Gene annotation
Transcriptome id Sobic.003G294100.2,Sobic.003G294100.1
Synonym Sb03g034450, PYR4, DHOASE
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
dihydropyrimidinase, putative, expressed
UniProt A0A1B6Q615
Pfam PF01979
Panther DB PTHR11647 PTHR11647:SF59
NCBI CDD KOG2902; Dihydroorotase
KEGG Orthology K01465; URA4, dihydroorotase
Gene Ontology GO:0016787; hydrolase activity GO:0004151dihydroorotase activity


Orthologs (automatic annotation)
TAIR AT4G22930 : pyrimidin 4
RAP-DB (Rice) LOC_Os01g54370.1 : dihydropyrimidinase, putative, expressed
MaizeGDB (Corn) Zm00025a027558
Brachypodium PNT72845 , KQK09712 , KQK09713
Barley HORVU3Hr1G071270.4 , HORVU3Hr1G071270.2 , HORVU3Hr1G071270.3 , HORVU3Hr1G071270.1
Wheat TraesCS3B02G307600 , TraesCS3A02G273900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G059500 solute carrier family 35 member E3, putative, expressed K15285: solute carrier family 35, member E3
2 Sobic.008G168100 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
3 Sobic.002G280700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
4 Sobic.001G157800 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
5 Sobic.009G250100 extra-large G-protein-related, putative, expressed -
6 Sobic.002G186900 enolase, putative, expressed K01689: ENO, enolase
7 Sobic.002G271300 NC domain-containing protein, putative, expressed -
8 Sobic.008G126600 calmodulin binding protein, putative, expressed -
9 Sobic.007G152900 POLE2A - Putative DNA polymerase epsilon complex subunit, expressed K02325: DNA polymerase epsilon subunit 2
10 Sobic.003G345700 OsSCP5 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
11 Sobic.003G236600 expressed protein -
12 Sobic.008G157000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA31 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
13 Sobic.003G082800 transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
14 Sobic.003G396600 down-regulated TF in developmental senescence(PubMedID : 27586543)@ZOS5-12 - C2H2 zinc finger protein, expressed -
15 Sobic.003G084300 mediator of RNA polymerase II transcription subunit 22, putative, expressed K15139: mediator of RNA polymerase II transcription subunit 22
16 Sobic.004G128500 - -
17 Sobic.010G218300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA binding protein, putative, expressed -
18 Sobic.002G357800 SHR, putative, expressed -
19 Sobic.002G101400 erythronate-4-phosphate dehydrogenase domain containing protein, expressed -
20 Sobic.010G138300 DUF617 domain containing protein, expressed -


