Gene annotation
Transcriptome id Sobic.002G280700.1
Synonym Sb02g031330, MSI3, NFC3
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
WD domain, G-beta repeat domain containing protein, expressed
UniProt C5X6W6
Pfam PF00400 PF12265
Panther DB PTHR22850 PTHR22850:SF82
NCBI CDD KOG0264; Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1
KEGG Orthology K10752; RBBP4, HAT2, CAF1, histone-binding protein RBBP4
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G35050 : Transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os09g36900.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049313 , Zm00025a014467
Brachypodium KQJ91252
Barley HORVU5Hr1G084160.1 , HORVU5Hr1G084160.2 , HORVU5Hr1G084160.3 , HORVU5Hr1G084160.4 , HORVU5Hr1G084160.5 , HORVU5Hr1G084160.6 , HORVU5Hr1G084160.7 , HORVU2Hr1G092350.2 , HORVU2Hr1G092350.1
Wheat TraesCS5A02G331900 , TraesCS5D02G337800 , TraesCS5B02G332200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G088200 -(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
2 Sobic.001G528600 remorin family protein, putative, expressed -
3 Sobic.007G152900 POLE2A - Putative DNA polymerase epsilon complex subunit, expressed K02325: DNA polymerase epsilon subunit 2
4 Sobic.010G032700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase domain containing protein, expressed K11434: type I protein arginine methyltransferase
5 Sobic.003G396600 down-regulated TF in developmental senescence(PubMedID : 27586543)@ZOS5-12 - C2H2 zinc finger protein, expressed -
6 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
7 Sobic.003G294100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydropyrimidinase, putative, expressed K01465: URA4, dihydroorotase
8 Sobic.005G164700 h/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed K11128: GAR1, H/ACA ribonucleoprotein complex subunit 1
9 Sobic.001G397000 argininosuccinate lyase, putative, expressed K01755: argH, argininosuccinate lyase
10 Sobic.006G140100 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
11 Sobic.004G286700 GDSL-like lipase/acylhydrolase, putative, expressed -
12 Sobic.001G228200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
13 Sobic.009G059500 solute carrier family 35 member E3, putative, expressed K15285: solute carrier family 35, member E3
14 Sobic.010G144900 fiber protein Fb34, putative, expressed -
15 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
16 Sobic.004G355500 RPA2A - Putative single-stranded DNA binding complex subunit 2, expressed K10739: RFA2, replication factor A2
17 Sobic.007G094400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fiber protein Fb34, putative, expressed -
18 Sobic.001G107200 tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
19 Sobic.001G078600 CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
20 Sobic.003G084300 mediator of RNA polymerase II transcription subunit 22, putative, expressed K15139: mediator of RNA polymerase II transcription subunit 22


Gene co-expression network
sample Sobic002G280700 Sobic002G280700 Sobic009G088200 Sobic009G088200 Sobic002G280700--Sobic009G088200 Sobic001G528600 Sobic001G528600 Sobic002G280700--Sobic001G528600 Sobic007G152900 Sobic007G152900 Sobic002G280700--Sobic007G152900 Sobic010G032700 Sobic010G032700 Sobic002G280700--Sobic010G032700 Sobic003G396600 Sobic003G396600 Sobic002G280700--Sobic003G396600 Sobic001G371100 Sobic001G371100 Sobic002G280700--Sobic001G371100 Sobic003G294100 Sobic003G294100 Sobic002G280700--Sobic003G294100 Sobic005G164700 Sobic005G164700 Sobic002G280700--Sobic005G164700 Sobic001G397000 Sobic001G397000 Sobic002G280700--Sobic001G397000 Sobic004G355500 Sobic004G355500 Sobic009G088200--Sobic004G355500 Sobic009G088200--Sobic002G280700 Sobic009G088200--Sobic007G152900 Sobic009G088200--Sobic003G396600 Sobic007G079600 Sobic007G079600 Sobic009G088200--Sobic007G079600 Sobic001G078600 Sobic001G078600 Sobic009G088200--Sobic001G078600 Sobic001G103000 Sobic001G103000 Sobic009G088200--Sobic001G103000 Sobic009G088200--Sobic010G032700 Sobic005G047100 Sobic005G047100 