Gene annotation
Transcriptome id Sobic.004G336600.1
Synonym ATPCNA2, PCNA2, Sb04g036440
Functional annotation PCNA - Putative DNA replicative polymerase clamp, expressed
UniProt C5XV51
Pfam PF04139
Panther DB PTHR11352
NCBI CDD KOG1636; DNA polymerase delta processivity factor (proliferating cell nuclear antigen)
KEGG Orthology K04802; proliferating cell nuclear antigen
Gene Ontology GO:0000077; DNA damage checkpoint GO:0006275regulation of DNA replication GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G29570 : proliferating cell nuclear antigen 2
RAP-DB (Rice) LOC_Os02g56130.1 : PCNA - Putative DNA replicative polymerase clamp, expressed
MaizeGDB (Corn) Zm00025a032882 , Zm00025a022521
Brachypodium KQK01239
Barley HORVU1Hr1G061760.2 , HORVU1Hr1G061760.1 , HORVU0Hr1G031140.1 , HORVU2Hr1G031110.2 , HORVU2Hr1G031110.1 , HORVU7Hr1G062710.1 , HORVU7Hr1G062690.1 , HORVU5Hr1G074040.1 , HORVU5Hr1G074040.2 , HORVU1Hr1G065140.2 , HORVU1Hr1G065140.1
Wheat TraesCS2B02G382000 , TraesCS2D02G361800 , TraesCS6A02G373400 , TraesCS6A02G373400 , TraesCS6D02G357600 , TraesCS6B02G411100 , TraesCS2A02G364000
Populus PNT19468


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cDNA sequences
Sobic.004G336600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G319200 expressed protein K11490: condensin-2 complex subunit H2
2 Sobic.009G012700 LSM domain containing protein, expressed K11096: SNRPD2, small nuclear ribonucleoprotein D2
3 Sobic.002G045100 LSM domain containing protein, expressed K11086: SNRPB, small nuclear ribonucleoprotein B and B'
4 Sobic.004G047500 down-regulated TF in developmental senescence(PubMedID : 27586543)@whirly transcription factor domain containing protein, expressed -
5 Sobic.001G169800 cyclin, putative, expressed K06627: cyclin-A
6 Sobic.006G134900 ribonucleoside-diphosphate reductase small chain, putative, expressed K10808: ribonucleoside-diphosphate reductase subunit M2
7 Sobic.007G183800 ankyrin repeat-containing protein, putative, expressed -
8 Sobic.001G505000 cyclin-dependent kinases regulatory subunit 1, putative, expressed K02219: cyclin-dependent kinase regulatory subunit CKS1
9 Sobic.006G140100 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
10 Sobic.002G303800 expressed protein -
11 Sobic.001G431700 expressed protein K18171: COX assembly mitochondrial protein 1
12 Sobic.002G054000 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
13 Sobic.004G079200 heat shock protein DnaJ, putative, expressed K09529: DnaJ homolog subfamily C member 9
14 Sobic.001G440900 LSM domain containing protein, expressed K11088: SNRPD3, small nuclear ribonucleoprotein D3
15 Sobic.008G018000 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17780: mitochondrial import inner membrane translocase subunit TIM8
16 Sobic.001G078600 CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
17 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
18 Sobic.003G442400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
19 Sobic.010G032700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase domain containing protein, expressed K11434: type I protein arginine methyltransferase
20 Sobic.001G528600 remorin family protein, putative, expressed -


