Gene annotation
Transcriptome id Sobic.003G147500.1,Sobic.003G147500.2
Synonym PHS1, Sb03g012770
Functional annotation PHS1, putative, expressed
UniProt A0A1W0VXF0 , C5XIS9
Pfam PF00782 PF09192
Panther DB PTHR10159 PTHR10159:SF346
NCBI CDD KOG1716; Dual specificity phosphatase
KEGG Orthology K14165; atypical dual specificity phosphatase
Gene Ontology GO:0008138; protein tyrosine/serine/threonine phosphatase activity GO:0006470protein dephosphorylation


Orthologs (automatic annotation)
TAIR AT5G23720 : dual specificity protein phosphatase family protein
RAP-DB (Rice) LOC_Os01g20940.1 : PHS1, putative, expressed
MaizeGDB (Corn) Zm00025a024327
Brachypodium KQK04126 , KQK04127
Barley HORVU1Hr1G065070.3 , HORVU1Hr1G065070.2 , HORVU1Hr1G065070.1 , HORVU1Hr1G065070.7 , HORVU1Hr1G065070.6 , HORVU1Hr1G065070.5 , HORVU1Hr1G065070.4
Wheat TraesCS1A02G265000 , TraesCS1D02G265200 , TraesCS1D02G265200 , TraesCS1D02G265200 , TraesCS1D02G265200 , TraesCS1D02G265200 , TraesCS1D02G265200 , TraesCS1D02G265200 , TraesCS1A02G265000 , TraesCS1B02G275700 , TraesCS1B02G275700 , TraesCS1B02G275700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G016700 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
2 Sobic.006G275500 regulator of chromosome condensation, putative, expressed -
3 Sobic.009G224300 expressed protein -
4 Sobic.008G090000 oxysterol-binding protein, putative, expressed -
5 Sobic.010G250400 OsSub52 - Putative Subtilisin homologue, expressed -
6 Sobic.002G168000 expressed protein -
7 Sobic.007G219100 phosphatidylinositol transfer, putative, expressed -
8 Sobic.004G123200 MYB family transcription factor, putative, expressed -
9 Sobic.009G146250 - -
10 Sobic.009G207400 ATP binding protein, putative, expressed -
11 Sobic.007G187700 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
12 Sobic.009G188900 acyltransferase, putative, expressed K13513: LCLAT1, lysocardiolipin and lysophospholipid acyltransferase
13 Sobic.002G256900 acyl-ACP thioesterase, putative, expressed K10782: fatty acyl-ACP thioesterase A
14 Sobic.007G218100 transmembrane receptor, putative, expressed -
15 Sobic.001G532800 RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
16 Sobic.003G350400 thaumatin, putative, expressed -
17 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
18 Sobic.005G153000 agenet domain containing protein, expressed -
19 Sobic.002G055800 zinc finger, C3HC4 type domain containing protein, expressed K16277: E3 ubiquitin-protein ligase DRIP
20 Sobic.004G291200 - -


