Gene annotation
Transcriptome id Sobic.009G207400.1
Synonym
Functional annotation ATP binding protein, putative, expressed
UniProt C5Z1E4
Pfam PF12169 PF13177
Panther DB PTHR11669 PTHR11669:SF15
NCBI CDD KOG0989; Replication factor C, subunit RFC4
KEGG Orthology -
Gene Ontology GO:0003887; DNA-directed DNA polymerase activity


Orthologs (automatic annotation)
TAIR AT4G18820 : AAA-type ATPase family protein
RAP-DB (Rice) LOC_Os05g45340.1 : ATP binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a044270 , Zm00025a039018 , Zm00025a027707
Brachypodium PNT70845 , PNT70846 , KQK09590 , KQK05257 , KQK05256 , KQK05255
Barley HORVU1Hr1G048670.29 , HORVU1Hr1G048670.60 , HORVU1Hr1G048670.52 , HORVU1Hr1G048670.53 , HORVU1Hr1G048670.50 , HORVU1Hr1G048670.51 , HORVU1Hr1G048670.54 , HORVU1Hr1G048670.55 , HORVU1Hr1G048670.58 , HORVU1Hr1G048670.59 , HORVU1Hr1G048670.12 , HORVU1Hr1G048670.13 , HORVU1Hr1G048670.10 , HORVU1Hr1G048670.11 , HORVU1Hr1G081530.4 , HORVU1Hr1G081530.5 , HORVU1Hr1G081530.6 , HORVU1Hr1G081530.7 , HORVU1Hr1G081530.1 , HORVU1Hr1G081530.2 , HORVU1Hr1G081530.3 , HORVU1Hr1G048670.18 , HORVU1Hr1G048670.19 , HORVU1Hr1G048670.16 , HORVU1Hr1G048670.17 , HORVU1Hr1G048670.14 , HORVU1Hr1G048670.15 , HORVU1Hr1G048670.27 , HORVU1Hr1G048670.26 , HORVU1Hr1G048670.24 , HORVU1Hr1G048670.23 , HORVU1Hr1G048670.22 , HORVU1Hr1G048670.21 , HORVU1Hr1G048670.20 , HORVU1Hr1G048670.49 , HORVU1Hr1G048670.48 , HORVU1Hr1G048670.43 , HORVU1Hr1G048670.42 , HORVU1Hr1G048670.28 , HORVU1Hr1G048670.34 , HORVU1Hr1G048670.35 , HORVU1Hr1G048670.36 , HORVU1Hr1G048670.37 , HORVU1Hr1G048670.30 , HORVU1Hr1G048670.31 , HORVU1Hr1G048670.32 , HORVU1Hr1G048670.33 , HORVU1Hr1G048670.39 , HORVU1Hr1G048670.9 , HORVU1Hr1G048670.5 , HORVU1Hr1G048670.6 , HORVU1Hr1G048670.7 , HORVU1Hr1G048670.1 , HORVU1Hr1G048670.3 , HORVU1Hr1G048670.45 , HORVU1Hr1G048670.44 , HORVU1Hr1G048670.47 , HORVU1Hr1G048670.46 , HORVU1Hr1G048670.41 , HORVU1Hr1G048670.40 , HORVU1Hr1G048670.8 , HORVU1Hr1G048670.4 , HORVU1Hr1G048670.2 , HORVU1Hr1G048670.25
Wheat TraesCS3A02G281700 , TraesCS3B02G315400 , TraesCS1D02G352300 , TraesCS3B02G315400 , TraesCS3B02G315400 , TraesCS1A02G348900 , TraesCS1A02G348900 , TraesCS1B02G364000 , TraesCS1B02G364000 , TraesCS1D02G352300 , TraesCS3D02G281700 , TraesCS3D02G281700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G163400 dnaJ domain containing protein, expressed -
2 Sobic.009G200000 expressed protein -
3 Sobic.008G042200 DUF623 domain containing protein, expressed -
4 Sobic.005G092700 expressed protein -
5 Sobic.010G250400 OsSub52 - Putative Subtilisin homologue, expressed -
6 Sobic.001G244900 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -
7 Sobic.003G147500 PHS1, putative, expressed K14165: atypical dual specificity phosphatase
8 Sobic.003G104100 expressed protein -
9 Sobic.008G052300 plant protein of unknown function DUF869 domain containing protein, expressed -
10 Sobic.001G390400 expressed protein -
11 Sobic.009G224300 expressed protein -
12 Sobic.008G190000 leucine-rich repeat family protein, putative, expressed -
13 Sobic.004G115700 extra-large G-protein-related, putative, expressed -
14 Sobic.006G016700 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
15 Sobic.005G153000 agenet domain containing protein, expressed -
16 Sobic.009G077300 protein kinase, putative, expressed -
17 Sobic.010G024500 expressed protein -
18 Sobic.008G048966 - -
19 Sobic.006G008300 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
20 Sobic.002G168000 expressed protein -


