Gene annotation
Transcriptome id Sobic.001G431700.1
Synonym Sb01g040610
Functional annotation expressed protein
UniProt C5WQT5
Pfam PF08583
Panther DB PTHR22977
NCBI CDD KOG4624; Uncharacterized conserved protein
KEGG Orthology K18171; COX assembly mitochondrial protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G16060 : Cytochrome c oxidase biogenesis protein Cmc1-like
RAP-DB (Rice) LOC_Os03g15240.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G018000 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17780: mitochondrial import inner membrane translocase subunit TIM8
2 Sobic.009G012700 LSM domain containing protein, expressed K11096: SNRPD2, small nuclear ribonucleoprotein D2
3 Sobic.006G079900 COP9 signalosome complex subunit 8, putative, expressed K12181: COPS8, COP9 signalosome complex subunit 8
4 Sobic.003G287300 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
5 Sobic.010G018000 39S ribosomal protein L47, mitochondrial precursor, putative, expressed K17428: MRPL47, large subunit ribosomal protein L47
6 Sobic.008G093200 expressed protein -
7 Sobic.010G013900 DAG protein, chloroplast precursor, putative, expressed -
8 Sobic.006G052400 LSM domain containing protein, expressed K12625: U6 snRNA-associated Sm-like protein LSm6
9 Sobic.002G371200 LSM domain containing protein, expressed K11099: SNRPG, small nuclear ribonucleoprotein G
10 Sobic.004G342400 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
11 Sobic.003G028100 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
12 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
13 Sobic.007G143000 ribosomal protein S17, putative, expressed K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
14 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
15 Sobic.002G045100 LSM domain containing protein, expressed K11086: SNRPB, small nuclear ribonucleoprotein B and B'
16 Sobic.004G336600 PCNA - Putative DNA replicative polymerase clamp, expressed K04802: proliferating cell nuclear antigen
17 Sobic.004G216800 h/ACA ribonucleoprotein complex subunit 3, putative, expressed K11130: NOP10, H/ACA ribonucleoprotein complex subunit 3
18 Sobic.009G016500 expressed protein -
19 Sobic.007G108100 co-chaperone protein SBA1, putative, expressed -
20 Sobic.009G130400 DNA-directed RNA polymerase II subunit RPB7, putative, expressed K03015: RPB7, DNA-directed RNA polymerase II subunit RPB7


Gene co-expression network
sample Sobic001G431700 Sobic001G431700 Sobic008G018000 Sobic008G018000 Sobic001G431700--Sobic008G018000 Sobic009G012700 Sobic009G012700 Sobic001G431700--Sobic009G012700 Sobic006G079900 Sobic006G079900 Sobic001G431700--Sobic006G079900 Sobic003G287300 Sobic003G287300 Sobic001G431700--Sobic003G287300 Sobic010G018000 Sobic010G018000 Sobic001G431700--Sobic010G018000 Sobic008G093200 Sobic008G093200 Sobic001G431700--Sobic008G093200 Sobic010G013900 Sobic010G013900 Sobic001G431700--Sobic010G013900 Sobic006G052400 Sobic006G052400 Sobic001G431700--Sobic006G052400 Sobic002G371200 Sobic002G371200 Sobic001G431700--Sobic002G371200 Sobic008G018000--Sobic001G431700 Sobic008G018000--Sobic003G287300 Sobic008G018000--Sobic006G079900 Sobic008G018000--Sobic008G093200 Sobic008G018000--Sobic006G052400 Sobic004G138300 Sobic004G138300 Sobic008G018000--Sobic004G138300 Sobic003G028100 Sobic003G028100 Sobic008G018000--Sobic003G028100 Sobic008G018000--Sobic009G012700 Sobic003G367900 Sobic003G367900 Sobic008G018000--Sobic003G367900 Sobic008G149450 Sobic008G149450 Sobic009G012700--Sobic008G149450 Sobic004G342400 Sobic004G342400 Sobic009G012700--Sobic004G342400 Sobic006G115000 Sobic006G115000 Sobic009G012700--Sobic006G115000 