Gene annotation
Transcriptome id Sobic.001G210000.2,Sobic.001G210000.1,Sobic.001G210000.3
Synonym Sb01g018570, CDT1, CDT1A, ATCDT1A
Functional annotation CDT1B - Putative DNA replication initiation protein, expressed
UniProt C5WXD9
Pfam PF16679 PF08839
Panther DB PTHR28637 PTHR28637:SF2
NCBI CDD KOG4762; DNA replication factor
KEGG Orthology K10727; chromatin licensing and DNA replication factor 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G54710 : homolog of yeast CDT1 B homolog of yeast CDT1 B
RAP-DB (Rice) LOC_Os10g34820.2,LOC_Os10g34820.1 : CDT1B - Putative DNA replication initiation protein, expressed
MaizeGDB (Corn) Zm00025a009515 , Zm00025a057223 , Zm00025a006512
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G006800 - -
2 Sobic.003G212600 ubiquitin-conjugating enzyme, putative, expressed K13960: UBE2T, ubiquitin-conjugating enzyme E2 T
3 Sobic.007G031300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
4 Sobic.009G087300 mitotic checkpoint family protein, putative, expressed -
5 Sobic.007G209600 ENT domain containing protein, expressed -
6 Sobic.009G049200 Spc97 / Spc98 family protein, putative, expressed K16571: TUBGCP4, gamma-tubulin complex component 4
7 Sobic.006G242500 CDT1B - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
8 Sobic.004G287100 tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
9 Sobic.005G163400 dnaJ domain containing protein, expressed -
10 Sobic.009G105400 OsFBX135 - F-box domain containing protein, expressed -
11 Sobic.001G537400 MYB family transcription factor, putative, expressed -
12 Sobic.001G211500 LIG1 - Putative DNA ligase I, expressed K10747: DNA ligase 1
13 Sobic.009G207400 ATP binding protein, putative, expressed -
14 Sobic.003G321600 PPR repeat domain containing protein, putative, expressed -
15 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.004G343200 dehydrogenase, putative, expressed K00121: frmA, ADH5, S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase
17 Sobic.001G039300 GTPase of unknown function domain containing protein, putative, expressed -
18 Sobic.001G122100 protein kinase family protein, putative, expressed K08866: TTK, serine/threonine-protein kinase TTK/MPS1
19 Sobic.002G204400 kinesin motor protein-related, putative, expressed K11498: centromeric protein E
20 Sobic.003G311500 double-stranded RNA binding motif containing protein, expressed -


Gene co-expression network
sample Sobic001G210000 Sobic001G210000 Sobic001G006800 Sobic001G006800 Sobic001G210000--Sobic001G006800 Sobic003G212600 Sobic003G212600 Sobic001G210000--Sobic003G212600 Sobic007G031300 Sobic007G031300 Sobic001G210000--Sobic007G031300 Sobic009G087300 Sobic009G087300 Sobic001G210000--Sobic009G087300 Sobic007G209600 Sobic007G209600 Sobic001G210000--Sobic007G209600 Sobic009G049200 Sobic009G049200 Sobic001G210000--Sobic009G049200 Sobic006G242500 Sobic006G242500 Sobic001G210000--Sobic006G242500 Sobic004G287100 Sobic004G287100 Sobic001G210000--Sobic004G287100 Sobic005G163400 Sobic005G163400 Sobic001G210000--Sobic005G163400 Sobic001G006800--Sobic005G163400 Sobic001G006800--Sobic001G210000 Sobic009G077300 Sobic009G077300 Sobic001G006800--Sobic009G077300 Sobic010G026100 Sobic010G026100 Sobic001G006800--Sobic010G026100 Sobic002G050700 Sobic002G050700 Sobic001G006800--Sobic002G050700 Sobic006G221800 Sobic006G221800 Sobic001G006800--Sobic006G221800 Sobic001G390400 Sobic001G390400 Sobic001G006800--Sobic001G390400 Sobic001G054700 Sobic001G054700 Sobic001G006800--Sobic001G054700 Sobic005G153000 Sobic005G153000 Sobic001G006800--Sobic005G153000 Sobic003G212600--Sobic001G054700 Sobic007G076200 Sobic007G076200 Sobic003G212600--Sobic007G076200 Sobic002G204400 Sobic002G204400 Sobic003G212600--Sobic002G204400 Sobic001G140700 Sobic001G140700 