Gene annotation
Transcriptome id Sobic.008G100700.1
Synonym Sb08g015330, GIF3
Functional annotation SSXT protein, putative, expressed
UniProt C5YNU2
Pfam PF05030
Panther DB PTHR23107 PTHR23107:SF5
NCBI CDD KOG3227; Calcium-responsive transcription coactivator
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G00850 : GRF1-interacting factor 3
RAP-DB (Rice) LOC_Os12g31350.1 : SSXT protein, putative, expressed
MaizeGDB (Corn) Zm00025a025596 , Zm00025a054236
Brachypodium -
Barley -
Wheat TraesCS5D02G116800 , TraesCS5A02G107700 , TraesCS5B02G114600 , TraesCS5B02G114600
Populus -


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cDNA sequences
Sobic.008G100700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G113300 BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed -
2 Sobic.004G082700 PPR repeat containing protein, expressed -
3 Sobic.002G218600 Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed -
4 Sobic.001G532800 RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
5 Sobic.002G303800 expressed protein -
6 Sobic.001G397000 argininosuccinate lyase, putative, expressed K01755: argH, argininosuccinate lyase
7 Sobic.010G191000 expressed protein -
8 Sobic.007G218100 transmembrane receptor, putative, expressed -
9 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
10 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
11 Sobic.006G120600 AAA-type ATPase family protein, putative, expressed -
12 Sobic.009G214100 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
13 Sobic.010G144900 fiber protein Fb34, putative, expressed -
14 Sobic.002G230800 expressed protein -
15 Sobic.009G109300 POLA4 - Putative DNA polymerase alpha complex subunit, expressed K02684: DNA primase small subunit
16 Sobic.003G412800 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein -
17 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
18 Sobic.001G304800 expressed protein -
19 Sobic.001G261400 STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed -
20 Sobic.002G238500 AGC_PVPK_like_kin82y.16 - ACG kinases include homologs to PKA, PKG and PKC, expressed -