Gene co-expression network
sample Sobic003G294100 Sobic003G294100 Sobic009G059500 Sobic009G059500 Sobic003G294100--Sobic009G059500 Sobic008G168100 Sobic008G168100 Sobic003G294100--Sobic008G168100 Sobic002G280700 Sobic002G280700 Sobic003G294100--Sobic002G280700 Sobic001G157800 Sobic001G157800 Sobic003G294100--Sobic001G157800 Sobic009G250100 Sobic009G250100 Sobic003G294100--Sobic009G250100 Sobic002G186900 Sobic002G186900 Sobic003G294100--Sobic002G186900 Sobic002G271300 Sobic002G271300 Sobic003G294100--Sobic002G271300 Sobic008G126600 Sobic008G126600 Sobic003G294100--Sobic008G126600 Sobic007G152900 Sobic007G152900 Sobic003G294100--Sobic007G152900 Sobic009G059500--Sobic008G168100 Sobic009G059500--Sobic002G271300 Sobic009G059500--Sobic002G186900 Sobic009G059500--Sobic008G126600 Sobic009G059500--Sobic003G294100 Sobic008G141200 Sobic008G141200 Sobic009G059500--Sobic008G141200 Sobic001G228200 Sobic001G228200 Sobic009G059500--Sobic001G228200 Sobic004G054000 Sobic004G054000 Sobic009G059500--Sobic004G054000 Sobic007G044400 Sobic007G044400 Sobic009G059500--Sobic007G044400 Sobic008G168100--Sobic009G059500 Sobic008G168100--Sobic001G228200 Sobic008G168100--Sobic004G054000 Sobic008G168100--Sobic003G294100 Sobic008G168100--Sobic002G271300 Sobic008G168100--Sobic009G250100 Sobic008G168100--Sobic008G126600 Sobic002G094600 Sobic002G094600 Sobic008G168100--Sobic002G094600 Sobic008G168100--Sobic007G152900 Sobic009G088200 Sobic009G088200 Sobic002G280700--Sobic009G088200 Sobic001G528600 Sobic001G528600 Sobic002G280700--Sobic001G528600 Sobic002G280700--Sobic007G152900 Sobic010G032700 Sobic010G032700 Sobic002G280700--Sobic010G032700 Sobic003G396600 Sobic003G396600 Sobic002G280700--Sobic003G396600 Sobic001G371100 Sobic001G371100 Sobic002G280700--Sobic001G371100 Sobic002G280700--Sobic003G294100 Sobic005G164700 Sobic005G164700 Sobic002G280700--Sobic005G164700 Sobic001G397000 Sobic001G397000 Sobic002G280700--Sobic001G397000 Sobic003G084300 Sobic003G084300 Sobic001G157800--Sobic003G084300 Sobic006G200000 Sobic006G200000 Sobic001G157800--Sobic006G200000 Sobic001G157800--Sobic003G396600 Sobic002G385400 Sobic002G385400 Sobic001G157800--Sobic002G385400 Sobic003G096000 Sobic003G096000 Sobic001G157800--Sobic003G096000 Sobic001G157800--Sobic003G294100 Sobic010G265900 Sobic010G265900 Sobic001G157800--Sobic010G265900 Sobic002G361700 Sobic002G361700 Sobic001G157800--Sobic002G361700 Sobic001G157800--Sobic007G044400 Sobic001G163800 Sobic001G163800 Sobic009G250100--Sobic001G163800 Sobic009G250100--Sobic008G168100 Sobic009G250100--Sobic004G054000 Sobic009G250100--Sobic009G059500 Sobic010G131400 Sobic010G131400 Sobic009G250100--Sobic010G131400 Sobic008G062900 Sobic008G062900 Sobic009G250100--Sobic008G062900 Sobic005G022500 Sobic005G022500 Sobic009G250100--Sobic005G022500 Sobic009G250100--Sobic003G294100 Sobic004G038200 Sobic004G038200 Sobic009G250100--Sobic004G038200 Sobic002G186900--Sobic009G059500 Sobic002G186900--Sobic002G271300 Sobic002G186900--Sobic003G096000 Sobic010G089500 Sobic010G089500 Sobic002G186900--Sobic010G089500 Sobic010G101600 Sobic010G101600 Sobic002G186900--Sobic010G101600 Sobic004G056400 Sobic004G056400 Sobic002G186900--Sobic004G056400 Sobic002G186900--Sobic001G228200 Sobic002G186900--Sobic006G200000 Sobic002G186900--Sobic007G044400 Sobic002G271300--Sobic009G059500 Sobic002G271300--Sobic002G186900 Sobic002G271300--Sobic005G022500 Sobic002G271300--Sobic010G131400 Sobic002G271300--Sobic008G168100 Sobic002G254900 Sobic002G254900 Sobic002G271300--Sobic002G254900 Sobic003G087700 Sobic003G087700 Sobic002G271300--Sobic003G087700 Sobic002G271300--Sobic008G062900 Sobic010G114000 Sobic010G114000 Sobic002G271300--Sobic010G114000 Sobic008G126600--Sobic009G059500 Sobic008G126600--Sobic008G168100 Sobic008G126600--Sobic003G294100 Sobic003G045900 Sobic003G045900 Sobic008G126600--Sobic003G045900 Sobic003G052900 Sobic003G052900 Sobic008G126600--Sobic003G052900 Sobic008G126600--Sobic009G250100 Sobic001G337400 Sobic001G337400 Sobic008G126600--Sobic001G337400 Sobic008G126600--Sobic002G271300 Sobic001G460400 Sobic001G460400 Sobic008G126600--Sobic001G460400 Sobic004G355500 Sobic004G355500 Sobic007G152900--Sobic004G355500 Sobic010G103700 Sobic010G103700 Sobic007G152900--Sobic010G103700 Sobic006G116500 Sobic006G116500 Sobic007G152900--Sobic006G116500 Sobic007G152900--Sobic009G088200 Sobic001G070300 Sobic001G070300 Sobic007G152900--Sobic001G070300 Sobic010G274000 Sobic010G274000 Sobic007G152900--Sobic010G274000 Sobic006G140100 Sobic006G140100 Sobic007G152900--Sobic006G140100 Sobic007G152900--Sobic002G280700 Sobic001G103000 Sobic001G103000 Sobic007G152900--Sobic001G103000
Octagon: transcription factors


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