Sobic003G212600--Sobic001G140700 Sobic003G212600--Sobic009G087300 Sobic010G105400 Sobic010G105400 Sobic003G212600--Sobic010G105400 Sobic001G231200 Sobic001G231200 Sobic003G212600--Sobic001G231200 Sobic002G021200 Sobic002G021200 Sobic003G212600--Sobic002G021200 Sobic001G296800 Sobic001G296800 Sobic003G212600--Sobic001G296800 Sobic008G169400 Sobic008G169400 Sobic007G031300--Sobic008G169400 Sobic001G211500 Sobic001G211500 Sobic007G031300--Sobic001G211500 Sobic004G129500 Sobic004G129500 Sobic007G031300--Sobic004G129500 Sobic007G031300--Sobic001G296800 Sobic002G430900 Sobic002G430900 Sobic007G031300--Sobic002G430900 Sobic003G028400 Sobic003G028400 Sobic007G031300--Sobic003G028400 Sobic007G031300--Sobic001G210000 Sobic003G153900 Sobic003G153900 Sobic007G031300--Sobic003G153900 Sobic007G031300--Sobic003G212600 Sobic009G087300--Sobic002G204400 Sobic009G087300--Sobic010G105400 Sobic005G144600 Sobic005G144600 Sobic009G087300--Sobic005G144600 Sobic002G303800 Sobic002G303800 Sobic009G087300--Sobic002G303800 Sobic003G201000 Sobic003G201000 Sobic009G087300--Sobic003G201000 Sobic001G122100 Sobic001G122100 Sobic009G087300--Sobic001G122100 Sobic003G444300 Sobic003G444300 Sobic009G087300--Sobic003G444300 Sobic006G281400 Sobic006G281400 Sobic009G087300--Sobic006G281400 Sobic005G000500 Sobic005G000500 Sobic009G087300--Sobic005G000500 Sobic007G209600--Sobic001G211500 Sobic007G209600--Sobic004G287100 Sobic002G219900 Sobic002G219900 Sobic007G209600--Sobic002G219900 Sobic007G209600--Sobic003G212600 Sobic001G300000 Sobic001G300000 Sobic007G209600--Sobic001G300000 Sobic003G311500 Sobic003G311500 Sobic007G209600--Sobic003G311500 Sobic007G209600--Sobic001G210000 Sobic004G343200 Sobic004G343200 Sobic007G209600--Sobic004G343200 Sobic004G352100 Sobic004G352100 Sobic007G209600--Sobic004G352100 Sobic009G052100 Sobic009G052100 Sobic009G049200--Sobic009G052100 Sobic001G507200 Sobic001G507200 Sobic009G049200--Sobic001G507200 Sobic001G143600 Sobic001G143600 Sobic009G049200--Sobic001G143600 Sobic003G250900 Sobic003G250900 Sobic009G049200--Sobic003G250900 Sobic010G250800 Sobic010G250800 Sobic009G049200--Sobic010G250800 Sobic004G231200 Sobic004G231200 Sobic009G049200--Sobic004G231200 Sobic004G307900 Sobic004G307900 Sobic009G049200--Sobic004G307900 Sobic003G423600 Sobic003G423600 Sobic009G049200--Sobic003G423600 Sobic008G015200 Sobic008G015200 Sobic009G049200--Sobic008G015200 Sobic006G242500--Sobic001G143600 Sobic006G242500--Sobic001G210000 Sobic004G198900 Sobic004G198900 Sobic006G242500--Sobic004G198900 Sobic003G274400 Sobic003G274400 Sobic006G242500--Sobic003G274400 Sobic009G045300 Sobic009G045300 Sobic006G242500--Sobic009G045300 Sobic002G318600 Sobic002G318600 Sobic006G242500--Sobic002G318600 Sobic006G242500--Sobic004G307900 Sobic006G188800 Sobic006G188800 Sobic006G242500--Sobic006G188800 Sobic001G397800 Sobic001G397800 Sobic006G242500--Sobic001G397800 Sobic004G287100--Sobic007G209600 Sobic005G120700 Sobic005G120700 Sobic004G287100--Sobic005G120700 Sobic001G061800 Sobic001G061800 Sobic004G287100--Sobic001G061800 Sobic001G033000 Sobic001G033000 Sobic004G287100--Sobic001G033000 Sobic004G287100--Sobic002G318600 Sobic004G287100--Sobic001G210000 Sobic004G287100--Sobic002G430900 Sobic004G287100--Sobic010G250800 Sobic004G287100--Sobic001G122100 Sobic010G024500 Sobic010G024500 Sobic005G163400--Sobic010G024500 Sobic005G163400--Sobic001G390400 Sobic005G163400--Sobic009G077300 Sobic003G104100 Sobic003G104100 Sobic005G163400--Sobic003G104100 Sobic008G052300 Sobic008G052300 Sobic005G163400--Sobic008G052300 Sobic008G190000 Sobic008G190000 Sobic005G163400--Sobic008G190000 Sobic005G163400--Sobic001G054700 Sobic005G163400--Sobic005G153000 Sobic005G163400--Sobic002G050700
Octagon: transcription factors


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