Sobic009G088200--Sobic005G047100 Sobic001G528600--Sobic001G078600 Sobic001G107200 Sobic001G107200 Sobic001G528600--Sobic001G107200 Sobic001G528600--Sobic002G280700 Sobic004G152200 Sobic004G152200 Sobic001G528600--Sobic004G152200 Sobic006G191700 Sobic006G191700 Sobic001G528600--Sobic006G191700 Sobic010G274000 Sobic010G274000 Sobic001G528600--Sobic010G274000 Sobic004G331200 Sobic004G331200 Sobic001G528600--Sobic004G331200 Sobic001G528600--Sobic005G047100 Sobic006G102900 Sobic006G102900 Sobic001G528600--Sobic006G102900 Sobic007G152900--Sobic004G355500 Sobic010G103700 Sobic010G103700 Sobic007G152900--Sobic010G103700 Sobic006G116500 Sobic006G116500 Sobic007G152900--Sobic006G116500 Sobic007G152900--Sobic009G088200 Sobic001G070300 Sobic001G070300 Sobic007G152900--Sobic001G070300 Sobic007G152900--Sobic010G274000 Sobic006G140100 Sobic006G140100 Sobic007G152900--Sobic006G140100 Sobic007G152900--Sobic002G280700 Sobic007G152900--Sobic001G103000 Sobic010G032700--Sobic001G371100 Sobic009G119700 Sobic009G119700 Sobic010G032700--Sobic009G119700 Sobic010G032700--Sobic002G280700 Sobic010G032700--Sobic009G088200 Sobic004G343600 Sobic004G343600 Sobic010G032700--Sobic004G343600 Sobic002G054000 Sobic002G054000 Sobic010G032700--Sobic002G054000 Sobic002G319200 Sobic002G319200 Sobic010G032700--Sobic002G319200 Sobic002G045100 Sobic002G045100 Sobic010G032700--Sobic002G045100 Sobic001G228200 Sobic001G228200 Sobic010G032700--Sobic001G228200 Sobic006G200000 Sobic006G200000 Sobic003G396600--Sobic006G200000 Sobic004G349700 Sobic004G349700 Sobic003G396600--Sobic004G349700 Sobic003G011100 Sobic003G011100 Sobic003G396600--Sobic003G011100 Sobic005G080900 Sobic005G080900 Sobic003G396600--Sobic005G080900 Sobic010G115200 Sobic010G115200 Sobic003G396600--Sobic010G115200 Sobic003G396600--Sobic009G088200 Sobic002G101000 Sobic002G101000 Sobic003G396600--Sobic002G101000 Sobic010G069400 Sobic010G069400 Sobic003G396600--Sobic010G069400 Sobic003G396600--Sobic001G397000 Sobic001G371100--Sobic010G032700 Sobic001G081900 Sobic001G081900 Sobic001G371100--Sobic001G081900 Sobic001G371100--Sobic001G397000 Sobic001G530800 Sobic001G530800 Sobic001G371100--Sobic001G530800 Sobic006G251600 Sobic006G251600 Sobic001G371100--Sobic006G251600 Sobic004G047200 Sobic004G047200 Sobic001G371100--Sobic004G047200 Sobic008G083400 Sobic008G083400 Sobic001G371100--Sobic008G083400 Sobic004G082700 Sobic004G082700 Sobic001G371100--Sobic004G082700 Sobic001G371100--Sobic001G228200 Sobic009G059500 Sobic009G059500 Sobic003G294100--Sobic009G059500 Sobic008G168100 Sobic008G168100 Sobic003G294100--Sobic008G168100 Sobic003G294100--Sobic002G280700 Sobic001G157800 Sobic001G157800 Sobic003G294100--Sobic001G157800 Sobic009G250100 Sobic009G250100 Sobic003G294100--Sobic009G250100 Sobic002G186900 Sobic002G186900 Sobic003G294100--Sobic002G186900 Sobic002G271300 Sobic002G271300 Sobic003G294100--Sobic002G271300 Sobic008G126600 Sobic008G126600 Sobic003G294100--Sobic008G126600 Sobic003G294100--Sobic007G152900 Sobic007G034400 Sobic007G034400 Sobic005G164700--Sobic007G034400 Sobic002G115000 Sobic002G115000 Sobic005G164700--Sobic002G115000 Sobic006G201500 Sobic006G201500 Sobic005G164700--Sobic006G201500 Sobic005G164700--Sobic002G045100 Sobic008G135000 Sobic008G135000 Sobic005G164700--Sobic008G135000 Sobic001G085400 Sobic001G085400 Sobic005G164700--Sobic001G085400 Sobic008G021100 Sobic008G021100 Sobic005G164700--Sobic008G021100 Sobic001G058900 Sobic001G058900 Sobic005G164700--Sobic001G058900 Sobic006G156000 Sobic006G156000 Sobic005G164700--Sobic006G156000 Sobic001G397000--Sobic001G371100 Sobic003G300900 Sobic003G300900 Sobic001G397000--Sobic003G300900 Sobic001G397000--Sobic003G396600 Sobic007G134800 Sobic007G134800 Sobic001G397000--Sobic007G134800 Sobic010G144900 Sobic010G144900 Sobic001G397000--Sobic010G144900 Sobic008G100700 Sobic008G100700 Sobic001G397000--Sobic008G100700 Sobic001G397000--Sobic001G081900 Sobic001G397000--Sobic002G101000 Sobic001G397000--Sobic001G228200
Octagon: transcription factors


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