Gene annotation
Transcriptome id Sobic.010G001800.1
Synonym Sb10g000380
Functional annotation DNA-binding protein-related, putative, expressed
UniProt C5Z230
Pfam -
Panther DB PTHR31472 PTHR31472:SF3
NCBI CDD -
KEGG Orthology K07466; RFA1, RPA1, replication factor A1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G33845 : Nucleic acid-binding, OB-fold-like protein
RAP-DB (Rice) LOC_Os06g01370.1 : DNA-binding protein-related, putative, expressed
MaizeGDB (Corn) Zm00025a041154 , Zm00025a050348
Brachypodium KQK20078
Barley -
Wheat TraesCS7A02G003800
Populus -


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cDNA sequences
Sobic.010G001800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G440900 LSM domain containing protein, expressed K11088: SNRPD3, small nuclear ribonucleoprotein D3
2 Sobic.007G108100 co-chaperone protein SBA1, putative, expressed -
3 Sobic.002G241500 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -
4 Sobic.010G159100 DUF538 domain containing protein, putative, expressed -
5 Sobic.001G505000 cyclin-dependent kinases regulatory subunit 1, putative, expressed K02219: cyclin-dependent kinase regulatory subunit CKS1
6 Sobic.008G008300 expressed protein -
7 Sobic.008G093200 expressed protein -
8 Sobic.001G108400 LRR receptor-like protein kinase, putative, expressed -
9 Sobic.009G001200 zinc finger, C3HC4 type domain containing protein, expressed K10638: UHRF1, E3 ubiquitin-protein ligase UHRF1
10 Sobic.009G012700 LSM domain containing protein, expressed K11096: SNRPD2, small nuclear ribonucleoprotein D2
11 Sobic.006G207400 expressed protein -
12 Sobic.001G196100 src homology-3 domain protein 3, putative, expressed -
13 Sobic.009G188300 universal stress protein domain containing protein, putative, expressed -
14 Sobic.001G289900 AT hook motif domain containing protein, expressed -
15 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
16 Sobic.003G211100 hyaluronan/mRNA binding family domain containing protein, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
17 Sobic.004G225300 e2f-associated phosphoprotein, putative, expressed -
18 Sobic.001G404700 protein kinase, putative, expressed -
19 Sobic.002G045100 LSM domain containing protein, expressed K11086: SNRPB, small nuclear ribonucleoprotein B and B'
20 Sobic.004G027000 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1


