Gene annotation
Transcriptome id Sobic.010G125100.1
Synonym Sb10g011040, DECOY
Functional annotation 39S ribosomal protein L46, mitochondrial precursor, putative, expressed
UniProt C5Z942
Pfam PF11788
Panther DB PTHR13124
NCBI CDD KOG4548; Mitochondrial ribosomal protein L17
KEGG Orthology K17427; large subunit ribosomal protein L46
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G14620 : decoy
RAP-DB (Rice) LOC_Os06g19640.1 : 39S ribosomal protein L46, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a050551
Brachypodium -
Barley HORVU7Hr1G045140.2 , HORVU7Hr1G045140.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G171200 dihydrodipicolinate reductase, putative, expressed K00215: 4-hydroxy-tetrahydrodipicolinate reductase
2 Sobic.001G413100 nucleotide binding protein, putative, expressed -
3 Sobic.001G081900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed K00133: aspartate-semialdehyde dehydrogenase
4 Sobic.001G167500 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
5 Sobic.002G101000 mitochondrial prohibitin complex protein 2, putative, expressed K17081: prohibitin 2
6 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
7 Sobic.007G220900 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
8 Sobic.008G083400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@argininosuccinate synthase, chloroplast precursor, putative, expressed K01940: argG, argininosuccinate synthase
9 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase
10 Sobic.001G176900 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
11 Sobic.003G160900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
12 Sobic.001G214900 expressed protein -
13 Sobic.006G243400 D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed K00058: serA, D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase
14 Sobic.010G216300 dihydrodipicolinate synthase, chloroplast precursor, putative, expressed K01714: 4-hydroxy-tetrahydrodipicolinate synthase
15 Sobic.008G150300 Lg106, putative, expressed -
16 Sobic.006G017100 ribosomal L18p/L5e family protein, putative, expressed -
17 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
18 Sobic.010G277000 exosome complex exonuclease, putative, expressed K12589: RRP42, exosome complex component RRP42
19 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
20 Sobic.006G104100 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -


Gene co-expression network
sample Sobic010G125100 Sobic010G125100 Sobic007G171200 Sobic007G171200 Sobic010G125100--Sobic007G171200 Sobic001G413100 Sobic001G413100 Sobic010G125100--Sobic001G413100 Sobic001G081900 Sobic001G081900 Sobic010G125100--Sobic001G081900 Sobic001G167500 Sobic001G167500 Sobic010G125100--Sobic001G167500 Sobic002G101000 Sobic002G101000 Sobic010G125100--Sobic002G101000 Sobic010G134100 Sobic010G134100 Sobic010G125100--Sobic010G134100 Sobic007G220900 Sobic007G220900 Sobic010G125100--Sobic007G220900 Sobic008G083400 Sobic008G083400 Sobic010G125100--Sobic008G083400 Sobic006G157000 Sobic006G157000 Sobic010G125100--Sobic006G157000 Sobic007G171200--Sobic010G125100 Sobic007G171200--Sobic008G083400 Sobic007G171200--Sobic001G081900 Sobic010G032700 Sobic010G032700 Sobic007G171200--Sobic010G032700 Sobic001G371100 Sobic001G371100 Sobic007G171200--Sobic001G371100 Sobic002G054000 Sobic002G054000 Sobic007G171200--Sobic002G054000 Sobic007G134800 Sobic007G134800 Sobic007G171200--Sobic007G134800 Sobic006G243400 Sobic006G243400 Sobic007G171200--Sobic006G243400 Sobic007G171200--Sobic002G101000 Sobic001G413100--Sobic010G134100 Sobic001G413100--Sobic001G167500 Sobic009G041800 Sobic009G041800 Sobic001G413100--Sobic009G041800 Sobic008G084100 Sobic008G084100 Sobic001G413100--Sobic008G084100 Sobic004G069400 