Gene annotation
Transcriptome id Sobic.005G100900.1
Synonym Sb05g008690
Functional annotation DAG protein, chloroplast precursor, putative, expressed
UniProt C5Y1R1
Pfam -
Panther DB PTHR31346 PTHR31346:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G20020 : -
RAP-DB (Rice) LOC_Os11g11020.1 : DAG protein, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a029667
Brachypodium KQJ88933
Barley HORVU4Hr1G016440.1 , HORVU4Hr1G016440.3 , HORVU4Hr1G016440.2 , HORVU4Hr1G016440.5 , HORVU4Hr1G016440.4 , HORVU4Hr1G016440.7 , HORVU4Hr1G016440.6 , HORVU4Hr1G016440.8
Wheat TraesCS4B02G107700 , TraesCS4B02G107700 , TraesCS4A02G203900 , TraesCS4D02G104800 , TraesCS4D02G104800
Populus -


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cDNA sequences
Sobic.005G100900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
2 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
3 Sobic.007G114000 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2
4 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
5 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
6 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
7 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
8 Sobic.001G485600 DAG protein, chloroplast precursor, putative, expressed -
9 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -
10 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
11 Sobic.007G137350 - K14549: U3 small nucleolar RNA-associated protein 15
12 Sobic.001G362300 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12900: FUS-interacting serine-arginine-rich protein 1
13 Sobic.003G134000 PPR repeat domain containing protein, putative, expressed -
14 Sobic.002G399200 - K14779: DDX52, ATP-dependent RNA helicase DDX52/ROK1
15 Sobic.001G280400 ankyrin repeat domain-containing protein 28, putative, expressed -
16 Sobic.001G502600 tetratricopeptide repeat containing protein, putative, expressed -
17 Sobic.001G457200 mitochondrial carrier protein, putative, expressed -
18 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase
19 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
20 Sobic.003G332900 expressed protein K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4


