Gene annotation
Transcriptome id Sobic.004G190600.1
Synonym Sb04g023870, NRP2
Functional annotation SET, putative, expressed
UniProt C5XVQ2
Pfam PF00956
Panther DB PTHR11875 PTHR11875:SF68
NCBI CDD KOG1508; DNA replication factor/protein phosphatase inhibitor SET/SPR-2
KEGG Orthology K11290; SET, TAF1, template-activating factor I
Gene Ontology GO:0006334; nucleosome assembly GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G18800 : NAP1-related protein 2
RAP-DB (Rice) LOC_Os02g36710.1 : SET, putative, expressed
MaizeGDB (Corn) Zm00025a031717 , Zm00025a020798
Brachypodium KQK00018
Barley HORVU6Hr1G051930.2 , HORVU6Hr1G051930.3 , HORVU6Hr1G051930.1 , HORVU6Hr1G051930.6 , HORVU6Hr1G051930.4 , HORVU6Hr1G051930.5
Wheat TraesCS2D02G323500 , TraesCS6B02G227700 , TraesCS6A02G202200 , TraesCS2B02G342400 , TraesCS2A02G344900 , TraesCS6D02G185800
Populus PNT00715 , PNT00718 , PNT00716 , PNT00717


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cDNA sequences
Sobic.004G190600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G235700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@translin, putative, expressed -
2 Sobic.002G303800 expressed protein -
3 Sobic.001G440900 LSM domain containing protein, expressed K11088: SNRPD3, small nuclear ribonucleoprotein D3
4 Sobic.004G208100 expressed protein -
5 Sobic.001G081700 SWIB/MDM2 domain containing protein, expressed -
6 Sobic.010G032700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase domain containing protein, expressed K11434: type I protein arginine methyltransferase
7 Sobic.010G054600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribonucleoside-diphosphate reductase large subunit, putative, expressed K10807: ribonucleoside-diphosphate reductase subunit M1
8 Sobic.001G146900 expressed protein -
9 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
10 Sobic.001G033000 ribosomal RNA large subunit methyltransferase J, putative, expressed -
11 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
12 Sobic.003G444300 expressed protein K11550: SPBC25, kinetochore protein Spc25, animal type
13 Sobic.009G214100 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
14 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
15 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A
16 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
17 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.003G211100 hyaluronan/mRNA binding family domain containing protein, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
19 Sobic.005G088900 AGAP007117-PA, putative, expressed -
20 Sobic.001G521100 POLD2 - Putative DNA polymerase delta complex subunit, expressed K02328: DNA polymerase delta subunit 2