Gene co-expression network
sample Sobic008G100700 Sobic008G100700 Sobic007G113300 Sobic007G113300 Sobic008G100700--Sobic007G113300 Sobic004G082700 Sobic004G082700 Sobic008G100700--Sobic004G082700 Sobic002G218600 Sobic002G218600 Sobic008G100700--Sobic002G218600 Sobic001G532800 Sobic001G532800 Sobic008G100700--Sobic001G532800 Sobic002G303800 Sobic002G303800 Sobic008G100700--Sobic002G303800 Sobic001G397000 Sobic001G397000 Sobic008G100700--Sobic001G397000 Sobic010G191000 Sobic010G191000 Sobic008G100700--Sobic010G191000 Sobic007G218100 Sobic007G218100 Sobic008G100700--Sobic007G218100 Sobic003G179500 Sobic003G179500 Sobic008G100700--Sobic003G179500 Sobic004G233700 Sobic004G233700 Sobic007G113300--Sobic004G233700 Sobic007G113300--Sobic002G218600 Sobic007G113300--Sobic008G100700 Sobic001G304800 Sobic001G304800 Sobic007G113300--Sobic001G304800 Sobic004G286700 Sobic004G286700 Sobic007G113300--Sobic004G286700 Sobic010G067800 Sobic010G067800 Sobic007G113300--Sobic010G067800 Sobic010G103700 Sobic010G103700 Sobic007G113300--Sobic010G103700 Sobic007G113300--Sobic003G179500 Sobic008G090000 Sobic008G090000 Sobic007G113300--Sobic008G090000 Sobic004G082700--Sobic008G100700 Sobic001G167500 Sobic001G167500 Sobic004G082700--Sobic001G167500 Sobic010G134100 Sobic010G134100 Sobic004G082700--Sobic010G134100 Sobic003G144000 Sobic003G144000 Sobic004G082700--Sobic003G144000 Sobic001G371100 Sobic001G371100 Sobic004G082700--Sobic001G371100 Sobic002G268100 Sobic002G268100 Sobic004G082700--Sobic002G268100 Sobic005G098000 Sobic005G098000 Sobic004G082700--Sobic005G098000 Sobic001G008500 Sobic001G008500 Sobic004G082700--Sobic001G008500 Sobic001G493400 Sobic001G493400 Sobic004G082700--Sobic001G493400 Sobic004G263700 Sobic004G263700 Sobic002G218600--Sobic004G263700 Sobic001G261400 Sobic001G261400 Sobic002G218600--Sobic001G261400 Sobic009G146250 Sobic009G146250 Sobic002G218600--Sobic009G146250 Sobic002G218600--Sobic007G113300 Sobic002G230900 Sobic002G230900 Sobic002G218600--Sobic002G230900 Sobic006G120600 Sobic006G120600 Sobic002G218600--Sobic006G120600 Sobic002G218600--Sobic010G103700 Sobic002G218600--Sobic001G304800 Sobic002G218600--Sobic003G179500 Sobic001G532800--Sobic007G218100 Sobic007G112100 Sobic007G112100 Sobic001G532800--Sobic007G112100 Sobic002G236700 Sobic002G236700 Sobic001G532800--Sobic002G236700 Sobic010G250400 Sobic010G250400 Sobic001G532800--Sobic010G250400 Sobic002G230800 Sobic002G230800 Sobic001G532800--Sobic002G230800 Sobic002G158500 Sobic002G158500 Sobic001G532800--Sobic002G158500 Sobic003G147500 Sobic003G147500 Sobic001G532800--Sobic003G147500 Sobic009G109300 Sobic009G109300 Sobic001G532800--Sobic009G109300 Sobic001G532800--Sobic008G100700 Sobic003G444300 Sobic003G444300 Sobic002G303800--Sobic003G444300 Sobic002G303800--Sobic006G120600 Sobic001G169800 Sobic001G169800 Sobic002G303800--Sobic001G169800 Sobic003G183700 Sobic003G183700 Sobic002G303800--Sobic003G183700 Sobic002G303800--Sobic010G103700 Sobic001G146900 Sobic001G146900 Sobic002G303800--Sobic001G146900 Sobic002G303800--Sobic003G179500 Sobic006G051000 Sobic006G051000 Sobic002G303800--Sobic006G051000 Sobic001G083300 Sobic001G083300 Sobic002G303800--Sobic001G083300 Sobic001G397000--Sobic001G371100 Sobic003G300900 Sobic003G300900 Sobic001G397000--Sobic003G300900 Sobic003G396600 Sobic003G396600 Sobic001G397000--Sobic003G396600 Sobic007G134800 Sobic007G134800 Sobic001G397000--Sobic007G134800 Sobic010G144900 Sobic010G144900 Sobic001G397000--Sobic010G144900 Sobic001G397000--Sobic008G100700 Sobic001G081900 Sobic001G081900 Sobic001G397000--Sobic001G081900 Sobic002G101000 Sobic002G101000 Sobic001G397000--Sobic002G101000 Sobic001G228200 Sobic001G228200 Sobic001G397000--Sobic001G228200 Sobic010G191000--Sobic003G179500 Sobic002G246900 Sobic002G246900 Sobic010G191000--Sobic002G246900 Sobic010G105400 Sobic010G105400 Sobic010G191000--Sobic010G105400 Sobic004G047100 Sobic004G047100 Sobic010G191000--Sobic004G047100 Sobic010G051100 Sobic010G051100 Sobic010G191000--Sobic010G051100 Sobic010G191000--Sobic002G230800 Sobic005G144600 Sobic005G144600 Sobic010G191000--Sobic005G144600 Sobic001G255600 Sobic001G255600 Sobic010G191000--Sobic001G255600 Sobic006G102900 Sobic006G102900 Sobic010G191000--Sobic006G102900 Sobic007G218100--Sobic001G532800 Sobic007G218100--Sobic001G304800 Sobic004G052200 Sobic004G052200 Sobic007G218100--Sobic004G052200 Sobic007G218100--Sobic002G230800 Sobic003G246800 Sobic003G246800 Sobic007G218100--Sobic003G246800 Sobic006G275500 Sobic006G275500 Sobic007G218100--Sobic006G275500 Sobic002G392500 Sobic002G392500 Sobic007G218100--Sobic002G392500 Sobic001G104500 Sobic001G104500 Sobic007G218100--Sobic001G104500 Sobic008G159901 Sobic008G159901 Sobic007G218100--Sobic008G159901 Sobic003G179500--Sobic003G183700 Sobic003G179500--Sobic010G103700 Sobic003G179500--Sobic010G105400 Sobic003G179500--Sobic005G144600 Sobic010G147700 Sobic010G147700 Sobic003G179500--Sobic010G147700 Sobic009G087000 Sobic009G087000 Sobic003G179500--Sobic009G087000 Sobic005G110535 Sobic005G110535 Sobic003G179500--Sobic005G110535 Sobic006G116500 Sobic006G116500 Sobic003G179500--Sobic006G116500 Sobic003G179500--Sobic004G047100
Octagon: transcription factors


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