Gene co-expression network
sample Sobic005G100900 Sobic005G100900 Sobic002G238000 Sobic002G238000 Sobic005G100900--Sobic002G238000 Sobic009G071700 Sobic009G071700 Sobic005G100900--Sobic009G071700 Sobic007G114000 Sobic007G114000 Sobic005G100900--Sobic007G114000 Sobic003G425100 Sobic003G425100 Sobic005G100900--Sobic003G425100 Sobic001G119600 Sobic001G119600 Sobic005G100900--Sobic001G119600 Sobic002G262100 Sobic002G262100 Sobic005G100900--Sobic002G262100 Sobic004G173100 Sobic004G173100 Sobic005G100900--Sobic004G173100 Sobic001G485600 Sobic001G485600 Sobic005G100900--Sobic001G485600 Sobic008G165900 Sobic008G165900 Sobic005G100900--Sobic008G165900 Sobic002G238000--Sobic005G100900 Sobic002G238000--Sobic008G165900 Sobic002G238000--Sobic009G071700 Sobic006G125900 Sobic006G125900 Sobic002G238000--Sobic006G125900 Sobic002G238000--Sobic002G262100 Sobic010G228700 Sobic010G228700 Sobic002G238000--Sobic010G228700 Sobic001G224200 Sobic001G224200 Sobic002G238000--Sobic001G224200 Sobic002G092050 Sobic002G092050 Sobic002G238000--Sobic002G092050 Sobic004G268100 Sobic004G268100 Sobic002G238000--Sobic004G268100 Sobic006G251600 Sobic006G251600 Sobic009G071700--Sobic006G251600 Sobic001G457200 Sobic001G457200 Sobic009G071700--Sobic001G457200 Sobic006G198600 Sobic006G198600 Sobic009G071700--Sobic006G198600 Sobic009G071700--Sobic004G173100 Sobic007G137350 Sobic007G137350 Sobic009G071700--Sobic007G137350 Sobic006G225400 Sobic006G225400 Sobic009G071700--Sobic006G225400 Sobic009G071700--Sobic005G100900 Sobic009G071700--Sobic003G425100 Sobic007G092200 Sobic007G092200 Sobic009G071700--Sobic007G092200 Sobic007G114000--Sobic005G100900 Sobic006G035500 Sobic006G035500 Sobic007G114000--Sobic006G035500 Sobic010G188000 Sobic010G188000 Sobic007G114000--Sobic010G188000 Sobic002G152900 Sobic002G152900 Sobic007G114000--Sobic002G152900 Sobic007G114000--Sobic009G071700 Sobic010G161525 Sobic010G161525 Sobic007G114000--Sobic010G161525 Sobic006G157000 Sobic006G157000 Sobic007G114000--Sobic006G157000 Sobic002G412700 Sobic002G412700 Sobic007G114000--Sobic002G412700 Sobic001G368100 Sobic001G368100 Sobic007G114000--Sobic001G368100 Sobic009G163600 Sobic009G163600 Sobic003G425100--Sobic009G163600 Sobic005G028100 Sobic005G028100 Sobic003G425100--Sobic005G028100 Sobic004G027300 Sobic004G027300 Sobic003G425100--Sobic004G027300 Sobic003G425100--Sobic006G225400 Sobic010G224700 Sobic010G224700 Sobic003G425100--Sobic010G224700 Sobic003G425100--Sobic009G071700 Sobic003G436600 Sobic003G436600 Sobic003G425100--Sobic003G436600 Sobic003G425100--Sobic006G198600 Sobic004G036700 Sobic004G036700 Sobic003G425100--Sobic004G036700 Sobic001G119600--Sobic002G262100 Sobic001G119600--Sobic010G224700 Sobic003G123200 Sobic003G123200 Sobic001G119600--Sobic003G123200 Sobic001G119600--Sobic003G425100 Sobic002G378100 Sobic002G378100 Sobic001G119600--Sobic002G378100 Sobic008G163500 Sobic008G163500 Sobic001G119600--Sobic008G163500 Sobic008G049100 Sobic008G049100 Sobic001G119600--Sobic008G049100 Sobic001G119600--Sobic006G198600 Sobic006G231800 Sobic006G231800 Sobic001G119600--Sobic006G231800 Sobic002G262100--Sobic001G119600 Sobic002G399200 Sobic002G399200 Sobic002G262100--Sobic002G399200 Sobic002G262100--Sobic002G378100 Sobic002G262100--Sobic008G163500 Sobic001G422500 Sobic001G422500 Sobic002G262100--Sobic001G422500 Sobic001G157300 Sobic001G157300 Sobic002G262100--Sobic001G157300 Sobic002G262100--Sobic004G173100 Sobic002G262100--Sobic003G425100 Sobic002G262100--Sobic006G198600 Sobic004G173100--Sobic009G071700 Sobic004G173100--Sobic006G251600 Sobic004G173100--Sobic003G425100 Sobic004G173100--Sobic002G262100 Sobic004G173100--Sobic006G198600 Sobic004G173100--Sobic002G399200 Sobic003G407600 Sobic003G407600 Sobic004G173100--Sobic003G407600 Sobic004G173100--Sobic005G100900 Sobic004G173100--Sobic008G163500 Sobic008G056900 Sobic008G056900 Sobic001G485600--Sobic008G056900 Sobic009G096100 Sobic009G096100 Sobic001G485600--Sobic009G096100 Sobic003G324100 Sobic003G324100 Sobic001G485600--Sobic003G324100 Sobic003G245900 Sobic003G245900 Sobic001G485600--Sobic003G245900 Sobic001G362300 Sobic001G362300 Sobic001G485600--Sobic001G362300 Sobic008G081600 Sobic008G081600 Sobic001G485600--Sobic008G081600 Sobic001G485600--Sobic005G100900 Sobic003G174800 Sobic003G174800 Sobic001G485600--Sobic003G174800 Sobic007G197400 Sobic007G197400 Sobic001G485600--Sobic007G197400 Sobic008G165900--Sobic001G224200 Sobic003G332900 Sobic003G332900 Sobic008G165900--Sobic003G332900 Sobic008G165900--Sobic002G238000 Sobic006G128400 Sobic006G128400 Sobic008G165900--Sobic006G128400 Sobic007G075800 Sobic007G075800 Sobic008G165900--Sobic007G075800 Sobic001G207200 Sobic001G207200 Sobic008G165900--Sobic001G207200 Sobic010G100800 Sobic010G100800 Sobic008G165900--Sobic010G100800 Sobic001G501300 Sobic001G501300 Sobic008G165900--Sobic001G501300 Sobic002G031700 Sobic002G031700 Sobic008G165900--Sobic002G031700
Octagon: transcription factors


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