Gene annotation
Transcriptome id Sobic.001G371100.1
Synonym NOP56, Sb01g035290
Functional annotation nucleolar protein 5A, putative, expressed
UniProt C5WZS5
Pfam PF08156 PF01798
Panther DB PTHR10894 PTHR10894:SF0
NCBI CDD -
KEGG Orthology K14564; nucleolar protein 56
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G56110 : homolog of nucleolar protein NOP56
RAP-DB (Rice) LOC_Os03g22880.1 : nucleolar protein 5A, putative, expressed
MaizeGDB (Corn) Zm00025a002477 , Zm00025a052370
Brachypodium KQK14809 , KQK17049 , KQK17048
Barley HORVU2Hr1G022140.5 , HORVU2Hr1G022140.4 , HORVU2Hr1G022140.1 , HORVU2Hr1G022140.3 , HORVU2Hr1G022140.2 , HORVU2Hr1G022110.2 , HORVU2Hr1G022110.1 , HORVU1Hr1G083960.5 , HORVU1Hr1G083960.7 , HORVU1Hr1G083960.6 , HORVU1Hr1G083960.1 , HORVU1Hr1G083960.2 , HORVU2Hr1G022120.2 , HORVU2Hr1G022120.1 , HORVU1Hr1G083960.3
Wheat TraesCS1D02G386500 , TraesCS1A02G379300 , TraesCS1A02G379300 , TraesCS1B02G401000 , TraesCS2D02G128600 , TraesCS2B02G148000 , TraesCS2A02G125500
Populus -


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cDNA sequences
Sobic.001G371100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G032700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase domain containing protein, expressed K11434: type I protein arginine methyltransferase
2 Sobic.001G081900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed K00133: aspartate-semialdehyde dehydrogenase
3 Sobic.001G397000 argininosuccinate lyase, putative, expressed K01755: argH, argininosuccinate lyase
4 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
5 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
6 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
7 Sobic.008G083400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@argininosuccinate synthase, chloroplast precursor, putative, expressed K01940: argG, argininosuccinate synthase
8 Sobic.004G082700 PPR repeat containing protein, expressed -
9 Sobic.001G228200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
10 Sobic.006G135000 RNA binding protein, putative, expressed K11090: LA, lupus La protein
11 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
12 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
13 Sobic.009G211700 ZOS5-12 - C2H2 zinc finger protein, expressed -
14 Sobic.002G280700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
15 Sobic.002G319200 expressed protein K11490: condensin-2 complex subunit H2
16 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
17 Sobic.004G047500 down-regulated TF in developmental senescence(PubMedID : 27586543)@whirly transcription factor domain containing protein, expressed -
18 Sobic.010G144900 fiber protein Fb34, putative, expressed -
19 Sobic.002G133000 delta14-sterol reductase, putative, expressed K00222: TM7SF2, Delta14-sterol reductase
20 Sobic.003G198300 ZOS1-11 - C2H2 zinc finger protein, expressed K15263: cell growth-regulating nucleolar protein


