Gene annotation
Transcriptome id Sobic.009G012700.1
Synonym Sb09g001270
Functional annotation LSM domain containing protein, expressed
UniProt B3VTC7
Pfam PF01423
Panther DB PTHR12777
NCBI CDD KOG3459; Small nuclear ribonucleoprotein (snRNP) Sm core protein
KEGG Orthology K11096; SNRPD2, small nuclear ribonucleoprotein D2
Gene Ontology GO:0008380; RNA splicing


Orthologs (automatic annotation)
TAIR AT2G47640 : Small nuclear ribonucleoprotein family protein
RAP-DB (Rice) LOC_Os05g24970.2 : LSM domain containing protein, expressed
MaizeGDB (Corn) Zm00025a040947
Brachypodium -
Barley HORVU3Hr1G113110.1 , HORVU3Hr1G113110.2 , HORVU3Hr1G113110.3
Wheat TraesCS5A02G529800 , TraesCS5A02G529800 , TraesCS3B02G584900 , TraesCS3D02G524800 , TraesCS3A02G517300
Populus -


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cDNA sequences
Sobic.009G012700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G149450 - -
2 Sobic.004G342400 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
3 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
4 Sobic.002G045100 LSM domain containing protein, expressed K11086: SNRPB, small nuclear ribonucleoprotein B and B'
5 Sobic.003G287300 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
6 Sobic.010G210000 ubiquitin family protein, putative, expressed K12158: ubiquitin-like protein Nedd8
7 Sobic.010G023900 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
8 Sobic.003G011100 reticulon domain containing protein, putative, expressed -
9 Sobic.004G002350 - K11088: SNRPD3, small nuclear ribonucleoprotein D3
10 Sobic.008G100000 40S ribosomal protein S9-2, putative, expressed K02997: RP-S9e, small subunit ribosomal protein S9e
11 Sobic.006G052400 LSM domain containing protein, expressed K12625: U6 snRNA-associated Sm-like protein LSm6
12 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
13 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
14 Sobic.003G160900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
15 Sobic.001G431700 expressed protein K18171: COX assembly mitochondrial protein 1
16 Sobic.003G018600 LSM domain containing protein, expressed K11097: SNRPE, small nuclear ribonucleoprotein E
17 Sobic.004G216800 h/ACA ribonucleoprotein complex subunit 3, putative, expressed K11130: NOP10, H/ACA ribonucleoprotein complex subunit 3
18 Sobic.009G258600 LSM domain containing protein, expressed K12627: U6 snRNA-associated Sm-like protein LSm8
19 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
20 Sobic.003G367900 LSM domain containing protein, expressed K12622: U6 snRNA-associated Sm-like protein LSm3


