Gene annotation
Transcriptome id Sobic.009G228500.2,Sobic.009G228500.1
Synonym
Functional annotation 60S ribosomal protein-related, putative, expressed
UniProt A0A1B6P9Y0 , A0A1B6PA07
Pfam PF00687
Panther DB PTHR23105 PTHR23105:SF31
NCBI CDD KOG1685; Uncharacterized conserved protein
KEGG Orthology K14775; UTP30, ribosome biogenesis protein UTP30
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G58660 : Ribosomal protein L1p/L10e family
RAP-DB (Rice) LOC_Os05g48422.1 : 60S ribosomal protein-related, putative, expressed
MaizeGDB (Corn) Zm00025a036570 , Zm00025a044526
Brachypodium KQK04942
Barley HORVU1Hr1G085730.6 , HORVU1Hr1G085730.7 , HORVU1Hr1G085730.2 , HORVU1Hr1G085730.1 , HORVU1Hr1G085730.8
Wheat -
Populus -


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cDNA sequences
Sobic.009G228500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G137350 - K14549: U3 small nucleolar RNA-associated protein 15
2 Sobic.006G095400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K14826: FK506-binding nuclear protein
3 Sobic.006G135000 RNA binding protein, putative, expressed K11090: LA, lupus La protein
4 Sobic.007G108100 co-chaperone protein SBA1, putative, expressed -
5 Sobic.001G493400 nucleic acid binding protein, putative, expressed -
6 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
7 Sobic.004G190600 SET, putative, expressed K11290: SET, TAF1, template-activating factor I
8 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
9 Sobic.004G002500 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5
10 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
11 Sobic.003G211100 hyaluronan/mRNA binding family domain containing protein, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
12 Sobic.004G252000 expressed protein K14545: ribosomal RNA-processing protein 7
13 Sobic.010G018000 39S ribosomal protein L47, mitochondrial precursor, putative, expressed K17428: MRPL47, large subunit ribosomal protein L47
14 Sobic.009G150900 FabA-like domain containing protein, expressed K02372: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase
15 Sobic.008G169200 SRP40, C-terminal domain containing protein, expressed -
16 Sobic.004G272400 AAA-type ATPase family protein, putative, expressed K17681: ATPase family AAA domain-containing protein 3A/B
17 Sobic.003G198300 ZOS1-11 - C2H2 zinc finger protein, expressed K15263: cell growth-regulating nucleolar protein
18 Sobic.009G211700 ZOS5-12 - C2H2 zinc finger protein, expressed -
19 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
20 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta


