Gene annotation
Transcriptome id Sobic.006G157000.1,Sobic.006G157000.2
Synonym Sb06g023390
Functional annotation adenylosuccinate lyase, putative, expressed
UniProt C5YCK7 , A0A1Z5RE38
Pfam PF00206 PF08328 PF01357 PF03330 PF00206 PF08328
Panther DB PTHR11444 PTHR11444:SF17
NCBI CDD KOG2700; Adenylosuccinate lyase
KEGG Orthology K01756; purB, adenylosuccinate lyase
Gene Ontology GO:0006188; IMP biosynthetic process GO:0004018N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity


Orthologs (automatic annotation)
TAIR AT1G36280 : L-Aspartase-like family protein
RAP-DB (Rice) LOC_Os03g19930.1 : adenylosuccinate lyase, putative, expressed
MaizeGDB (Corn) Zm00025a002204 , Zm00025a020996 , Zm00025a052533 , Zm00025a010463
Brachypodium PNT61534 , KQJ83731 , KQK21957
Barley HORVU6Hr1G060410.21 , HORVU4Hr1G052810.3 , HORVU4Hr1G052810.1 , HORVU4Hr1G052810.2 , HORVU4Hr1G052810.5 , HORVU6Hr1G060410.7 , HORVU6Hr1G060410.1 , HORVU6Hr1G060410.2 , HORVU6Hr1G060410.8 , HORVU6Hr1G060410.10 , HORVU6Hr1G060410.11 , HORVU6Hr1G060410.12 , HORVU6Hr1G060410.18
Wheat TraesCS6A02G235800 , TraesCS2B02G390000 , TraesCS2B02G390000 , TraesCS2D02G369200 , TraesCS2D02G369200 , TraesCS6D02G218500 , TraesCS2A02G373000 , TraesCS2A02G373000 , TraesCS4B02G180400 , TraesCS4B02G180400 , TraesCS4A02G124000 , TraesCS6B02G264400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G309300 radical SAM enzyme, putative, expressed K03644: lipA, LIAS, LIP1, lipoyl synthase
2 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
3 Sobic.009G072000 phosphoribosylformylglycinamidine synthase, putative, expressed K01933: phosphoribosylformylglycinamidine cyclo-ligase
4 Sobic.010G216300 dihydrodipicolinate synthase, chloroplast precursor, putative, expressed K01714: 4-hydroxy-tetrahydrodipicolinate synthase
5 Sobic.001G468600 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
6 Sobic.008G017200 WD domain, G-beta repeat domain containing protein, expressed K14320: aladin
7 Sobic.006G010400 tRNA-dihydrouridine synthase 3-like, putative, expressed K05544: tRNA-dihydrouridine synthase 3
8 Sobic.004G124100 EMB1303, putative, expressed -
9 Sobic.007G114000 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2
10 Sobic.008G103900 glycine-rich RNA-binding protein 7, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
11 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
12 Sobic.009G151800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
13 Sobic.003G388900 PPR repeat domain containing protein, putative, expressed -
14 Sobic.004G275600 hydrolase, putative, expressed K01438: acetylornithine deacetylase
15 Sobic.001G251600 SET domain protein 123, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
16 Sobic.006G243400 D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed K00058: serA, D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase
17 Sobic.005G105500 expressed protein -
18 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
19 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
20 Sobic.002G365900 WD repeat-containing protein 12, putative, expressed K14863: WDR12, ribosome biogenesis protein