Gene co-expression network
sample Sobic009G012700 Sobic009G012700 Sobic008G149450 Sobic008G149450 Sobic009G012700--Sobic008G149450 Sobic004G342400 Sobic004G342400 Sobic009G012700--Sobic004G342400 Sobic006G115000 Sobic006G115000 Sobic009G012700--Sobic006G115000 Sobic002G045100 Sobic002G045100 Sobic009G012700--Sobic002G045100 Sobic003G287300 Sobic003G287300 Sobic009G012700--Sobic003G287300 Sobic010G210000 Sobic010G210000 Sobic009G012700--Sobic010G210000 Sobic010G023900 Sobic010G023900 Sobic009G012700--Sobic010G023900 Sobic003G011100 Sobic003G011100 Sobic009G012700--Sobic003G011100 Sobic004G002350 Sobic004G002350 Sobic009G012700--Sobic004G002350 Sobic009G227400 Sobic009G227400 Sobic008G149450--Sobic009G227400 Sobic008G149450--Sobic010G023900 Sobic001G018800 Sobic001G018800 Sobic008G149450--Sobic001G018800 Sobic004G216800 Sobic004G216800 Sobic008G149450--Sobic004G216800 Sobic002G286900 Sobic002G286900 Sobic008G149450--Sobic002G286900 Sobic008G149450--Sobic004G342400 Sobic009G144300 Sobic009G144300 Sobic008G149450--Sobic009G144300 Sobic003G018600 Sobic003G018600 Sobic008G149450--Sobic003G018600 Sobic010G060500 Sobic010G060500 Sobic008G149450--Sobic010G060500 Sobic004G342400--Sobic010G023900 Sobic009G179100 Sobic009G179100 Sobic004G342400--Sobic009G179100 Sobic001G334300 Sobic001G334300 Sobic004G342400--Sobic001G334300 Sobic004G342400--Sobic009G144300 Sobic009G101700 Sobic009G101700 Sobic004G342400--Sobic009G101700 Sobic009G233400 Sobic009G233400 Sobic004G342400--Sobic009G233400 Sobic002G304900 Sobic002G304900 Sobic004G342400--Sobic002G304900 Sobic003G387900 Sobic003G387900 Sobic004G342400--Sobic003G387900 Sobic009G173500 Sobic009G173500 Sobic004G342400--Sobic009G173500 Sobic006G115000--Sobic003G018600 Sobic006G115000--Sobic002G286900 Sobic006G115000--Sobic010G023900 Sobic006G115000--Sobic009G233400 Sobic003G249700 Sobic003G249700 Sobic006G115000--Sobic003G249700 Sobic010G069400 Sobic010G069400 Sobic006G115000--Sobic010G069400 Sobic006G137100 Sobic006G137100 Sobic006G115000--Sobic006G137100 Sobic006G115000--Sobic003G387900 Sobic002G331300 Sobic002G331300 Sobic006G115000--Sobic002G331300 Sobic007G143000 Sobic007G143000 Sobic002G045100--Sobic007G143000 Sobic005G164700 Sobic005G164700 Sobic002G045100--Sobic005G164700 Sobic002G045100--Sobic009G012700 Sobic002G319200 Sobic002G319200 Sobic002G045100--Sobic002G319200 Sobic003G160900 Sobic003G160900 Sobic002G045100--Sobic003G160900 Sobic007G034400 Sobic007G034400 Sobic002G045100--Sobic007G034400 Sobic002G045100--Sobic004G002350 Sobic010G018000 Sobic010G018000 Sobic002G045100--Sobic010G018000 Sobic001G371100 Sobic001G371100 Sobic002G045100--Sobic001G371100 Sobic001G025600 Sobic001G025600 Sobic003G287300--Sobic001G025600 Sobic003G287300--Sobic003G160900 Sobic001G481700 Sobic001G481700 Sobic003G287300--Sobic001G481700 Sobic001G096100 Sobic001G096100 Sobic003G287300--Sobic001G096100 Sobic003G287300--Sobic004G342400 Sobic008G073300 Sobic008G073300 Sobic003G287300--Sobic008G073300 Sobic003G442400 Sobic003G442400 Sobic003G287300--Sobic003G442400 Sobic002G371100 Sobic002G371100 Sobic003G287300--Sobic002G371100 Sobic003G287300--Sobic010G023900 Sobic010G210000--Sobic003G018600 Sobic002G376500 Sobic002G376500 Sobic010G210000--Sobic002G376500 Sobic010G210000--Sobic006G115000 Sobic003G362400 Sobic003G362400 Sobic010G210000--Sobic003G362400 Sobic010G210000--Sobic009G012700 Sobic009G050200 Sobic009G050200 Sobic010G210000--Sobic009G050200 Sobic003G073900 Sobic003G073900 Sobic010G210000--Sobic003G073900 Sobic010G210000--Sobic001G018800 Sobic004G062400 Sobic004G062400 Sobic010G210000--Sobic004G062400 Sobic010G023900--Sobic004G342400 Sobic010G023900--Sobic001G334300 Sobic010G023900--Sobic009G227400 Sobic010G023900--Sobic002G286900 Sobic010G023900--Sobic003G387900 Sobic010G023900--Sobic009G179100 Sobic010G023900--Sobic009G233400 Sobic006G213000 Sobic006G213000 Sobic010G023900--Sobic006G213000 Sobic001G226500 Sobic001G226500 Sobic010G023900--Sobic001G226500 Sobic007G150800 Sobic007G150800 Sobic003G011100--Sobic007G150800 Sobic006G216600 Sobic006G216600 Sobic003G011100--Sobic006G216600 Sobic001G475500 Sobic001G475500 Sobic003G011100--Sobic001G475500 Sobic006G201500 Sobic006G201500 Sobic003G011100--Sobic006G201500 Sobic003G396600 Sobic003G396600 Sobic003G011100--Sobic003G396600 Sobic003G011100--Sobic009G144300 Sobic003G011100--Sobic006G115000 Sobic003G011100--Sobic003G387900 Sobic003G011100--Sobic009G233400 Sobic003G025200 Sobic003G025200 Sobic004G002350--Sobic003G025200 Sobic002G049300 Sobic002G049300 Sobic004G002350--Sobic002G049300 Sobic001G377800 Sobic001G377800 Sobic004G002350--Sobic001G377800 Sobic008G098800 Sobic008G098800 Sobic004G002350--Sobic008G098800 Sobic004G002350--Sobic003G018600 Sobic004G002350--Sobic001G018800 Sobic002G374900 Sobic002G374900 Sobic004G002350--Sobic002G374900 Sobic010G166100 Sobic010G166100 Sobic004G002350--Sobic010G166100 Sobic004G002350--Sobic006G115000
Octagon: transcription factors


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