Sobic002G045100 Sobic002G045100 Sobic009G012700--Sobic002G045100 Sobic009G012700--Sobic003G287300 Sobic010G210000 Sobic010G210000 Sobic009G012700--Sobic010G210000 Sobic010G023900 Sobic010G023900 Sobic009G012700--Sobic010G023900 Sobic003G011100 Sobic003G011100 Sobic009G012700--Sobic003G011100 Sobic004G002350 Sobic004G002350 Sobic009G012700--Sobic004G002350 Sobic007G217400 Sobic007G217400 Sobic006G079900--Sobic007G217400 Sobic009G124400 Sobic009G124400 Sobic006G079900--Sobic009G124400 Sobic003G190800 Sobic003G190800 Sobic006G079900--Sobic003G190800 Sobic002G331300 Sobic002G331300 Sobic006G079900--Sobic002G331300 Sobic006G079900--Sobic003G028100 Sobic001G542900 Sobic001G542900 Sobic006G079900--Sobic001G542900 Sobic006G079900--Sobic001G431700 Sobic006G079900--Sobic003G367900 Sobic001G404100 Sobic001G404100 Sobic006G079900--Sobic001G404100 Sobic001G025600 Sobic001G025600 Sobic003G287300--Sobic001G025600 Sobic003G160900 Sobic003G160900 Sobic003G287300--Sobic003G160900 Sobic001G481700 Sobic001G481700 Sobic003G287300--Sobic001G481700 Sobic001G096100 Sobic001G096100 Sobic003G287300--Sobic001G096100 Sobic003G287300--Sobic004G342400 Sobic008G073300 Sobic008G073300 Sobic003G287300--Sobic008G073300 Sobic003G442400 Sobic003G442400 Sobic003G287300--Sobic003G442400 Sobic002G371100 Sobic002G371100 Sobic003G287300--Sobic002G371100 Sobic003G287300--Sobic010G023900 Sobic003G326900 Sobic003G326900 Sobic010G018000--Sobic003G326900 Sobic001G129400 Sobic001G129400 Sobic010G018000--Sobic001G129400 Sobic003G003000 Sobic003G003000 Sobic010G018000--Sobic003G003000 Sobic007G034400 Sobic007G034400 Sobic010G018000--Sobic007G034400 Sobic007G143000 Sobic007G143000 Sobic010G018000--Sobic007G143000 Sobic010G018000--Sobic002G045100 Sobic010G018000--Sobic003G367900 Sobic007G108100 Sobic007G108100 Sobic010G018000--Sobic007G108100 Sobic010G018000--Sobic001G431700 Sobic005G105500 Sobic005G105500 Sobic008G093200--Sobic005G105500 Sobic008G093200--Sobic001G096100 Sobic003G103400 Sobic003G103400 Sobic008G093200--Sobic003G103400 Sobic008G093200--Sobic003G028100 Sobic001G196100 Sobic001G196100 Sobic008G093200--Sobic001G196100 Sobic009G258600 Sobic009G258600 Sobic008G093200--Sobic009G258600 Sobic008G093200--Sobic001G431700 Sobic006G002201 Sobic006G002201 Sobic008G093200--Sobic006G002201 Sobic008G093200--Sobic008G018000 Sobic010G013900--Sobic001G025600 Sobic010G013900--Sobic002G371100 Sobic005G027300 Sobic005G027300 Sobic010G013900--Sobic005G027300 Sobic010G013900--Sobic001G481700 Sobic004G248900 Sobic004G248900 Sobic010G013900--Sobic004G248900 Sobic010G013900--Sobic004G002350 Sobic003G196800 Sobic003G196800 Sobic010G013900--Sobic003G196800 Sobic001G117400 Sobic001G117400 Sobic010G013900--Sobic001G117400 Sobic010G013900--Sobic003G028100 Sobic008G058300 Sobic008G058300 Sobic006G052400--Sobic008G058300 Sobic001G058900 Sobic001G058900 Sobic006G052400--Sobic001G058900 Sobic009G050200 Sobic009G050200 Sobic006G052400--Sobic009G050200 Sobic006G052400--Sobic001G096100 Sobic006G052400--Sobic006G115000 Sobic001G225700 Sobic001G225700 Sobic006G052400--Sobic001G225700 Sobic006G052400--Sobic003G442400 Sobic003G018600 Sobic003G018600 Sobic006G052400--Sobic003G018600 Sobic009G117000 Sobic009G117000 Sobic006G052400--Sobic009G117000 Sobic002G371200--Sobic009G012700 Sobic002G371200--Sobic001G431700 Sobic002G371200--Sobic009G258600 Sobic002G371200--Sobic010G210000 Sobic006G121400 Sobic006G121400 Sobic002G371200--Sobic006G121400 Sobic002G371200--Sobic003G442400 Sobic002G371200--Sobic001G025600 Sobic002G371200--Sobic003G367900 Sobic002G371200--Sobic006G079900
Octagon: transcription factors


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