Gene annotation
Transcriptome id Sobic.001G081900.1
Synonym Sb01g007370
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed
UniProt C5X054
Pfam PF01118 PF02774
Panther DB PTHR10174
NCBI CDD KOG4777; Aspartate-semialdehyde dehydrogenase
KEGG Orthology K00133; aspartate-semialdehyde dehydrogenase
Gene Ontology GO:0016620; oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0008652cellular amino acid biosynthetic process GO:0005737cytoplasm GO:0003942N-acetyl-gamma-glutamyl-phosphate reductase activity


Orthologs (automatic annotation)
TAIR AT1G14810 : semialdehyde dehydrogenase family protein
RAP-DB (Rice) LOC_Os03g55280.1 : semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a016753
Brachypodium KQK13079
Barley HORVU5Hr1G097020.1 , HORVU5Hr1G097020.3 , HORVU5Hr1G097020.2 , HORVU5Hr1G097020.5 , HORVU5Hr1G097020.4
Wheat TraesCS5B02G403400 , TraesCS5B02G403400 , TraesCS5A02G398300 , TraesCS5D02G407800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
2 Sobic.001G397000 argininosuccinate lyase, putative, expressed K01755: argH, argininosuccinate lyase
3 Sobic.010G125100 39S ribosomal protein L46, mitochondrial precursor, putative, expressed K17427: large subunit ribosomal protein L46
4 Sobic.007G079600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FabA-like domain containing protein, expressed K02372: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase
5 Sobic.010G144900 fiber protein Fb34, putative, expressed -
6 Sobic.002G101000 mitochondrial prohibitin complex protein 2, putative, expressed K17081: prohibitin 2
7 Sobic.002G304400 expressed protein -
8 Sobic.007G171200 dihydrodipicolinate reductase, putative, expressed K00215: 4-hydroxy-tetrahydrodipicolinate reductase
9 Sobic.010G032700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase domain containing protein, expressed K11434: type I protein arginine methyltransferase
10 Sobic.008G083400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@argininosuccinate synthase, chloroplast precursor, putative, expressed K01940: argG, argininosuccinate synthase
11 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
12 Sobic.004G082700 PPR repeat containing protein, expressed -
13 Sobic.007G092200 aspartate carbamoyltransferase, putative, expressed K00609: pyrB, aspartate carbamoyltransferase catalytic subunit
14 Sobic.002G280700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
15 Sobic.002G054000 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
16 Sobic.001G413100 nucleotide binding protein, putative, expressed -
17 Sobic.002G256800 acyl-ACP thioesterase, putative, expressed K10782: fatty acyl-ACP thioesterase A
18 Sobic.001G167500 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
19 Sobic.006G104100 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -
20 Sobic.009G088200 -(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1


