Gene annotation
Transcriptome id Sobic.006G140100.4,Sobic.006G140100.3
Synonym Sb06g021920
Functional annotation TMS membrane protein/tumour differentially expressed protein, putative, expressed
UniProt C5YBV5 , A0A1Z5RDT0
Pfam PF03348
Panther DB PTHR10383 PTHR10383:SF23
NCBI CDD KOG2592; Tumor differentially expressed (TDE) protein
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT2G33205 : Serinc-domain containing serine and sphingolipid biosynthesis protein
RAP-DB (Rice) LOC_Os04g42720.1 : TMS membrane protein/tumour differentially expressed protein, putative, expressed
MaizeGDB (Corn) Zm00025a010751
Brachypodium KQJ83458 , KQJ83459 , KQJ83455 , KQJ83456 , KQJ83457 , KQJ83460
Barley HORVU2Hr1G087600.28 , HORVU2Hr1G087600.29 , HORVU2Hr1G087600.26 , HORVU2Hr1G087600.24 , HORVU2Hr1G087600.25 , HORVU2Hr1G087600.22 , HORVU2Hr1G087600.23 , HORVU2Hr1G087600.20 , HORVU2Hr1G087600.21 , HORVU2Hr1G087600.17 , HORVU2Hr1G087600.16 , HORVU2Hr1G087600.14 , HORVU2Hr1G087600.13 , HORVU2Hr1G087600.12 , HORVU2Hr1G087600.11 , HORVU2Hr1G087600.10 , HORVU2Hr1G087600.31 , HORVU2Hr1G087600.30 , HORVU2Hr1G087600.32 , HORVU2Hr1G087600.19 , HORVU2Hr1G087600.9 , HORVU2Hr1G087600.8 , HORVU2Hr1G087600.7 , HORVU2Hr1G087600.6 , HORVU2Hr1G087600.5 , HORVU2Hr1G087600.4 , HORVU2Hr1G087600.3 , HORVU2Hr1G087600.2 , HORVU2Hr1G087600.1
Wheat TraesCS2A02G360500 , TraesCS2D02G359200 , TraesCS2B02G379600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G152900 POLE2A - Putative DNA polymerase epsilon complex subunit, expressed K02325: DNA polymerase epsilon subunit 2
2 Sobic.010G054600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribonucleoside-diphosphate reductase large subunit, putative, expressed K10807: ribonucleoside-diphosphate reductase subunit M1
3 Sobic.006G116500 expressed protein -
4 Sobic.001G070300 expressed protein -
5 Sobic.004G197400 expressed protein K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1
6 Sobic.004G355500 RPA2A - Putative single-stranded DNA binding complex subunit 2, expressed K10739: RFA2, replication factor A2
7 Sobic.001G142000 deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed K01520: dut, dUTP pyrophosphatase
8 Sobic.009G214100 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
9 Sobic.002G280700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
10 Sobic.010G274000 cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
11 Sobic.002G258300 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
13 Sobic.001G078600 CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
14 Sobic.001G169800 cyclin, putative, expressed K06627: cyclin-A
15 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
16 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
17 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
18 Sobic.001G528600 remorin family protein, putative, expressed -
19 Sobic.004G119700 WD repeat-containing protein, putative, expressed K03363: cell division cycle 20, cofactor of APC complex
20 Sobic.003G345200 protein kinase family protein, putative, expressed -


Gene co-expression network
sample Sobic006G140100 Sobic006G140100 Sobic007G152900 Sobic007G152900 Sobic006G140100--Sobic007G152900 Sobic010G054600 Sobic010G054600 Sobic006G140100--Sobic010G054600 Sobic006G116500 Sobic006G116500 Sobic006G140100--Sobic006G116500 Sobic001G070300 Sobic001G070300 Sobic006G140100--Sobic001G070300 Sobic004G197400 Sobic004G197400 Sobic006G140100--Sobic004G197400 Sobic004G355500 Sobic004G355500 Sobic006G140100--Sobic004G355500 Sobic001G142000 Sobic001G142000 Sobic006G140100--Sobic001G142000 Sobic009G214100 Sobic009G214100 Sobic006G140100--Sobic009G214100 Sobic002G280700 Sobic002G280700 Sobic006G140100--Sobic002G280700 Sobic007G152900--Sobic004G355500 Sobic010G103700 Sobic010G103700 Sobic007G152900--Sobic010G103700 Sobic007G152900--Sobic006G116500 Sobic009G088200 