Gene annotation
Transcriptome id Sobic.007G137350.1
Synonym -
Functional annotation -
UniProt A0A1Z5RAN6
Pfam PF00400 PF09384
Panther DB PTHR19924 PTHR19924:SF26
NCBI CDD KOG0310; Conserved WD40 repeat-containing protein
KEGG Orthology K14549; U3 small nucleolar RNA-associated protein 15
Gene Ontology GO:0005515; protein binding GO:0006364rRNA processing GO:0005730nucleolus


Orthologs (automatic annotation)
TAIR AT2G47990 : transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os07g12320.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a045425
Brachypodium KQK20321
Barley HORVU7Hr1G117550.5 , HORVU7Hr1G117550.1 , HORVU7Hr1G117550.2 , HORVU7Hr1G117550.3
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
2 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
3 Sobic.007G092200 aspartate carbamoyltransferase, putative, expressed K00609: pyrB, aspartate carbamoyltransferase catalytic subunit
4 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
5 Sobic.009G228500 60S ribosomal protein-related, putative, expressed K14775: UTP30, ribosome biogenesis protein UTP30
6 Sobic.004G082700 PPR repeat containing protein, expressed -
7 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
8 Sobic.001G157300 expressed protein K14793: ribosomal RNA-processing protein 9
9 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
10 Sobic.003G211100 hyaluronan/mRNA binding family domain containing protein, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
11 Sobic.010G018000 39S ribosomal protein L47, mitochondrial precursor, putative, expressed K17428: MRPL47, large subunit ribosomal protein L47
12 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase
13 Sobic.002G145300 ZOS7-13 - C2H2 zinc finger protein, expressed K11436: type I protein arginine methyltransferase
14 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
15 Sobic.001G457200 mitochondrial carrier protein, putative, expressed -
16 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
17 Sobic.007G114000 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2
18 Sobic.006G135000 RNA binding protein, putative, expressed K11090: LA, lupus La protein
19 Sobic.002G152900 OsTOP6B - Topoisomerase 6 subunit B, expressed -
20 Sobic.002G056400 - K10884: XRCC6, KU70, ATP-dependent DNA helicase 2 subunit 1