Gene co-expression network
sample Sobic001G081900 Sobic001G081900 Sobic001G371100 Sobic001G371100 Sobic001G081900--Sobic001G371100 Sobic001G397000 Sobic001G397000 Sobic001G081900--Sobic001G397000 Sobic010G125100 Sobic010G125100 Sobic001G081900--Sobic010G125100 Sobic007G079600 Sobic007G079600 Sobic001G081900--Sobic007G079600 Sobic010G144900 Sobic010G144900 Sobic001G081900--Sobic010G144900 Sobic002G101000 Sobic002G101000 Sobic001G081900--Sobic002G101000 Sobic002G304400 Sobic002G304400 Sobic001G081900--Sobic002G304400 Sobic007G171200 Sobic007G171200 Sobic001G081900--Sobic007G171200 Sobic010G032700 Sobic010G032700 Sobic001G081900--Sobic010G032700 Sobic001G371100--Sobic010G032700 Sobic001G371100--Sobic001G081900 Sobic001G371100--Sobic001G397000 Sobic001G530800 Sobic001G530800 Sobic001G371100--Sobic001G530800 Sobic006G251600 Sobic006G251600 Sobic001G371100--Sobic006G251600 Sobic004G047200 Sobic004G047200 Sobic001G371100--Sobic004G047200 Sobic008G083400 Sobic008G083400 Sobic001G371100--Sobic008G083400 Sobic004G082700 Sobic004G082700 Sobic001G371100--Sobic004G082700 Sobic001G228200 Sobic001G228200 Sobic001G371100--Sobic001G228200 Sobic001G397000--Sobic001G371100 Sobic003G300900 Sobic003G300900 Sobic001G397000--Sobic003G300900 Sobic003G396600 Sobic003G396600 Sobic001G397000--Sobic003G396600 Sobic007G134800 Sobic007G134800 Sobic001G397000--Sobic007G134800 Sobic001G397000--Sobic010G144900 Sobic008G100700 Sobic008G100700 Sobic001G397000--Sobic008G100700 Sobic001G397000--Sobic001G081900 Sobic001G397000--Sobic002G101000 Sobic001G397000--Sobic001G228200 Sobic010G125100--Sobic007G171200 Sobic001G413100 Sobic001G413100 Sobic010G125100--Sobic001G413100 Sobic010G125100--Sobic001G081900 Sobic001G167500 Sobic001G167500 Sobic010G125100--Sobic001G167500 Sobic010G125100--Sobic002G101000 Sobic010G134100 Sobic010G134100 Sobic010G125100--Sobic010G134100 Sobic007G220900 Sobic007G220900 Sobic010G125100--Sobic007G220900 Sobic010G125100--Sobic008G083400 Sobic006G157000 Sobic006G157000 Sobic010G125100--Sobic006G157000 Sobic004G355500 Sobic004G355500 Sobic007G079600--Sobic004G355500 Sobic010G103700 Sobic010G103700 Sobic007G079600--Sobic010G103700 Sobic009G088200 Sobic009G088200 Sobic007G079600--Sobic009G088200 Sobic007G112100 Sobic007G112100 Sobic007G079600--Sobic007G112100 Sobic006G051000 Sobic006G051000 Sobic007G079600--Sobic006G051000 Sobic003G179500 Sobic003G179500 Sobic007G079600--Sobic003G179500 Sobic001G103000 Sobic001G103000 Sobic007G079600--Sobic001G103000 Sobic003G183700 Sobic003G183700 Sobic007G079600--Sobic003G183700 Sobic007G139500 Sobic007G139500 Sobic007G079600--Sobic007G139500 Sobic009G189200 Sobic009G189200 Sobic010G144900--Sobic009G189200 Sobic006G104100 Sobic006G104100 Sobic010G144900--Sobic006G104100 Sobic010G144900--Sobic001G397000 Sobic006G120700 Sobic006G120700 Sobic010G144900--Sobic006G120700 Sobic009G059500 Sobic009G059500 Sobic010G144900--Sobic009G059500 Sobic002G186900 Sobic002G186900 Sobic010G144900--Sobic002G186900 Sobic007G044400 Sobic007G044400 Sobic010G144900--Sobic007G044400 Sobic002G236700 Sobic002G236700 Sobic010G144900--Sobic002G236700 Sobic010G144900--Sobic001G371100 Sobic009G104100 Sobic009G104100 Sobic002G101000--Sobic009G104100 Sobic002G101000--Sobic007G220900 Sobic007G029400 Sobic007G029400 Sobic002G101000--Sobic007G029400 Sobic009G179100 Sobic009G179100 Sobic002G101000--Sobic009G179100 Sobic005G050500 Sobic005G050500 Sobic002G101000--Sobic005G050500 Sobic009G101700 Sobic009G101700 Sobic002G101000--Sobic009G101700 Sobic002G054000 Sobic002G054000 Sobic002G101000--Sobic002G054000 Sobic004G342400 Sobic004G342400 Sobic002G101000--Sobic004G342400 Sobic004G349700 Sobic004G349700 Sobic002G101000--Sobic004G349700 Sobic002G304400--Sobic001G413100 Sobic008G118300 Sobic008G118300 Sobic002G304400--Sobic008G118300 Sobic004G069400 Sobic004G069400 Sobic002G304400--Sobic004G069400 Sobic002G304400--Sobic007G112100 Sobic001G286100 Sobic001G286100 Sobic002G304400--Sobic001G286100 Sobic002G304400--Sobic001G167500 Sobic001G336050 Sobic001G336050 Sobic002G304400--Sobic001G336050 Sobic001G521100 Sobic001G521100 Sobic002G304400--Sobic001G521100 Sobic002G304400--Sobic001G081900 Sobic007G171200--Sobic010G125100 Sobic007G171200--Sobic008G083400 Sobic007G171200--Sobic001G081900 Sobic007G171200--Sobic010G032700 Sobic007G171200--Sobic001G371100 Sobic007G171200--Sobic002G054000 Sobic007G171200--Sobic007G134800 Sobic006G243400 Sobic006G243400 Sobic007G171200--Sobic006G243400 Sobic007G171200--Sobic002G101000 Sobic010G032700--Sobic001G371100 Sobic009G119700 Sobic009G119700 Sobic010G032700--Sobic009G119700 Sobic002G280700 Sobic002G280700 Sobic010G032700--Sobic002G280700 Sobic010G032700--Sobic009G088200 Sobic004G343600 Sobic004G343600 Sobic010G032700--Sobic004G343600 Sobic010G032700--Sobic002G054000 Sobic002G319200 Sobic002G319200 Sobic010G032700--Sobic002G319200 Sobic002G045100 Sobic002G045100 Sobic010G032700--Sobic002G045100 Sobic010G032700--Sobic001G228200
Octagon: transcription factors


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