Gene co-expression network
sample Sobic003G147500 Sobic003G147500 Sobic006G016700 Sobic006G016700 Sobic003G147500--Sobic006G016700 Sobic006G275500 Sobic006G275500 Sobic003G147500--Sobic006G275500 Sobic009G224300 Sobic009G224300 Sobic003G147500--Sobic009G224300 Sobic008G090000 Sobic008G090000 Sobic003G147500--Sobic008G090000 Sobic010G250400 Sobic010G250400 Sobic003G147500--Sobic010G250400 Sobic002G168000 Sobic002G168000 Sobic003G147500--Sobic002G168000 Sobic007G219100 Sobic007G219100 Sobic003G147500--Sobic007G219100 Sobic004G123200 Sobic004G123200 Sobic003G147500--Sobic004G123200 Sobic009G146250 Sobic009G146250 Sobic003G147500--Sobic009G146250 Sobic006G016700--Sobic003G147500 Sobic006G016700--Sobic006G275500 Sobic002G256900 Sobic002G256900 Sobic006G016700--Sobic002G256900 Sobic006G226000 Sobic006G226000 Sobic006G016700--Sobic006G226000 Sobic007G050800 Sobic007G050800 Sobic006G016700--Sobic007G050800 Sobic006G016700--Sobic002G168000 Sobic007G187700 Sobic007G187700 Sobic006G016700--Sobic007G187700 Sobic008G052300 Sobic008G052300 Sobic006G016700--Sobic008G052300 Sobic005G153000 Sobic005G153000 Sobic006G016700--Sobic005G153000 Sobic006G275500--Sobic006G016700 Sobic001G104500 Sobic001G104500 Sobic006G275500--Sobic001G104500 Sobic006G275500--Sobic002G168000 Sobic006G275500--Sobic003G147500 Sobic006G275500--Sobic007G187700 Sobic006G275500--Sobic008G090000 Sobic009G077300 Sobic009G077300 Sobic006G275500--Sobic009G077300 Sobic006G094100 Sobic006G094100 Sobic006G275500--Sobic006G094100 Sobic006G275500--Sobic009G146250 Sobic009G224300--Sobic003G147500 Sobic009G224300--Sobic006G016700 Sobic004G286200 Sobic004G286200 Sobic009G224300--Sobic004G286200 Sobic001G493100 Sobic001G493100 Sobic009G224300--Sobic001G493100 Sobic009G224300--Sobic007G219100 Sobic009G207400 Sobic009G207400 Sobic009G224300--Sobic009G207400 Sobic003G350400 Sobic003G350400 Sobic009G224300--Sobic003G350400 Sobic007G082000 Sobic007G082000 Sobic009G224300--Sobic007G082000 Sobic010G257000 Sobic010G257000 Sobic009G224300--Sobic010G257000 Sobic008G090000--Sobic006G275500 Sobic008G090000--Sobic003G147500 Sobic006G084300 Sobic006G084300 Sobic008G090000--Sobic006G084300 Sobic008G090000--Sobic006G016700 Sobic008G083500 Sobic008G083500 Sobic008G090000--Sobic008G083500 Sobic008G090000--Sobic009G146250 Sobic008G090000--Sobic002G168000 Sobic009G188900 Sobic009G188900 Sobic008G090000--Sobic009G188900 Sobic002G362200 Sobic002G362200 Sobic008G090000--Sobic002G362200 Sobic010G250400--Sobic009G188900 Sobic010G250400--Sobic005G153000 Sobic002G021200 Sobic002G021200 Sobic010G250400--Sobic002G021200 Sobic010G250400--Sobic003G147500 Sobic010G250400--Sobic002G168000 Sobic010G250400--Sobic009G207400 Sobic010G250400--Sobic007G187700 Sobic001G054700 Sobic001G054700 Sobic010G250400--Sobic001G054700 Sobic001G532800 Sobic001G532800 Sobic010G250400--Sobic001G532800 Sobic002G168000--Sobic007G187700 Sobic002G168000--Sobic005G153000 Sobic002G168000--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic002G168000--Sobic006G281900 Sobic002G168000--Sobic006G275500 Sobic002G168000--Sobic009G188900 Sobic002G168000--Sobic009G077300 Sobic002G168000--Sobic006G016700 Sobic002G168000--Sobic001G104500 Sobic007G219100--Sobic003G147500 Sobic003G292700 Sobic003G292700 Sobic007G219100--Sobic003G292700 Sobic003G409600 Sobic003G409600 Sobic007G219100--Sobic003G409600 Sobic007G219100--Sobic009G224300 Sobic001G407100 Sobic001G407100 Sobic007G219100--Sobic001G407100 Sobic009G225500 Sobic009G225500 Sobic007G219100--Sobic009G225500 Sobic006G255300 Sobic006G255300 Sobic007G219100--Sobic006G255300 Sobic007G219100--Sobic010G250400 Sobic007G219100--Sobic006G016700 Sobic002G055800 Sobic002G055800 Sobic004G123200--Sobic002G055800 Sobic009G012500 Sobic009G012500 Sobic004G123200--Sobic009G012500 Sobic004G222150 Sobic004G222150 Sobic004G123200--Sobic004G222150 Sobic006G083900 Sobic006G083900 Sobic004G123200--Sobic006G083900 Sobic004G123200--Sobic006G226000 Sobic004G123200--Sobic002G256900 Sobic006G217800 Sobic006G217800 Sobic004G123200--Sobic006G217800 Sobic002G266300 Sobic002G266300 Sobic004G123200--Sobic002G266300 Sobic001G393101 Sobic001G393101 Sobic004G123200--Sobic001G393101 Sobic004G156200 Sobic004G156200 Sobic009G146250--Sobic004G156200 Sobic006G195500 Sobic006G195500 Sobic009G146250--Sobic006G195500 Sobic009G146250--Sobic002G021200 Sobic009G146250--Sobic006G275500 Sobic006G120600 Sobic006G120600 Sobic009G146250--Sobic006G120600 Sobic009G146250--Sobic007G187700 Sobic001G304800 Sobic001G304800 Sobic009G146250--Sobic001G304800 Sobic005G068800 Sobic005G068800 Sobic009G146250--Sobic005G068800 Sobic001G377700 Sobic001G377700 Sobic009G146250--Sobic001G377700
Octagon: transcription factors


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