Sobic009G088200 Sobic007G152900--Sobic009G088200 Sobic007G152900--Sobic001G070300 Sobic010G274000 Sobic010G274000 Sobic007G152900--Sobic010G274000 Sobic007G152900--Sobic006G140100 Sobic007G152900--Sobic002G280700 Sobic001G103000 Sobic001G103000 Sobic007G152900--Sobic001G103000 Sobic004G331600 Sobic004G331600 Sobic010G054600--Sobic004G331600 Sobic010G054600--Sobic001G142000 Sobic008G129200 Sobic008G129200 Sobic010G054600--Sobic008G129200 Sobic004G119700 Sobic004G119700 Sobic010G054600--Sobic004G119700 Sobic001G456500 Sobic001G456500 Sobic010G054600--Sobic001G456500 Sobic003G201000 Sobic003G201000 Sobic010G054600--Sobic003G201000 Sobic003G361200 Sobic003G361200 Sobic010G054600--Sobic003G361200 Sobic010G147700 Sobic010G147700 Sobic010G054600--Sobic010G147700 Sobic009G087000 Sobic009G087000 Sobic010G054600--Sobic009G087000 Sobic006G116500--Sobic001G456500 Sobic006G116500--Sobic004G355500 Sobic001G169800 Sobic001G169800 Sobic006G116500--Sobic001G169800 Sobic006G116500--Sobic001G070300 Sobic003G179500 Sobic003G179500 Sobic006G116500--Sobic003G179500 Sobic006G116500--Sobic008G129200 Sobic002G223900 Sobic002G223900 Sobic006G116500--Sobic002G223900 Sobic006G116500--Sobic004G331600 Sobic004G047100 Sobic004G047100 Sobic006G116500--Sobic004G047100 Sobic001G070300--Sobic010G274000 Sobic007G100600 Sobic007G100600 Sobic001G070300--Sobic007G100600 Sobic001G070300--Sobic006G116500 Sobic002G191000 Sobic002G191000 Sobic001G070300--Sobic002G191000 Sobic009G181500 Sobic009G181500 Sobic001G070300--Sobic009G181500 Sobic001G070300--Sobic004G197400 Sobic005G144600 Sobic005G144600 Sobic001G070300--Sobic005G144600 Sobic001G070300--Sobic001G142000 Sobic001G070300--Sobic004G047100 Sobic003G294500 Sobic003G294500 Sobic004G197400--Sobic003G294500 Sobic004G197400--Sobic005G144600 Sobic004G197400--Sobic001G456500 Sobic004G197400--Sobic006G116500 Sobic004G197400--Sobic010G274000 Sobic004G197400--Sobic001G070300 Sobic001G078600 Sobic001G078600 Sobic004G197400--Sobic001G078600 Sobic004G197400--Sobic004G355500 Sobic004G197400--Sobic010G147700 Sobic004G355500--Sobic006G116500 Sobic004G355500--Sobic001G456500 Sobic004G355500--Sobic007G152900 Sobic004G355500--Sobic010G103700 Sobic004G355500--Sobic001G169800 Sobic004G355500--Sobic004G197400 Sobic004G355500--Sobic009G088200 Sobic004G355500--Sobic001G103000 Sobic004G355500--Sobic008G129200 Sobic001G142000--Sobic001G456500 Sobic001G142000--Sobic010G054600 Sobic001G142000--Sobic004G331600 Sobic003G444300 Sobic003G444300 Sobic001G142000--Sobic003G444300 Sobic001G142000--Sobic008G129200 Sobic001G083300 Sobic001G083300 Sobic001G142000--Sobic001G083300 Sobic001G142000--Sobic006G116500 Sobic001G013400 Sobic001G013400 Sobic001G142000--Sobic001G013400 Sobic004G075900 Sobic004G075900 Sobic001G142000--Sobic004G075900 Sobic009G214100--Sobic003G179500 Sobic007G139500 Sobic007G139500 Sobic009G214100--Sobic007G139500 Sobic009G214100--Sobic010G103700 Sobic002G303800 Sobic002G303800 Sobic009G214100--Sobic002G303800 Sobic009G214100--Sobic005G144600 Sobic010G051100 Sobic010G051100 Sobic009G214100--Sobic010G051100 Sobic009G214100--Sobic003G201000 Sobic006G120600 Sobic006G120600 Sobic009G214100--Sobic006G120600 Sobic008G127550 Sobic008G127550 Sobic009G214100--Sobic008G127550 Sobic002G280700--Sobic009G088200 Sobic001G528600 Sobic001G528600 Sobic002G280700--Sobic001G528600 Sobic002G280700--Sobic007G152900 Sobic010G032700 Sobic010G032700 Sobic002G280700--Sobic010G032700 Sobic003G396600 Sobic003G396600 Sobic002G280700--Sobic003G396600 Sobic001G371100 Sobic001G371100 Sobic002G280700--Sobic001G371100 Sobic003G294100 Sobic003G294100 Sobic002G280700--Sobic003G294100 Sobic005G164700 Sobic005G164700 Sobic002G280700--Sobic005G164700 Sobic001G397000 Sobic001G397000 Sobic002G280700--Sobic001G397000
Octagon: transcription factors


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