Gene co-expression network
sample Sobic004G336600 Sobic004G336600 Sobic002G319200 Sobic002G319200 Sobic004G336600--Sobic002G319200 Sobic009G012700 Sobic009G012700 Sobic004G336600--Sobic009G012700 Sobic002G045100 Sobic002G045100 Sobic004G336600--Sobic002G045100 Sobic004G047500 Sobic004G047500 Sobic004G336600--Sobic004G047500 Sobic001G169800 Sobic001G169800 Sobic004G336600--Sobic001G169800 Sobic006G134900 Sobic006G134900 Sobic004G336600--Sobic006G134900 Sobic007G183800 Sobic007G183800 Sobic004G336600--Sobic007G183800 Sobic001G505000 Sobic001G505000 Sobic004G336600--Sobic001G505000 Sobic006G140100 Sobic006G140100 Sobic004G336600--Sobic006G140100 Sobic002G319200--Sobic002G045100 Sobic001G242800 Sobic001G242800 Sobic002G319200--Sobic001G242800 Sobic001G371100 Sobic001G371100 Sobic002G319200--Sobic001G371100 Sobic005G211200 Sobic005G211200 Sobic002G319200--Sobic005G211200 Sobic010G032700 Sobic010G032700 Sobic002G319200--Sobic010G032700 Sobic001G528600 Sobic001G528600 Sobic002G319200--Sobic001G528600 Sobic004G152200 Sobic004G152200 Sobic002G319200--Sobic004G152200 Sobic009G126500 Sobic009G126500 Sobic002G319200--Sobic009G126500 Sobic002G161700 Sobic002G161700 Sobic002G319200--Sobic002G161700 Sobic008G149450 Sobic008G149450 Sobic009G012700--Sobic008G149450 Sobic004G342400 Sobic004G342400 Sobic009G012700--Sobic004G342400 Sobic006G115000 Sobic006G115000 Sobic009G012700--Sobic006G115000 Sobic009G012700--Sobic002G045100 Sobic003G287300 Sobic003G287300 Sobic009G012700--Sobic003G287300 Sobic010G210000 Sobic010G210000 Sobic009G012700--Sobic010G210000 Sobic010G023900 Sobic010G023900 Sobic009G012700--Sobic010G023900 Sobic003G011100 Sobic003G011100 Sobic009G012700--Sobic003G011100 Sobic004G002350 Sobic004G002350 Sobic009G012700--Sobic004G002350 Sobic007G143000 Sobic007G143000 Sobic002G045100--Sobic007G143000 Sobic005G164700 Sobic005G164700 Sobic002G045100--Sobic005G164700 Sobic002G045100--Sobic009G012700 Sobic002G045100--Sobic002G319200 Sobic003G160900 Sobic003G160900 Sobic002G045100--Sobic003G160900 Sobic007G034400 Sobic007G034400 Sobic002G045100--Sobic007G034400 Sobic002G045100--Sobic004G002350 Sobic010G018000 Sobic010G018000 Sobic002G045100--Sobic010G018000 Sobic002G045100--Sobic001G371100 Sobic001G107300 Sobic001G107300 Sobic004G047500--Sobic001G107300 Sobic004G047500--Sobic001G371100 Sobic002G133000 Sobic002G133000 Sobic004G047500--Sobic002G133000 Sobic002G303800 Sobic002G303800 Sobic004G047500--Sobic002G303800 Sobic002G135100 Sobic002G135100 Sobic004G047500--Sobic002G135100 Sobic004G208100 Sobic004G208100 Sobic004G047500--Sobic004G208100 Sobic004G047500--Sobic004G336600 Sobic002G267600 Sobic002G267600 Sobic004G047500--Sobic002G267600 Sobic001G061800 Sobic001G061800 Sobic004G047500--Sobic001G061800 Sobic001G456500 Sobic001G456500 Sobic001G169800--Sobic001G456500 Sobic006G116500 Sobic006G116500 Sobic001G169800--Sobic006G116500 Sobic003G444300 Sobic003G444300 Sobic001G169800--Sobic003G444300 Sobic001G083300 Sobic001G083300 Sobic001G169800--Sobic001G083300 Sobic002G223900 Sobic002G223900 Sobic001G169800--Sobic002G223900 Sobic003G183700 Sobic003G183700 Sobic001G169800--Sobic003G183700 Sobic001G105800 Sobic001G105800 Sobic001G169800--Sobic001G105800 Sobic004G355500 Sobic004G355500 Sobic001G169800--Sobic004G355500 Sobic003G179500 Sobic003G179500 Sobic001G169800--Sobic003G179500 Sobic006G081800 Sobic006G081800 Sobic006G134900--Sobic006G081800 Sobic006G134900--Sobic001G169800 Sobic007G176800 Sobic007G176800 Sobic006G134900--Sobic007G176800 Sobic004G170500 Sobic004G170500 Sobic006G134900--Sobic004G170500 Sobic006G189200 Sobic006G189200 Sobic006G134900--Sobic006G189200 Sobic006G134900--Sobic006G116500 Sobic001G142000 Sobic001G142000 Sobic006G134900--Sobic001G142000 Sobic001G078600 Sobic001G078600 Sobic006G134900--Sobic001G078600 Sobic006G134900--Sobic001G105800 Sobic007G044400 Sobic007G044400 Sobic007G183800--Sobic007G044400 Sobic001G157800 Sobic001G157800 Sobic007G183800--Sobic001G157800 Sobic004G217450 Sobic004G217450 Sobic007G183800--Sobic004G217450 Sobic004G344500 Sobic004G344500 Sobic007G183800--Sobic004G344500 Sobic003G084300 Sobic003G084300 Sobic007G183800--Sobic003G084300 Sobic009G182300 Sobic009G182300 Sobic007G183800--Sobic009G182300 Sobic006G271300 Sobic006G271300 Sobic007G183800--Sobic006G271300 Sobic010G265900 Sobic010G265900 Sobic007G183800--Sobic010G265900 Sobic006G083000 Sobic006G083000 Sobic007G183800--Sobic006G083000 Sobic009G165500 Sobic009G165500 Sobic001G505000--Sobic009G165500 Sobic001G505000--Sobic001G107300 Sobic006G149200 Sobic006G149200 Sobic001G505000--Sobic006G149200 Sobic002G289800 Sobic002G289800 Sobic001G505000--Sobic002G289800 Sobic010G222100 Sobic010G222100 Sobic001G505000--Sobic010G222100 Sobic001G505000--Sobic006G115000 Sobic006G013900 Sobic006G013900 Sobic001G505000--Sobic006G013900 Sobic001G429000 Sobic001G429000 Sobic001G505000--Sobic001G429000 Sobic003G174700 Sobic003G174700 Sobic001G505000--Sobic003G174700 Sobic007G152900 Sobic007G152900 Sobic006G140100--Sobic007G152900 Sobic010G054600 Sobic010G054600 Sobic006G140100--Sobic010G054600 Sobic006G140100--Sobic006G116500 Sobic001G070300 Sobic001G070300 Sobic006G140100--Sobic001G070300 Sobic004G197400 Sobic004G197400 Sobic006G140100--Sobic004G197400 Sobic006G140100--Sobic004G355500 Sobic006G140100--Sobic001G142000 Sobic009G214100 Sobic009G214100 Sobic006G140100--Sobic009G214100 Sobic002G280700 Sobic002G280700 Sobic006G140100--Sobic002G280700
Octagon: transcription factors


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