Gene annotation
Transcriptome id Sobic.001G440900.1
Synonym Sb01g041430
Functional annotation LSM domain containing protein, expressed
UniProt C5WRK4
Pfam PF01423
Panther DB PTHR23338
NCBI CDD KOG3172; Small nuclear ribonucleoprotein Sm D3
KEGG Orthology K11088; SNRPD3, small nuclear ribonucleoprotein D3
Gene Ontology GO:0006396; RNA processing


Orthologs (automatic annotation)
TAIR AT1G20580 : Small nuclear ribonucleoprotein family protein
RAP-DB (Rice) LOC_Os03g13760.1 : LSM domain containing protein, expressed
MaizeGDB (Corn) Zm00025a018633 , Zm00025a001509 , Zm00025a052924
Brachypodium KQK22638 , KQJ92745
Barley HORVU3Hr1G047030.24 , HORVU5Hr1G015080.1 , HORVU3Hr1G047030.39 , HORVU3Hr1G047030.46 , HORVU3Hr1G047030.47 , HORVU3Hr1G047030.44 , HORVU3Hr1G047030.45 , HORVU3Hr1G047030.42 , HORVU3Hr1G047030.43 , HORVU3Hr1G047030.40 , HORVU3Hr1G047030.41 , HORVU4Hr1G089590.19 , HORVU4Hr1G089590.18
Wheat TraesCS4B02G392700 , TraesCS5A02G554700 , TraesCSU02G033900
Populus PNT47177 , PNT47178


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G351100 DNA repair protein Rad51, putative, expressed K04482: DNA repair protein RAD51
2 Sobic.001G300400 expansin precursor, putative, expressed -
3 Sobic.010G001800 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
4 Sobic.001G289900 AT hook motif domain containing protein, expressed -
5 Sobic.004G327600 expressed protein -
6 Sobic.001G235700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@translin, putative, expressed -
7 Sobic.001G107300 WD repeat-containing protein 5, putative, expressed K14963: WDR5, SWD3, COMPASS component SWD3
8 Sobic.002G289800 HMG1/2, putative, expressed -
9 Sobic.007G153700 transcription regulator, putative, expressed -
10 Sobic.001G116600 inactive receptor kinase At2g26730 precursor, putative, expressed -
11 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
12 Sobic.002G284100 ATROPGEF7/ROPGEF7, putative, expressed -
13 Sobic.001G231200 expressed protein -
14 Sobic.001G505000 cyclin-dependent kinases regulatory subunit 1, putative, expressed K02219: cyclin-dependent kinase regulatory subunit CKS1
15 Sobic.003G444300 expressed protein K11550: SPBC25, kinetochore protein Spc25, animal type
16 Sobic.004G208100 expressed protein -
17 Sobic.006G013900 RNA polymerase subunit, putative, expressed K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11
18 Sobic.006G160200 MSP domain containing protein, expressed -
19 Sobic.003G387700 expressed protein -
20 Sobic.004G357500 expressed protein -


