Gene annotation
Transcriptome id Sobic.001G532800.1
Synonym Sb01g049590, RSP31, ATRSP31
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5X118
Pfam PF00076
Panther DB PTHR24012
NCBI CDD KOG0106; Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)
KEGG Orthology K12893; splicing factor, arginine/serine-rich 4/5/6
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G61860 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os04g02870.2 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a053526
Brachypodium KQK24010 , KQK24009
Barley HORVU4Hr1G088790.5 , HORVU4Hr1G088790.2 , HORVU4Hr1G088790.3 , HORVU4Hr1G088790.1 , HORVU4Hr1G088790.6 , HORVU4Hr1G088790.7 , HORVU4Hr1G088790.4
Wheat TraesCS5A02G555800 , TraesCS4B02G398900 , TraesCSU02G114200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G218100 transmembrane receptor, putative, expressed -
2 Sobic.007G112100 enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed K00208: enoyl-[acyl-carrier protein] reductase I
3 Sobic.002G236700 TMV-MP30 binding protein 2C, putative, expressed -
4 Sobic.010G250400 OsSub52 - Putative Subtilisin homologue, expressed -
5 Sobic.002G230800 expressed protein -
6 Sobic.002G158500 ankyrin, putative, expressed -
7 Sobic.003G147500 PHS1, putative, expressed K14165: atypical dual specificity phosphatase
8 Sobic.009G109300 POLA4 - Putative DNA polymerase alpha complex subunit, expressed K02684: DNA primase small subunit
9 Sobic.008G100700 SSXT protein, putative, expressed -
10 Sobic.001G140700 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
11 Sobic.006G275500 regulator of chromosome condensation, putative, expressed -
12 Sobic.007G125300 BRCA1 C Terminus domain containing protein, expressed -
13 Sobic.007G187700 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
14 Sobic.006G094100 expressed protein -
15 Sobic.009G188900 acyltransferase, putative, expressed K13513: LCLAT1, lysocardiolipin and lysophospholipid acyltransferase
16 Sobic.004G052200 expressed protein -
17 Sobic.002G168000 expressed protein -
18 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
19 Sobic.001G104500 growth-regulating factor, putative, expressed -
20 Sobic.002G246900 expressed protein -


Gene co-expression network
sample Sobic001G532800 Sobic001G532800 Sobic007G218100 Sobic007G218100 Sobic001G532800--Sobic007G218100 Sobic007G112100 Sobic007G112100 Sobic001G532800--Sobic007G112100 Sobic002G236700 Sobic002G236700 Sobic001G532800--Sobic002G236700 Sobic010G250400 Sobic010G250400 Sobic001G532800--Sobic010G250400 Sobic002G230800 Sobic002G230800 Sobic001G532800--Sobic002G230800 Sobic002G158500 Sobic002G158500 Sobic001G532800--Sobic002G158500 Sobic003G147500 Sobic003G147500 Sobic001G532800--Sobic003G147500 Sobic009G109300 Sobic009G109300 Sobic001G532800--Sobic009G109300 Sobic008G100700 Sobic008G100700 Sobic001G532800--Sobic008G100700 Sobic007G218100--Sobic001G532800 Sobic001G304800 Sobic001G304800 Sobic007G218100--Sobic001G304800 Sobic004G052200 Sobic004G052200 Sobic007G218100--Sobic004G052200 Sobic007G218100--Sobic002G230800 Sobic003G246800 Sobic003G246800 Sobic007G218100--Sobic003G246800 Sobic006G275500 Sobic006G275500 Sobic007G218100--Sobic006G275500 Sobic002G392500 Sobic002G392500 Sobic007G218100--Sobic002G392500 Sobic001G104500 Sobic001G104500 Sobic007G218100--Sobic001G104500 Sobic008G159901 Sobic008G159901 Sobic007G218100--Sobic008G159901 Sobic007G112100--Sobic009G109300 Sobic007G112100--Sobic001G532800 Sobic004G032900 Sobic004G032900 Sobic007G112100--Sobic004G032900 Sobic007G112100--Sobic002G158500 