Gene co-expression network
sample Sobic009G207400 Sobic009G207400 Sobic005G163400 Sobic005G163400 Sobic009G207400--Sobic005G163400 Sobic009G200000 Sobic009G200000 Sobic009G207400--Sobic009G200000 Sobic008G042200 Sobic008G042200 Sobic009G207400--Sobic008G042200 Sobic005G092700 Sobic005G092700 Sobic009G207400--Sobic005G092700 Sobic010G250400 Sobic010G250400 Sobic009G207400--Sobic010G250400 Sobic001G244900 Sobic001G244900 Sobic009G207400--Sobic001G244900 Sobic003G147500 Sobic003G147500 Sobic009G207400--Sobic003G147500 Sobic003G104100 Sobic003G104100 Sobic009G207400--Sobic003G104100 Sobic008G052300 Sobic008G052300 Sobic009G207400--Sobic008G052300 Sobic010G024500 Sobic010G024500 Sobic005G163400--Sobic010G024500 Sobic001G390400 Sobic001G390400 Sobic005G163400--Sobic001G390400 Sobic009G077300 Sobic009G077300 Sobic005G163400--Sobic009G077300 Sobic005G163400--Sobic003G104100 Sobic005G163400--Sobic008G052300 Sobic008G190000 Sobic008G190000 Sobic005G163400--Sobic008G190000 Sobic001G054700 Sobic001G054700 Sobic005G163400--Sobic001G054700 Sobic005G153000 Sobic005G153000 Sobic005G163400--Sobic005G153000 Sobic002G050700 Sobic002G050700 Sobic005G163400--Sobic002G050700 Sobic009G200000--Sobic008G042200 Sobic004G115700 Sobic004G115700 Sobic009G200000--Sobic004G115700 Sobic009G200000--Sobic005G092700 Sobic009G200000--Sobic008G190000 Sobic006G240900 Sobic006G240900 Sobic009G200000--Sobic006G240900 Sobic009G200000--Sobic009G207400 Sobic001G075700 Sobic001G075700 Sobic009G200000--Sobic001G075700 Sobic009G200000--Sobic001G244900 Sobic005G125300 Sobic005G125300 Sobic009G200000--Sobic005G125300 Sobic008G042200--Sobic009G200000 Sobic008G042200--Sobic005G092700 Sobic008G042200--Sobic004G115700 Sobic008G042200--Sobic008G190000 Sobic003G366000 Sobic003G366000 Sobic008G042200--Sobic003G366000 Sobic008G042200--Sobic006G240900 Sobic006G110850 Sobic006G110850 Sobic008G042200--Sobic006G110850 Sobic008G042200--Sobic005G125300 Sobic008G042200--Sobic009G207400 Sobic005G092700--Sobic008G190000 Sobic005G092700--Sobic008G042200 Sobic005G092700--Sobic009G200000 Sobic005G092700--Sobic004G115700 Sobic005G092700--Sobic003G366000 Sobic001G381100 Sobic001G381100 Sobic005G092700--Sobic001G381100 Sobic001G160000 Sobic001G160000 Sobic005G092700--Sobic001G160000 Sobic005G092700--Sobic001G390400 Sobic005G092700--Sobic001G075700 Sobic009G188900 Sobic009G188900 Sobic010G250400--Sobic009G188900 Sobic010G250400--Sobic005G153000 Sobic002G021200 Sobic002G021200 Sobic010G250400--Sobic002G021200 Sobic010G250400--Sobic003G147500 Sobic002G168000 Sobic002G168000 Sobic010G250400--Sobic002G168000 Sobic010G250400--Sobic009G207400 Sobic007G187700 Sobic007G187700 Sobic010G250400--Sobic007G187700 Sobic010G250400--Sobic001G054700 Sobic001G532800 Sobic001G532800 Sobic010G250400--Sobic001G532800 Sobic008G048966 Sobic008G048966 Sobic001G244900--Sobic008G048966 Sobic001G244900--Sobic005G092700 Sobic001G244900--Sobic009G200000 Sobic001G244900--Sobic009G207400 Sobic001G008300 Sobic001G008300 Sobic001G244900--Sobic001G008300 Sobic004G179800 Sobic004G179800 Sobic001G244900--Sobic004G179800 Sobic006G142500 Sobic006G142500 Sobic001G244900--Sobic006G142500 Sobic001G064600 Sobic001G064600 Sobic001G244900--Sobic001G064600 Sobic001G244900--Sobic001G390400 Sobic006G016700 Sobic006G016700 Sobic003G147500--Sobic006G016700 Sobic006G275500 Sobic006G275500 Sobic003G147500--Sobic006G275500 Sobic009G224300 Sobic009G224300 Sobic003G147500--Sobic009G224300 Sobic008G090000 Sobic008G090000 Sobic003G147500--Sobic008G090000 Sobic003G147500--Sobic010G250400 Sobic003G147500--Sobic002G168000 Sobic007G219100 Sobic007G219100 Sobic003G147500--Sobic007G219100 Sobic004G123200 Sobic004G123200 Sobic003G147500--Sobic004G123200 Sobic009G146250 Sobic009G146250 Sobic003G147500--Sobic009G146250 Sobic001G395200 Sobic001G395200 Sobic003G104100--Sobic001G395200 Sobic003G104100--Sobic008G052300 Sobic003G104100--Sobic005G163400 Sobic001G425700 Sobic001G425700 Sobic003G104100--Sobic001G425700 Sobic006G067700 Sobic006G067700 Sobic003G104100--Sobic006G067700 Sobic003G104100--Sobic010G024500 Sobic003G104100--Sobic004G179800 Sobic006G084300 Sobic006G084300 Sobic003G104100--Sobic006G084300 Sobic009G259900 Sobic009G259900 Sobic003G104100--Sobic009G259900 Sobic004G269100 Sobic004G269100 Sobic008G052300--Sobic004G269100 Sobic008G052300--Sobic003G104100 Sobic009G127800 Sobic009G127800 Sobic008G052300--Sobic009G127800 Sobic006G221300 Sobic006G221300 Sobic008G052300--Sobic006G221300 Sobic008G052300--Sobic005G163400 Sobic002G259200 Sobic002G259200 Sobic008G052300--Sobic002G259200 Sobic008G052300--Sobic006G016700 Sobic008G052300--Sobic005G153000 Sobic009G225500 Sobic009G225500 Sobic008G052300--Sobic009G225500
Octagon: transcription factors


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