G296800
Octagon: transcription factors


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