Gene co-expression network
sample Sobic006G157000 Sobic006G157000 Sobic003G309300 Sobic003G309300 Sobic006G157000--Sobic003G309300 Sobic009G071700 Sobic009G071700 Sobic006G157000--Sobic009G071700 Sobic009G072000 Sobic009G072000 Sobic006G157000--Sobic009G072000 Sobic010G216300 Sobic010G216300 Sobic006G157000--Sobic010G216300 Sobic001G468600 Sobic001G468600 Sobic006G157000--Sobic001G468600 Sobic008G017200 Sobic008G017200 Sobic006G157000--Sobic008G017200 Sobic006G010400 Sobic006G010400 Sobic006G157000--Sobic006G010400 Sobic004G124100 Sobic004G124100 Sobic006G157000--Sobic004G124100 Sobic007G114000 Sobic007G114000 Sobic006G157000--Sobic007G114000 Sobic004G275600 Sobic004G275600 Sobic003G309300--Sobic004G275600 Sobic003G309300--Sobic006G157000 Sobic003G165101 Sobic003G165101 Sobic003G309300--Sobic003G165101 Sobic007G071900 Sobic007G071900 Sobic003G309300--Sobic007G071900 Sobic008G038600 Sobic008G038600 Sobic003G309300--Sobic008G038600 Sobic006G237000 Sobic006G237000 Sobic003G309300--Sobic006G237000 Sobic009G124000 Sobic009G124000 Sobic003G309300--Sobic009G124000 Sobic001G537500 Sobic001G537500 Sobic003G309300--Sobic001G537500 Sobic003G309300--Sobic010G216300 Sobic006G251600 Sobic006G251600 Sobic009G071700--Sobic006G251600 Sobic001G457200 Sobic001G457200 Sobic009G071700--Sobic001G457200 Sobic006G198600 Sobic006G198600 Sobic009G071700--Sobic006G198600 Sobic004G173100 Sobic004G173100 Sobic009G071700--Sobic004G173100 Sobic007G137350 Sobic007G137350 Sobic009G071700--Sobic007G137350 Sobic006G225400 Sobic006G225400 Sobic009G071700--Sobic006G225400 Sobic005G100900 Sobic005G100900 Sobic009G071700--Sobic005G100900 Sobic003G425100 Sobic003G425100 Sobic009G071700--Sobic003G425100 Sobic007G092200 Sobic007G092200 Sobic009G071700--Sobic007G092200 Sobic009G072000--Sobic006G157000 Sobic009G072000--Sobic001G468600 Sobic003G216500 Sobic003G216500 Sobic009G072000--Sobic003G216500 Sobic001G486700 Sobic001G486700 Sobic009G072000--Sobic001G486700 Sobic006G002201 Sobic006G002201 Sobic009G072000--Sobic006G002201 Sobic009G072000--Sobic004G275600 Sobic005G105500 Sobic005G105500 Sobic009G072000--Sobic005G105500 Sobic009G072000--Sobic003G309300 Sobic006G213400 Sobic006G213400 Sobic009G072000--Sobic006G213400 Sobic010G216300--Sobic006G157000 Sobic003G407600 Sobic003G407600 Sobic010G216300--Sobic003G407600 Sobic010G216300--Sobic006G010400 Sobic001G007800 Sobic001G007800 Sobic010G216300--Sobic001G007800 Sobic006G084000 Sobic006G084000 Sobic010G216300--Sobic006G084000 Sobic008G160000 Sobic008G160000 Sobic010G216300--Sobic008G160000 Sobic010G216300--Sobic003G309300 Sobic010G216300--Sobic009G071700 Sobic007G143500 Sobic007G143500 Sobic010G216300--Sobic007G143500 Sobic001G434200 Sobic001G434200 Sobic001G468600--Sobic001G434200 Sobic001G468600--Sobic006G002201 Sobic004G216400 Sobic004G216400 Sobic001G468600--Sobic004G216400 Sobic002G332900 Sobic002G332900 Sobic001G468600--Sobic002G332900 Sobic001G468600--Sobic004G124100 Sobic010G262433 Sobic010G262433 Sobic001G468600--Sobic010G262433 Sobic001G468600--Sobic009G072000 Sobic009G249800 Sobic009G249800 Sobic001G468600--Sobic009G249800 Sobic001G468600--Sobic006G157000 Sobic008G017200--Sobic006G157000 Sobic001G008500 Sobic001G008500 Sobic008G017200--Sobic001G008500 Sobic008G017200--Sobic009G071700 Sobic010G188000 Sobic010G188000 Sobic008G017200--Sobic010G188000 Sobic006G010000 Sobic006G010000 Sobic008G017200--Sobic006G010000 Sobic004G047200 Sobic004G047200 Sobic008G017200--Sobic004G047200 Sobic009G045900 Sobic009G045900 Sobic008G017200--Sobic009G045900 Sobic002G365900 Sobic002G365900 Sobic008G017200--Sobic002G365900 Sobic008G017200--Sobic006G251600 Sobic001G251600 Sobic001G251600 Sobic006G010400--Sobic001G251600 Sobic006G010400--Sobic006G084000 Sobic006G010400--Sobic007G071900 Sobic006G010400--Sobic001G537500 Sobic006G010400--Sobic009G249800 Sobic007G140400 Sobic007G140400 Sobic006G010400--Sobic007G140400 Sobic008G051200 Sobic008G051200 Sobic006G010400--Sobic008G051200 Sobic004G257100 Sobic004G257100 Sobic006G010400--Sobic004G257100 Sobic001G460500 Sobic001G460500 Sobic006G010400--Sobic001G460500 Sobic004G291400 Sobic004G291400 Sobic004G124100--Sobic004G291400 Sobic004G124100--Sobic001G468600 Sobic004G124100--Sobic006G002201 Sobic004G248900 Sobic004G248900 Sobic004G124100--Sobic004G248900 Sobic004G124100--Sobic006G010400 Sobic004G124100--Sobic006G157000 Sobic008G118600 Sobic008G118600 Sobic004G124100--Sobic008G118600 Sobic004G124100--Sobic005G105500 Sobic008G103800 Sobic008G103800 Sobic004G124100--Sobic008G103800 Sobic007G114000--Sobic005G100900 Sobic006G035500 Sobic006G035500 Sobic007G114000--Sobic006G035500 Sobic007G114000--Sobic010G188000 Sobic002G152900 Sobic002G152900 Sobic007G114000--Sobic002G152900 Sobic007G114000--Sobic009G071700 Sobic010G161525 Sobic010G161525 Sobic007G114000--Sobic010G161525 Sobic007G114000--Sobic006G157000 Sobic002G412700 Sobic002G412700 Sobic007G114000--Sobic002G412700 Sobic001G368100 Sobic001G368100 Sobic007G114000--Sobic001G368100
Octagon: transcription factors


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