Gene co-expression network
sample Sobic010G001800 Sobic010G001800 Sobic001G440900 Sobic001G440900 Sobic010G001800--Sobic001G440900 Sobic007G108100 Sobic007G108100 Sobic010G001800--Sobic007G108100 Sobic002G241500 Sobic002G241500 Sobic010G001800--Sobic002G241500 Sobic010G159100 Sobic010G159100 Sobic010G001800--Sobic010G159100 Sobic001G505000 Sobic001G505000 Sobic010G001800--Sobic001G505000 Sobic008G008300 Sobic008G008300 Sobic010G001800--Sobic008G008300 Sobic008G093200 Sobic008G093200 Sobic010G001800--Sobic008G093200 Sobic001G108400 Sobic001G108400 Sobic010G001800--Sobic001G108400 Sobic009G001200 Sobic009G001200 Sobic010G001800--Sobic009G001200 Sobic002G351100 Sobic002G351100 Sobic001G440900--Sobic002G351100 Sobic001G300400 Sobic001G300400 Sobic001G440900--Sobic001G300400 Sobic001G440900--Sobic010G001800 Sobic001G289900 Sobic001G289900 Sobic001G440900--Sobic001G289900 Sobic004G327600 Sobic004G327600 Sobic001G440900--Sobic004G327600 Sobic001G235700 Sobic001G235700 Sobic001G440900--Sobic001G235700 Sobic001G107300 Sobic001G107300 Sobic001G440900--Sobic001G107300 Sobic002G289800 Sobic002G289800 Sobic001G440900--Sobic002G289800 Sobic007G153700 Sobic007G153700 Sobic001G440900--Sobic007G153700 Sobic007G108100--Sobic010G001800 Sobic010G018000 Sobic010G018000 Sobic007G108100--Sobic010G018000 Sobic003G011100 Sobic003G011100 Sobic007G108100--Sobic003G011100 Sobic003G211100 Sobic003G211100 Sobic007G108100--Sobic003G211100 Sobic002G045100 Sobic002G045100 Sobic007G108100--Sobic002G045100 Sobic009G012700 Sobic009G012700 Sobic007G108100--Sobic009G012700 Sobic001G493400 Sobic001G493400 Sobic007G108100--Sobic001G493400 Sobic001G530800 Sobic001G530800 Sobic007G108100--Sobic001G530800 Sobic009G211700 Sobic009G211700 Sobic007G108100--Sobic009G211700 Sobic006G281200 Sobic006G281200 Sobic002G241500--Sobic006G281200 Sobic002G241500--Sobic010G001800 Sobic002G241500--Sobic010G159100 Sobic003G003000 Sobic003G003000 Sobic002G241500--Sobic003G003000 Sobic003G283300 Sobic003G283300 Sobic002G241500--Sobic003G283300 Sobic002G361900 Sobic002G361900 Sobic002G241500--Sobic002G361900 Sobic006G181700 Sobic006G181700 Sobic002G241500--Sobic006G181700 Sobic008G127500 Sobic008G127500 Sobic002G241500--Sobic008G127500 Sobic001G110300 Sobic001G110300 Sobic002G241500--Sobic001G110300 Sobic010G159100--Sobic002G241500 Sobic010G159100--Sobic010G001800 Sobic002G247800 Sobic002G247800 Sobic010G159100--Sobic002G247800 Sobic004G285900 Sobic004G285900 Sobic010G159100--Sobic004G285900 Sobic001G389300 Sobic001G389300 Sobic010G159100--Sobic001G389300 Sobic010G159100--Sobic001G108400 Sobic007G225400 Sobic007G225400 Sobic010G159100--Sobic007G225400 Sobic007G214700 Sobic007G214700 Sobic010G159100--Sobic007G214700 Sobic002G179150 Sobic002G179150 Sobic010G159100--Sobic002G179150 Sobic009G165500 Sobic009G165500 Sobic001G505000--Sobic009G165500 Sobic001G505000--Sobic001G107300 Sobic006G149200 Sobic006G149200 Sobic001G505000--Sobic006G149200 Sobic001G505000--Sobic002G289800 Sobic010G222100 Sobic010G222100 Sobic001G505000--Sobic010G222100 Sobic006G115000 Sobic006G115000 Sobic001G505000--Sobic006G115000 Sobic006G013900 Sobic006G013900 Sobic001G505000--Sobic006G013900 Sobic001G429000 Sobic001G429000 Sobic001G505000--Sobic001G429000 Sobic003G174700 Sobic003G174700 Sobic001G505000--Sobic003G174700 Sobic001G136500 Sobic001G136500 Sobic008G008300--Sobic001G136500 Sobic008G008300--Sobic010G001800 Sobic001G132900 Sobic001G132900 Sobic008G008300--Sobic001G132900 Sobic003G016400 Sobic003G016400 Sobic008G008300--Sobic003G016400 Sobic004G206300 Sobic004G206300 Sobic008G008300--Sobic004G206300 Sobic001G099800 Sobic001G099800 Sobic008G008300--Sobic001G099800 Sobic008G107900 Sobic008G107900 Sobic008G008300--Sobic008G107900 Sobic008G125000 Sobic008G125000 Sobic008G008300--Sobic008G125000 Sobic009G256700 Sobic009G256700 Sobic008G008300--Sobic009G256700 Sobic005G105500 Sobic005G105500 Sobic008G093200--Sobic005G105500 Sobic001G096100 Sobic001G096100 Sobic008G093200--Sobic001G096100 Sobic003G103400 Sobic003G103400 Sobic008G093200--Sobic003G103400 Sobic003G028100 Sobic003G028100 Sobic008G093200--Sobic003G028100 Sobic001G196100 Sobic001G196100 Sobic008G093200--Sobic001G196100 Sobic009G258600 Sobic009G258600 Sobic008G093200--Sobic009G258600 Sobic001G431700 Sobic001G431700 Sobic008G093200--Sobic001G431700 Sobic006G002201 Sobic006G002201 Sobic008G093200--Sobic006G002201 Sobic008G018000 Sobic008G018000 Sobic008G093200--Sobic008G018000 Sobic007G044400 Sobic007G044400 Sobic001G108400--Sobic007G044400 Sobic003G410600 Sobic003G410600 Sobic001G108400--Sobic003G410600 Sobic002G313600 Sobic002G313600 Sobic001G108400--Sobic002G313600 Sobic001G108400--Sobic009G001200 Sobic001G404700 Sobic001G404700 Sobic001G108400--Sobic001G404700 Sobic006G207400 Sobic006G207400 Sobic001G108400--Sobic006G207400 Sobic003G017500 Sobic003G017500 Sobic001G108400--Sobic003G017500 Sobic001G169800 Sobic001G169800 Sobic001G108400--Sobic001G169800 Sobic001G026600 Sobic001G026600 Sobic001G108400--Sobic001G026600 Sobic009G001200--Sobic003G410600 Sobic003G345200 Sobic003G345200 Sobic009G001200--Sobic003G345200 Sobic009G001200--Sobic001G108400 Sobic004G119700 Sobic004G119700 Sobic009G001200--Sobic004G119700 Sobic002G161700 Sobic002G161700 Sobic009G001200--Sobic002G161700 Sobic010G003100 Sobic010G003100 Sobic009G001200--Sobic010G003100 Sobic004G197400 Sobic004G197400 Sobic009G001200--Sobic004G197400 Sobic001G122100 Sobic001G122100 Sobic009G001200--Sobic001G122100 Sobic001G051300 Sobic001G051300 Sobic009G001200--Sobic001G051300
Octagon: transcription factors


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