Gene co-expression network
sample Sobic009G228500 Sobic009G228500 Sobic007G137350 Sobic007G137350 Sobic009G228500--Sobic007G137350 Sobic006G095400 Sobic006G095400 Sobic009G228500--Sobic006G095400 Sobic006G135000 Sobic006G135000 Sobic009G228500--Sobic006G135000 Sobic007G108100 Sobic007G108100 Sobic009G228500--Sobic007G108100 Sobic001G493400 Sobic001G493400 Sobic009G228500--Sobic001G493400 Sobic004G173100 Sobic004G173100 Sobic009G228500--Sobic004G173100 Sobic004G190600 Sobic004G190600 Sobic009G228500--Sobic004G190600 Sobic010G038800 Sobic010G038800 Sobic009G228500--Sobic010G038800 Sobic004G002500 Sobic004G002500 Sobic009G228500--Sobic004G002500 Sobic009G071700 Sobic009G071700 Sobic007G137350--Sobic009G071700 Sobic007G137350--Sobic004G173100 Sobic007G092200 Sobic007G092200 Sobic007G137350--Sobic007G092200 Sobic005G100900 Sobic005G100900 Sobic007G137350--Sobic005G100900 Sobic007G137350--Sobic009G228500 Sobic004G082700 Sobic004G082700 Sobic007G137350--Sobic004G082700 Sobic006G251600 Sobic006G251600 Sobic007G137350--Sobic006G251600 Sobic001G157300 Sobic001G157300 Sobic007G137350--Sobic001G157300 Sobic006G198600 Sobic006G198600 Sobic007G137350--Sobic006G198600 Sobic001G173800 Sobic001G173800 Sobic006G095400--Sobic001G173800 Sobic006G095400--Sobic009G228500 Sobic002G312800 Sobic002G312800 Sobic006G095400--Sobic002G312800 Sobic002G300500 Sobic002G300500 Sobic006G095400--Sobic002G300500 Sobic006G143200 Sobic006G143200 Sobic006G095400--Sobic006G143200 Sobic009G235200 Sobic009G235200 Sobic006G095400--Sobic009G235200 Sobic001G206500 Sobic001G206500 Sobic006G095400--Sobic001G206500 Sobic008G163500 Sobic008G163500 Sobic006G095400--Sobic008G163500 Sobic001G466600 Sobic001G466600 Sobic006G095400--Sobic001G466600 Sobic001G371100 Sobic001G371100 Sobic006G135000--Sobic001G371100 Sobic001G228200 Sobic001G228200 Sobic006G135000--Sobic001G228200 Sobic004G215700 Sobic004G215700 Sobic006G135000--Sobic004G215700 Sobic003G279800 Sobic003G279800 Sobic006G135000--Sobic003G279800 Sobic003G445000 Sobic003G445000 Sobic006G135000--Sobic003G445000 Sobic004G252000 Sobic004G252000 Sobic006G135000--Sobic004G252000 Sobic004G326600 Sobic004G326600 Sobic006G135000--Sobic004G326600 Sobic002G319200 Sobic002G319200 Sobic006G135000--Sobic002G319200 Sobic004G047200 Sobic004G047200 Sobic006G135000--Sobic004G047200 Sobic010G001800 Sobic010G001800 Sobic007G108100--Sobic010G001800 Sobic010G018000 Sobic010G018000 Sobic007G108100--Sobic010G018000 Sobic003G011100 Sobic003G011100 Sobic007G108100--Sobic003G011100 Sobic003G211100 Sobic003G211100 Sobic007G108100--Sobic003G211100 Sobic002G045100 Sobic002G045100 Sobic007G108100--Sobic002G045100 Sobic009G012700 Sobic009G012700 Sobic007G108100--Sobic009G012700 Sobic007G108100--Sobic001G493400 Sobic001G530800 Sobic001G530800 Sobic007G108100--Sobic001G530800 Sobic009G211700 Sobic009G211700 Sobic007G108100--Sobic009G211700 Sobic010G134100 Sobic010G134100 Sobic001G493400--Sobic010G134100 Sobic001G493400--Sobic004G002500 Sobic001G214900 Sobic001G214900 Sobic001G493400--Sobic001G214900 Sobic001G167500 Sobic001G167500 Sobic001G493400--Sobic001G167500 Sobic001G493400--Sobic004G082700 Sobic001G493400--Sobic007G108100 Sobic006G254300 Sobic006G254300 Sobic001G493400--Sobic006G254300 Sobic001G493400--Sobic001G228200 Sobic001G493400--Sobic001G371100 Sobic004G173100--Sobic009G071700 Sobic004G173100--Sobic006G251600 Sobic003G425100 Sobic003G425100 Sobic004G173100--Sobic003G425100 Sobic002G262100 Sobic002G262100 Sobic004G173100--Sobic002G262100 Sobic004G173100--Sobic006G198600 Sobic002G399200 Sobic002G399200 Sobic004G173100--Sobic002G399200 Sobic003G407600 Sobic003G407600 Sobic004G173100--Sobic003G407600 Sobic004G173100--Sobic005G100900 Sobic004G173100--Sobic008G163500 Sobic001G235700 Sobic001G235700 Sobic004G190600--Sobic001G235700 Sobic002G303800 Sobic002G303800 Sobic004G190600--Sobic002G303800 Sobic001G440900 Sobic001G440900 Sobic004G190600--Sobic001G440900 Sobic004G208100 Sobic004G208100 Sobic004G190600--Sobic004G208100 Sobic001G081700 Sobic001G081700 Sobic004G190600--Sobic001G081700 Sobic010G032700 Sobic010G032700 Sobic004G190600--Sobic010G032700 Sobic010G054600 Sobic010G054600 Sobic004G190600--Sobic010G054600 Sobic001G146900 Sobic001G146900 Sobic004G190600--Sobic001G146900 Sobic004G190600--Sobic001G371100 Sobic004G215900 Sobic004G215900 Sobic010G038800--Sobic004G215900 Sobic003G144000 Sobic003G144000 Sobic010G038800--Sobic003G144000 Sobic009G191500 Sobic009G191500 Sobic010G038800--Sobic009G191500 Sobic010G153300 Sobic010G153300 Sobic010G038800--Sobic010G153300 Sobic001G408300 Sobic001G408300 Sobic010G038800--Sobic001G408300 Sobic001G372800 Sobic001G372800 Sobic010G038800--Sobic001G372800 Sobic003G322200 Sobic003G322200 Sobic010G038800--Sobic003G322200 Sobic003G123200 Sobic003G123200 Sobic010G038800--Sobic003G123200 Sobic008G068100 Sobic008G068100 Sobic010G038800--Sobic008G068100 Sobic001G011000 Sobic001G011000 Sobic004G002500--Sobic001G011000 Sobic004G002500--Sobic010G134100 Sobic004G002500--Sobic001G493400 Sobic004G212100 Sobic004G212100 Sobic004G002500--Sobic004G212100 Sobic002G367800 Sobic002G367800 Sobic004G002500--Sobic002G367800 Sobic004G002500--Sobic001G214900 Sobic003G388900 Sobic003G388900 Sobic004G002500--Sobic003G388900 Sobic004G356300 Sobic004G356300 Sobic004G002500--Sobic004G356300 Sobic003G396800 Sobic003G396800 Sobic004G002500--Sobic003G396800
Octagon: transcription factors


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