Gene co-expression network
sample Sobic001G371100 Sobic001G371100 Sobic010G032700 Sobic010G032700 Sobic001G371100--Sobic010G032700 Sobic001G081900 Sobic001G081900 Sobic001G371100--Sobic001G081900 Sobic001G397000 Sobic001G397000 Sobic001G371100--Sobic001G397000 Sobic001G530800 Sobic001G530800 Sobic001G371100--Sobic001G530800 Sobic006G251600 Sobic006G251600 Sobic001G371100--Sobic006G251600 Sobic004G047200 Sobic004G047200 Sobic001G371100--Sobic004G047200 Sobic008G083400 Sobic008G083400 Sobic001G371100--Sobic008G083400 Sobic004G082700 Sobic004G082700 Sobic001G371100--Sobic004G082700 Sobic001G228200 Sobic001G228200 Sobic001G371100--Sobic001G228200 Sobic010G032700--Sobic001G371100 Sobic009G119700 Sobic009G119700 Sobic010G032700--Sobic009G119700 Sobic002G280700 Sobic002G280700 Sobic010G032700--Sobic002G280700 Sobic009G088200 Sobic009G088200 Sobic010G032700--Sobic009G088200 Sobic004G343600 Sobic004G343600 Sobic010G032700--Sobic004G343600 Sobic002G054000 Sobic002G054000 Sobic010G032700--Sobic002G054000 Sobic002G319200 Sobic002G319200 Sobic010G032700--Sobic002G319200 Sobic002G045100 Sobic002G045100 Sobic010G032700--Sobic002G045100 Sobic010G032700--Sobic001G228200 Sobic001G081900--Sobic001G371100 Sobic001G081900--Sobic001G397000 Sobic010G125100 Sobic010G125100 Sobic001G081900--Sobic010G125100 Sobic007G079600 Sobic007G079600 Sobic001G081900--Sobic007G079600 Sobic010G144900 Sobic010G144900 Sobic001G081900--Sobic010G144900 Sobic002G101000 Sobic002G101000 Sobic001G081900--Sobic002G101000 Sobic002G304400 Sobic002G304400 Sobic001G081900--Sobic002G304400 Sobic007G171200 Sobic007G171200 Sobic001G081900--Sobic007G171200 Sobic001G081900--Sobic010G032700 Sobic001G397000--Sobic001G371100 Sobic003G300900 Sobic003G300900 Sobic001G397000--Sobic003G300900 Sobic003G396600 Sobic003G396600 Sobic001G397000--Sobic003G396600 Sobic007G134800 Sobic007G134800 Sobic001G397000--Sobic007G134800 Sobic001G397000--Sobic010G144900 Sobic008G100700 Sobic008G100700 Sobic001G397000--Sobic008G100700 Sobic001G397000--Sobic001G081900 Sobic001G397000--Sobic002G101000 Sobic001G397000--Sobic001G228200 Sobic001G530800--Sobic004G047200 Sobic001G214900 Sobic001G214900 Sobic001G530800--Sobic001G214900 Sobic001G026600 Sobic001G026600 Sobic001G530800--Sobic001G026600 Sobic001G530800--Sobic001G371100 Sobic009G234400 Sobic009G234400 Sobic001G530800--Sobic009G234400 Sobic002G423500 Sobic002G423500 Sobic001G530800--Sobic002G423500 Sobic001G530800--Sobic002G054000 Sobic001G196100 Sobic001G196100 Sobic001G530800--Sobic001G196100 Sobic010G277000 Sobic010G277000 Sobic001G530800--Sobic010G277000 Sobic009G071700 Sobic009G071700 Sobic006G251600--Sobic009G071700 Sobic002G365900 Sobic002G365900 Sobic006G251600--Sobic002G365900 Sobic006G225400 Sobic006G225400 Sobic006G251600--Sobic006G225400 Sobic001G008500 Sobic001G008500 Sobic006G251600--Sobic001G008500 Sobic006G251600--Sobic008G083400 Sobic006G198600 Sobic006G198600 Sobic006G251600--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic006G251600--Sobic010G205900 Sobic004G173100 Sobic004G173100 Sobic006G251600--Sobic004G173100 Sobic006G251600--Sobic001G371100 Sobic004G326600 Sobic004G326600 Sobic004G047200--Sobic004G326600 Sobic004G047200--Sobic002G423500 Sobic002G014400 Sobic002G014400 Sobic004G047200--Sobic002G014400 Sobic004G047200--Sobic001G008500 Sobic005G163700 Sobic005G163700 Sobic004G047200--Sobic005G163700 Sobic004G047200--Sobic001G530800 Sobic004G215700 Sobic004G215700 Sobic004G047200--Sobic004G215700 Sobic001G460500 Sobic001G460500 Sobic004G047200--Sobic001G460500 Sobic004G047200--Sobic001G371100 Sobic008G083400--Sobic006G251600 Sobic001G432300 Sobic001G432300 Sobic008G083400--Sobic001G432300 Sobic008G083400--Sobic001G371100 Sobic004G249300 Sobic004G249300 Sobic008G083400--Sobic004G249300 Sobic009G081500 Sobic009G081500 Sobic008G083400--Sobic009G081500 Sobic002G110400 Sobic002G110400 Sobic008G083400--Sobic002G110400 Sobic008G083400--Sobic007G171200 Sobic008G083400--Sobic001G008500 Sobic003G407800 Sobic003G407800 Sobic008G083400--Sobic003G407800 Sobic004G082700--Sobic008G100700 Sobic001G167500 Sobic001G167500 Sobic004G082700--Sobic001G167500 Sobic010G134100 Sobic010G134100 Sobic004G082700--Sobic010G134100 Sobic003G144000 Sobic003G144000 Sobic004G082700--Sobic003G144000 Sobic004G082700--Sobic001G371100 Sobic002G268100 Sobic002G268100 Sobic004G082700--Sobic002G268100 Sobic005G098000 Sobic005G098000 Sobic004G082700--Sobic005G098000 Sobic004G082700--Sobic001G008500 Sobic001G493400 Sobic001G493400 Sobic004G082700--Sobic001G493400 Sobic008G168100 Sobic008G168100 Sobic001G228200--Sobic008G168100 Sobic009G059500 Sobic009G059500 Sobic001G228200--Sobic009G059500 Sobic002G186900 Sobic002G186900 Sobic001G228200--Sobic002G186900 Sobic001G228200--Sobic001G371100 Sobic003G146800 Sobic003G146800 Sobic001G228200--Sobic003G146800 Sobic001G228200--Sobic001G397000 Sobic007G113300 Sobic007G113300 Sobic001G228200--Sobic007G113300 Sobic001G228200--Sobic002G280700 Sobic001G228200--Sobic004G326600
Octagon: transcription factors


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