Sobic004G069400 Sobic001G413100--Sobic004G069400 Sobic001G176900 Sobic001G176900 Sobic001G413100--Sobic001G176900 Sobic002G304400 Sobic002G304400 Sobic001G413100--Sobic002G304400 Sobic003G388900 Sobic003G388900 Sobic001G413100--Sobic003G388900 Sobic003G388700 Sobic003G388700 Sobic001G413100--Sobic003G388700 Sobic001G081900--Sobic001G371100 Sobic001G397000 Sobic001G397000 Sobic001G081900--Sobic001G397000 Sobic001G081900--Sobic010G125100 Sobic007G079600 Sobic007G079600 Sobic001G081900--Sobic007G079600 Sobic010G144900 Sobic010G144900 Sobic001G081900--Sobic010G144900 Sobic001G081900--Sobic002G101000 Sobic001G081900--Sobic002G304400 Sobic001G081900--Sobic007G171200 Sobic001G081900--Sobic010G032700 Sobic001G167500--Sobic010G134100 Sobic001G167500--Sobic001G413100 Sobic001G167500--Sobic009G041800 Sobic002G367800 Sobic002G367800 Sobic001G167500--Sobic002G367800 Sobic001G167500--Sobic001G176900 Sobic003G130000 Sobic003G130000 Sobic001G167500--Sobic003G130000 Sobic004G082700 Sobic004G082700 Sobic001G167500--Sobic004G082700 Sobic010G197200 Sobic010G197200 Sobic001G167500--Sobic010G197200 Sobic001G214900 Sobic001G214900 Sobic001G167500--Sobic001G214900 Sobic009G104100 Sobic009G104100 Sobic002G101000--Sobic009G104100 Sobic002G101000--Sobic007G220900 Sobic007G029400 Sobic007G029400 Sobic002G101000--Sobic007G029400 Sobic009G179100 Sobic009G179100 Sobic002G101000--Sobic009G179100 Sobic005G050500 Sobic005G050500 Sobic002G101000--Sobic005G050500 Sobic009G101700 Sobic009G101700 Sobic002G101000--Sobic009G101700 Sobic002G101000--Sobic002G054000 Sobic004G342400 Sobic004G342400 Sobic002G101000--Sobic004G342400 Sobic004G349700 Sobic004G349700 Sobic002G101000--Sobic004G349700 Sobic010G134100--Sobic001G167500 Sobic010G134100--Sobic001G413100 Sobic010G134100--Sobic001G176900 Sobic010G134100--Sobic001G214900 Sobic001G493400 Sobic001G493400 Sobic010G134100--Sobic001G493400 Sobic004G356300 Sobic004G356300 Sobic010G134100--Sobic004G356300 Sobic010G134100--Sobic002G367800 Sobic010G134100--Sobic009G041800 Sobic010G134100--Sobic004G082700 Sobic001G481700 Sobic001G481700 Sobic007G220900--Sobic001G481700 Sobic007G220900--Sobic002G101000 Sobic010G100000 Sobic010G100000 Sobic007G220900--Sobic010G100000 Sobic001G513500 Sobic001G513500 Sobic007G220900--Sobic001G513500 Sobic007G220900--Sobic009G104100 Sobic007G220900--Sobic009G179100 Sobic008G094600 Sobic008G094600 Sobic007G220900--Sobic008G094600 Sobic001G025600 Sobic001G025600 Sobic007G220900--Sobic001G025600 Sobic001G030300 Sobic001G030300 Sobic007G220900--Sobic001G030300 Sobic006G251600 Sobic006G251600 Sobic008G083400--Sobic006G251600 Sobic001G432300 Sobic001G432300 Sobic008G083400--Sobic001G432300 Sobic008G083400--Sobic001G371100 Sobic004G249300 Sobic004G249300 Sobic008G083400--Sobic004G249300 Sobic009G081500 Sobic009G081500 Sobic008G083400--Sobic009G081500 Sobic002G110400 Sobic002G110400 Sobic008G083400--Sobic002G110400 Sobic008G083400--Sobic007G171200 Sobic001G008500 Sobic001G008500 Sobic008G083400--Sobic001G008500 Sobic003G407800 Sobic003G407800 Sobic008G083400--Sobic003G407800 Sobic003G309300 Sobic003G309300 Sobic006G157000--Sobic003G309300 Sobic009G071700 Sobic009G071700 Sobic006G157000--Sobic009G071700 Sobic009G072000 Sobic009G072000 Sobic006G157000--Sobic009G072000 Sobic010G216300 Sobic010G216300 Sobic006G157000--Sobic010G216300 Sobic001G468600 Sobic001G468600 Sobic006G157000--Sobic001G468600 Sobic008G017200 Sobic008G017200 Sobic006G157000--Sobic008G017200 Sobic006G010400 Sobic006G010400 Sobic006G157000--Sobic006G010400 Sobic004G124100 Sobic004G124100 Sobic006G157000--Sobic004G124100 Sobic007G114000 Sobic007G114000 Sobic006G157000--Sobic007G114000
Octagon: transcription factors


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