Sobic007G112100--Sobic002G236700 Sobic006G120600 Sobic006G120600 Sobic007G112100--Sobic006G120600 Sobic001G140700 Sobic001G140700 Sobic007G112100--Sobic001G140700 Sobic002G304400 Sobic002G304400 Sobic007G112100--Sobic002G304400 Sobic007G079600 Sobic007G079600 Sobic007G112100--Sobic007G079600 Sobic002G246900 Sobic002G246900 Sobic002G236700--Sobic002G246900 Sobic002G236700--Sobic001G140700 Sobic002G236700--Sobic001G532800 Sobic003G107200 Sobic003G107200 Sobic002G236700--Sobic003G107200 Sobic002G236700--Sobic009G109300 Sobic002G236700--Sobic007G112100 Sobic002G315400 Sobic002G315400 Sobic002G236700--Sobic002G315400 Sobic002G236700--Sobic007G218100 Sobic010G191000 Sobic010G191000 Sobic002G236700--Sobic010G191000 Sobic009G188900 Sobic009G188900 Sobic010G250400--Sobic009G188900 Sobic005G153000 Sobic005G153000 Sobic010G250400--Sobic005G153000 Sobic002G021200 Sobic002G021200 Sobic010G250400--Sobic002G021200 Sobic010G250400--Sobic003G147500 Sobic002G168000 Sobic002G168000 Sobic010G250400--Sobic002G168000 Sobic009G207400 Sobic009G207400 Sobic010G250400--Sobic009G207400 Sobic007G187700 Sobic007G187700 Sobic010G250400--Sobic007G187700 Sobic001G054700 Sobic001G054700 Sobic010G250400--Sobic001G054700 Sobic010G250400--Sobic001G532800 Sobic001G238900 Sobic001G238900 Sobic002G230800--Sobic001G238900 Sobic010G105400 Sobic010G105400 Sobic002G230800--Sobic010G105400 Sobic006G124400 Sobic006G124400 Sobic002G230800--Sobic006G124400 Sobic002G230800--Sobic001G054700 Sobic003G179500 Sobic003G179500 Sobic002G230800--Sobic003G179500 Sobic002G230800--Sobic009G109300 Sobic002G230800--Sobic007G218100 Sobic002G230800--Sobic002G246900 Sobic003G244000 Sobic003G244000 Sobic002G230800--Sobic003G244000 Sobic002G158500--Sobic001G532800 Sobic002G158500--Sobic007G112100 Sobic002G158500--Sobic009G109300 Sobic005G068800 Sobic005G068800 Sobic002G158500--Sobic005G068800 Sobic009G146250 Sobic009G146250 Sobic002G158500--Sobic009G146250 Sobic007G125300 Sobic007G125300 Sobic002G158500--Sobic007G125300 Sobic002G158500--Sobic007G187700 Sobic003G084200 Sobic003G084200 Sobic002G158500--Sobic003G084200 Sobic002G158500--Sobic002G230800 Sobic006G016700 Sobic006G016700 Sobic003G147500--Sobic006G016700 Sobic003G147500--Sobic006G275500 Sobic009G224300 Sobic009G224300 Sobic003G147500--Sobic009G224300 Sobic008G090000 Sobic008G090000 Sobic003G147500--Sobic008G090000 Sobic003G147500--Sobic010G250400 Sobic003G147500--Sobic002G168000 Sobic007G219100 Sobic007G219100 Sobic003G147500--Sobic007G219100 Sobic004G123200 Sobic004G123200 Sobic003G147500--Sobic004G123200 Sobic003G147500--Sobic009G146250 Sobic009G109300--Sobic007G112100 Sobic006G051000 Sobic006G051000 Sobic009G109300--Sobic006G051000 Sobic010G103700 Sobic010G103700 Sobic009G109300--Sobic010G103700 Sobic006G195500 Sobic006G195500 Sobic009G109300--Sobic006G195500 Sobic009G109300--Sobic001G238900 Sobic009G109300--Sobic002G230800 Sobic003G183700 Sobic003G183700 Sobic009G109300--Sobic003G183700 Sobic009G109300--Sobic003G179500 Sobic009G109300--Sobic002G246900 Sobic007G113300 Sobic007G113300 Sobic008G100700--Sobic007G113300 Sobic004G082700 Sobic004G082700 Sobic008G100700--Sobic004G082700 Sobic002G218600 Sobic002G218600 Sobic008G100700--Sobic002G218600 Sobic008G100700--Sobic001G532800 Sobic002G303800 Sobic002G303800 Sobic008G100700--Sobic002G303800 Sobic001G397000 Sobic001G397000 Sobic008G100700--Sobic001G397000 Sobic008G100700--Sobic010G191000 Sobic008G100700--Sobic007G218100 Sobic008G100700--Sobic003G179500
Octagon: transcription factors


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