Gene co-expression network
sample Sobic004G190600 Sobic004G190600 Sobic001G235700 Sobic001G235700 Sobic004G190600--Sobic001G235700 Sobic002G303800 Sobic002G303800 Sobic004G190600--Sobic002G303800 Sobic001G440900 Sobic001G440900 Sobic004G190600--Sobic001G440900 Sobic004G208100 Sobic004G208100 Sobic004G190600--Sobic004G208100 Sobic001G081700 Sobic001G081700 Sobic004G190600--Sobic001G081700 Sobic010G032700 Sobic010G032700 Sobic004G190600--Sobic010G032700 Sobic010G054600 Sobic010G054600 Sobic004G190600--Sobic010G054600 Sobic001G146900 Sobic001G146900 Sobic004G190600--Sobic001G146900 Sobic001G371100 Sobic001G371100 Sobic004G190600--Sobic001G371100 Sobic001G097400 Sobic001G097400 Sobic001G235700--Sobic001G097400 Sobic001G436300 Sobic001G436300 Sobic001G235700--Sobic001G436300 Sobic001G235700--Sobic004G208100 Sobic001G235700--Sobic004G190600 Sobic001G235700--Sobic001G440900 Sobic001G235700--Sobic002G303800 Sobic002G133000 Sobic002G133000 Sobic001G235700--Sobic002G133000 Sobic004G343600 Sobic004G343600 Sobic001G235700--Sobic004G343600 Sobic006G127500 Sobic006G127500 Sobic001G235700--Sobic006G127500 Sobic003G444300 Sobic003G444300 Sobic002G303800--Sobic003G444300 Sobic006G120600 Sobic006G120600 Sobic002G303800--Sobic006G120600 Sobic001G169800 Sobic001G169800 Sobic002G303800--Sobic001G169800 Sobic003G183700 Sobic003G183700 Sobic002G303800--Sobic003G183700 Sobic010G103700 Sobic010G103700 Sobic002G303800--Sobic010G103700 Sobic002G303800--Sobic001G146900 Sobic003G179500 Sobic003G179500 Sobic002G303800--Sobic003G179500 Sobic006G051000 Sobic006G051000 Sobic002G303800--Sobic006G051000 Sobic001G083300 Sobic001G083300 Sobic002G303800--Sobic001G083300 Sobic002G351100 Sobic002G351100 Sobic001G440900--Sobic002G351100 Sobic001G300400 Sobic001G300400 Sobic001G440900--Sobic001G300400 Sobic010G001800 Sobic010G001800 Sobic001G440900--Sobic010G001800 Sobic001G289900 Sobic001G289900 Sobic001G440900--Sobic001G289900 Sobic004G327600 Sobic004G327600 Sobic001G440900--Sobic004G327600 Sobic001G440900--Sobic001G235700 Sobic001G107300 Sobic001G107300 Sobic001G440900--Sobic001G107300 Sobic002G289800 Sobic002G289800 Sobic001G440900--Sobic002G289800 Sobic007G153700 Sobic007G153700 Sobic001G440900--Sobic007G153700 Sobic010G021900 Sobic010G021900 Sobic004G208100--Sobic010G021900 Sobic004G208100--Sobic003G444300 Sobic004G208100--Sobic002G303800 Sobic001G238900 Sobic001G238900 Sobic004G208100--Sobic001G238900 Sobic004G208100--Sobic002G133000 Sobic004G208100--Sobic001G169800 Sobic001G122100 Sobic001G122100 Sobic004G208100--Sobic001G122100 Sobic004G208100--Sobic001G235700 Sobic002G246900 Sobic002G246900 Sobic004G208100--Sobic002G246900 Sobic004G343700 Sobic004G343700 Sobic001G081700--Sobic004G343700 Sobic001G081700--Sobic004G190600 Sobic001G374800 Sobic001G374800 Sobic001G081700--Sobic001G374800 Sobic001G534300 Sobic001G534300 Sobic001G081700--Sobic001G534300 Sobic008G113300 Sobic008G113300 Sobic001G081700--Sobic008G113300 Sobic007G162400 Sobic007G162400 Sobic001G081700--Sobic007G162400 Sobic001G105800 Sobic001G105800 Sobic001G081700--Sobic001G105800 Sobic006G093200 Sobic006G093200 Sobic001G081700--Sobic006G093200 Sobic002G341700 Sobic002G341700 Sobic001G081700--Sobic002G341700 Sobic010G032700--Sobic001G371100 Sobic009G119700 Sobic009G119700 Sobic010G032700--Sobic009G119700 Sobic002G280700 Sobic002G280700 Sobic010G032700--Sobic002G280700 Sobic009G088200 Sobic009G088200 Sobic010G032700--Sobic009G088200 Sobic010G032700--Sobic004G343600 Sobic002G054000 Sobic002G054000 Sobic010G032700--Sobic002G054000 Sobic002G319200 Sobic002G319200 Sobic010G032700--Sobic002G319200 Sobic002G045100 Sobic002G045100 Sobic010G032700--Sobic002G045100 Sobic001G228200 Sobic001G228200 Sobic010G032700--Sobic001G228200 Sobic004G331600 Sobic004G331600 Sobic010G054600--Sobic004G331600 Sobic001G142000 Sobic001G142000 Sobic010G054600--Sobic001G142000 Sobic008G129200 Sobic008G129200 Sobic010G054600--Sobic008G129200 Sobic004G119700 Sobic004G119700 Sobic010G054600--Sobic004G119700 Sobic001G456500 Sobic001G456500 Sobic010G054600--Sobic001G456500 Sobic003G201000 Sobic003G201000 Sobic010G054600--Sobic003G201000 Sobic003G361200 Sobic003G361200 Sobic010G054600--Sobic003G361200 Sobic010G147700 Sobic010G147700 Sobic010G054600--Sobic010G147700 Sobic009G087000 Sobic009G087000 Sobic010G054600--Sobic009G087000 Sobic009G172950 Sobic009G172950 Sobic001G146900--Sobic009G172950 Sobic001G146900--Sobic009G087000 Sobic001G146900--Sobic003G183700 Sobic001G146900--Sobic001G456500 Sobic001G146900--Sobic001G083300 Sobic001G146900--Sobic002G303800 Sobic001G146900--Sobic003G444300 Sobic004G321400 Sobic004G321400 Sobic001G146900--Sobic004G321400 Sobic001G146900--Sobic001G169800 Sobic001G371100--Sobic010G032700 Sobic001G081900 Sobic001G081900 Sobic001G371100--Sobic001G081900 Sobic001G397000 Sobic001G397000 Sobic001G371100--Sobic001G397000 Sobic001G530800 Sobic001G530800 Sobic001G371100--Sobic001G530800 Sobic006G251600 Sobic006G251600 Sobic001G371100--Sobic006G251600 Sobic004G047200 Sobic004G047200 Sobic001G371100--Sobic004G047200 Sobic008G083400 Sobic008G083400 Sobic001G371100--Sobic008G083400 Sobic004G082700 Sobic004G082700 Sobic001G371100--Sobic004G082700 Sobic001G371100--Sobic001G228200
Octagon: transcription factors


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