Gene co-expression network
sample Sobic001G440900 Sobic001G440900 Sobic002G351100 Sobic002G351100 Sobic001G440900--Sobic002G351100 Sobic001G300400 Sobic001G300400 Sobic001G440900--Sobic001G300400 Sobic010G001800 Sobic010G001800 Sobic001G440900--Sobic010G001800 Sobic001G289900 Sobic001G289900 Sobic001G440900--Sobic001G289900 Sobic004G327600 Sobic004G327600 Sobic001G440900--Sobic004G327600 Sobic001G235700 Sobic001G235700 Sobic001G440900--Sobic001G235700 Sobic001G107300 Sobic001G107300 Sobic001G440900--Sobic001G107300 Sobic002G289800 Sobic002G289800 Sobic001G440900--Sobic002G289800 Sobic007G153700 Sobic007G153700 Sobic001G440900--Sobic007G153700 Sobic002G351100--Sobic001G300400 Sobic003G297200 Sobic003G297200 Sobic002G351100--Sobic003G297200 Sobic001G521100 Sobic001G521100 Sobic002G351100--Sobic001G521100 Sobic003G244000 Sobic003G244000 Sobic002G351100--Sobic003G244000 Sobic002G315400 Sobic002G315400 Sobic002G351100--Sobic002G315400 Sobic009G194900 Sobic009G194900 Sobic002G351100--Sobic009G194900 Sobic002G351100--Sobic001G440900 Sobic002G246900 Sobic002G246900 Sobic002G351100--Sobic002G246900 Sobic001G238900 Sobic001G238900 Sobic002G351100--Sobic001G238900 Sobic001G300400--Sobic002G351100 Sobic001G300400--Sobic001G289900 Sobic006G236800 Sobic006G236800 Sobic001G300400--Sobic006G236800 Sobic001G300400--Sobic003G297200 Sobic004G047100 Sobic004G047100 Sobic001G300400--Sobic004G047100 Sobic001G300400--Sobic002G289800 Sobic002G426800 Sobic002G426800 Sobic001G300400--Sobic002G426800 Sobic003G102000 Sobic003G102000 Sobic001G300400--Sobic003G102000 Sobic001G091500 Sobic001G091500 Sobic001G300400--Sobic001G091500 Sobic010G001800--Sobic001G440900 Sobic007G108100 Sobic007G108100 Sobic010G001800--Sobic007G108100 Sobic002G241500 Sobic002G241500 Sobic010G001800--Sobic002G241500 Sobic010G159100 Sobic010G159100 Sobic010G001800--Sobic010G159100 Sobic001G505000 Sobic001G505000 Sobic010G001800--Sobic001G505000 Sobic008G008300 Sobic008G008300 Sobic010G001800--Sobic008G008300 Sobic008G093200 Sobic008G093200 Sobic010G001800--Sobic008G093200 Sobic001G108400 Sobic001G108400 Sobic010G001800--Sobic001G108400 Sobic009G001200 Sobic009G001200 Sobic010G001800--Sobic009G001200 Sobic010G105400 Sobic010G105400 Sobic001G289900--Sobic010G105400 Sobic001G289900--Sobic002G289800 Sobic007G132900 Sobic007G132900 Sobic001G289900--Sobic007G132900 Sobic003G387700 Sobic003G387700 Sobic001G289900--Sobic003G387700 Sobic001G289900--Sobic004G047100 Sobic001G398400 Sobic001G398400 Sobic001G289900--Sobic001G398400 Sobic004G273000 Sobic004G273000 Sobic001G289900--Sobic004G273000 Sobic001G289900--Sobic001G091500 Sobic001G289900--Sobic002G426800 Sobic001G105800 Sobic001G105800 Sobic004G327600--Sobic001G105800 Sobic004G327600--Sobic002G289800 Sobic002G128000 Sobic002G128000 Sobic004G327600--Sobic002G128000 Sobic003G085900 Sobic003G085900 Sobic004G327600--Sobic003G085900 Sobic010G092400 Sobic010G092400 Sobic004G327600--Sobic010G092400 Sobic004G327600--Sobic001G289900 Sobic004G075900 Sobic004G075900 Sobic004G327600--Sobic004G075900 Sobic005G062600 Sobic005G062600 Sobic004G327600--Sobic005G062600 Sobic003G444300 Sobic003G444300 Sobic004G327600--Sobic003G444300 Sobic001G097400 Sobic001G097400 Sobic001G235700--Sobic001G097400 Sobic001G436300 Sobic001G436300 Sobic001G235700--Sobic001G436300 Sobic004G208100 Sobic004G208100 Sobic001G235700--Sobic004G208100 Sobic004G190600 Sobic004G190600 Sobic001G235700--Sobic004G190600 Sobic001G235700--Sobic001G440900 Sobic002G303800 Sobic002G303800 Sobic001G235700--Sobic002G303800 Sobic002G133000 Sobic002G133000 Sobic001G235700--Sobic002G133000 Sobic004G343600 Sobic004G343600 Sobic001G235700--Sobic004G343600 Sobic006G127500 Sobic006G127500 Sobic001G235700--Sobic006G127500 Sobic001G107300--Sobic004G343600 Sobic001G107300--Sobic001G505000 Sobic004G047500 Sobic004G047500 Sobic001G107300--Sobic004G047500 Sobic002G353500 Sobic002G353500 Sobic001G107300--Sobic002G353500 Sobic006G013900 Sobic006G013900 Sobic001G107300--Sobic006G013900 Sobic003G109200 Sobic003G109200 Sobic001G107300--Sobic003G109200 Sobic001G107300--Sobic001G440900 Sobic001G162800 Sobic001G162800 Sobic001G107300--Sobic001G162800 Sobic001G107300--Sobic001G436300 Sobic002G289800--Sobic001G289900 Sobic007G017700 Sobic007G017700 Sobic002G289800--Sobic007G017700 Sobic003G316601 Sobic003G316601 Sobic002G289800--Sobic003G316601 Sobic004G237000 Sobic004G237000 Sobic002G289800--Sobic004G237000 Sobic002G289800--Sobic004G327600 Sobic002G289800--Sobic007G132900 Sobic010G222100 Sobic010G222100 Sobic002G289800--Sobic010G222100 Sobic002G289800--Sobic001G300400 Sobic006G081800 Sobic006G081800 Sobic002G289800--Sobic006G081800 Sobic001G239100 Sobic001G239100 Sobic007G153700--Sobic001G239100 Sobic001G468000 Sobic001G468000 Sobic007G153700--Sobic001G468000 Sobic009G006900 Sobic009G006900 Sobic007G153700--Sobic009G006900 Sobic007G153700--Sobic001G440900 Sobic003G274400 Sobic003G274400 Sobic007G153700--Sobic003G274400 Sobic010G237800 Sobic010G237800 Sobic007G153700--Sobic010G237800 Sobic004G129600 Sobic004G129600 Sobic007G153700--Sobic004G129600 Sobic002G374200 Sobic002G374200 Sobic007G153700--Sobic002G374200 Sobic002G196500 Sobic002G196500 Sobic007G153700--Sobic002G196500
Octagon: transcription factors


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