Gene co-expression network
sample Sobic007G137350 Sobic007G137350 Sobic009G071700 Sobic009G071700 Sobic007G137350--Sobic009G071700 Sobic004G173100 Sobic004G173100 Sobic007G137350--Sobic004G173100 Sobic007G092200 Sobic007G092200 Sobic007G137350--Sobic007G092200 Sobic005G100900 Sobic005G100900 Sobic007G137350--Sobic005G100900 Sobic009G228500 Sobic009G228500 Sobic007G137350--Sobic009G228500 Sobic004G082700 Sobic004G082700 Sobic007G137350--Sobic004G082700 Sobic006G251600 Sobic006G251600 Sobic007G137350--Sobic006G251600 Sobic001G157300 Sobic001G157300 Sobic007G137350--Sobic001G157300 Sobic006G198600 Sobic006G198600 Sobic007G137350--Sobic006G198600 Sobic009G071700--Sobic006G251600 Sobic001G457200 Sobic001G457200 Sobic009G071700--Sobic001G457200 Sobic009G071700--Sobic006G198600 Sobic009G071700--Sobic004G173100 Sobic009G071700--Sobic007G137350 Sobic006G225400 Sobic006G225400 Sobic009G071700--Sobic006G225400 Sobic009G071700--Sobic005G100900 Sobic003G425100 Sobic003G425100 Sobic009G071700--Sobic003G425100 Sobic009G071700--Sobic007G092200 Sobic004G173100--Sobic009G071700 Sobic004G173100--Sobic006G251600 Sobic004G173100--Sobic003G425100 Sobic002G262100 Sobic002G262100 Sobic004G173100--Sobic002G262100 Sobic004G173100--Sobic006G198600 Sobic002G399200 Sobic002G399200 Sobic004G173100--Sobic002G399200 Sobic003G407600 Sobic003G407600 Sobic004G173100--Sobic003G407600 Sobic004G173100--Sobic005G100900 Sobic008G163500 Sobic008G163500 Sobic004G173100--Sobic008G163500 Sobic007G092200--Sobic009G071700 Sobic009G191500 Sobic009G191500 Sobic007G092200--Sobic009G191500 Sobic007G092200--Sobic006G225400 Sobic003G336500 Sobic003G336500 Sobic007G092200--Sobic003G336500 Sobic007G092200--Sobic007G137350 Sobic007G092200--Sobic001G457200 Sobic005G088900 Sobic005G088900 Sobic007G092200--Sobic005G088900 Sobic005G079201 Sobic005G079201 Sobic007G092200--Sobic005G079201 Sobic001G372800 Sobic001G372800 Sobic007G092200--Sobic001G372800 Sobic002G238000 Sobic002G238000 Sobic005G100900--Sobic002G238000 Sobic005G100900--Sobic009G071700 Sobic007G114000 Sobic007G114000 Sobic005G100900--Sobic007G114000 Sobic005G100900--Sobic003G425100 Sobic001G119600 Sobic001G119600 Sobic005G100900--Sobic001G119600 Sobic005G100900--Sobic002G262100 Sobic005G100900--Sobic004G173100 Sobic001G485600 Sobic001G485600 Sobic005G100900--Sobic001G485600 Sobic008G165900 Sobic008G165900 Sobic005G100900--Sobic008G165900 Sobic009G228500--Sobic007G137350 Sobic006G095400 Sobic006G095400 Sobic009G228500--Sobic006G095400 Sobic006G135000 Sobic006G135000 Sobic009G228500--Sobic006G135000 Sobic007G108100 Sobic007G108100 Sobic009G228500--Sobic007G108100 Sobic001G493400 Sobic001G493400 Sobic009G228500--Sobic001G493400 Sobic009G228500--Sobic004G173100 Sobic004G190600 Sobic004G190600 Sobic009G228500--Sobic004G190600 Sobic010G038800 Sobic010G038800 Sobic009G228500--Sobic010G038800 Sobic004G002500 Sobic004G002500 Sobic009G228500--Sobic004G002500 Sobic008G100700 Sobic008G100700 Sobic004G082700--Sobic008G100700 Sobic001G167500 Sobic001G167500 Sobic004G082700--Sobic001G167500 Sobic010G134100 Sobic010G134100 Sobic004G082700--Sobic010G134100 Sobic003G144000 Sobic003G144000 Sobic004G082700--Sobic003G144000 Sobic001G371100 Sobic001G371100 Sobic004G082700--Sobic001G371100 Sobic002G268100 Sobic002G268100 Sobic004G082700--Sobic002G268100 Sobic005G098000 Sobic005G098000 Sobic004G082700--Sobic005G098000 Sobic001G008500 Sobic001G008500 Sobic004G082700--Sobic001G008500 Sobic004G082700--Sobic001G493400 Sobic006G251600--Sobic009G071700 Sobic002G365900 Sobic002G365900 Sobic006G251600--Sobic002G365900 Sobic006G251600--Sobic006G225400 Sobic006G251600--Sobic001G008500 Sobic008G083400 Sobic008G083400 Sobic006G251600--Sobic008G083400 Sobic006G251600--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic006G251600--Sobic010G205900 Sobic006G251600--Sobic004G173100 Sobic006G251600--Sobic001G371100 Sobic001G157300--Sobic009G071700 Sobic001G157300--Sobic002G262100 Sobic001G157300--Sobic006G198600 Sobic001G157300--Sobic001G119600 Sobic001G157300--Sobic006G251600 Sobic003G123200 Sobic003G123200 Sobic001G157300--Sobic003G123200 Sobic001G157300--Sobic007G137350 Sobic001G157300--Sobic003G425100 Sobic008G049100 Sobic008G049100 Sobic001G157300--Sobic008G049100 Sobic006G198600--Sobic003G123200 Sobic006G198600--Sobic009G071700 Sobic001G401400 Sobic001G401400 Sobic006G198600--Sobic001G401400 Sobic006G198600--Sobic008G163500 Sobic006G198600--Sobic006G251600 Sobic006G198600--Sobic008G049100 Sobic006G198600--Sobic003G425100 Sobic004G036700 Sobic004G036700 Sobic006G198600--Sobic004G036700 Sobic006G198600--Sobic001G157300
Octagon: transcription factors


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