Gene annotation
Transcriptome id Sobic.003G082800.1,Sobic.003G082800.2,Sobic.003G082800.4,Sobic.003G082800.3
Synonym HCT, Sb03g006960
Functional annotation transferase family protein, putative, expressed
UniProt C5XQS9 , A0A1W0VW97
Pfam PF02458
Panther DB PTHR31642 PTHR31642:SF16
NCBI CDD -
KEGG Orthology K13065; E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups


Orthologs (automatic annotation)
TAIR AT5G48930 : hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
RAP-DB (Rice) LOC_Os08g43040.1,LOC_Os08g43040.2 : transferase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a023571 , Zm00025a023574 , Zm00025a023575
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G506600 exostosin family domain containing protein, expressed -
2 Sobic.001G503000 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
3 Sobic.007G073000 - -
4 Sobic.005G177400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
5 Sobic.003G322100 polyphenol oxidase, putative, expressed K00422: polyphenol oxidase
6 Sobic.010G096700 leaf senescence related protein, putative, expressed -
7 Sobic.004G322000 hypro1, putative, expressed -
8 Sobic.003G140200 peroxidase precursor, putative, expressed K00430: peroxidase
9 Sobic.006G085700 OsPDIL1-2 protein disulfide isomerase PDIL1-2, expressed K09580: PDIA1, protein disulfide-isomerase A1
10 Sobic.001G002800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
11 Sobic.001G360500 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.003G215300 pleiotropic drug resistance protein, putative, expressed -
13 Sobic.005G182800 NB-ARC domain containing protein, expressed -
14 Sobic.005G069500 OsWAK92 - OsWAK receptor-like protein kinase, expressed -
15 Sobic.006G205500 glycosyl hydrolases family 16, putative, expressed -
16 Sobic.008G035800 glycosyltransferase, putative, expressed K08238: xyloglucan 6-xylosyltransferase
17 Sobic.006G209000 Protein transferase (Os)(PubMedID : 27208977)@transferase family domain containing protein, expressed -
18 Sobic.007G154100 aspartic proteinase nepenthesin precursor, putative, expressed -
19 Sobic.008G138900 MLA12, putative, expressed -
20 Sobic.002G254900 membrane protein, putative, expressed -


Gene co-expression network
sample Sobic003G082800 Sobic003G082800 Sobic001G506600 Sobic001G506600 Sobic003G082800--Sobic001G506600 Sobic001G503000 Sobic001G503000 Sobic003G082800--Sobic001G503000 Sobic007G073000 Sobic007G073000 Sobic003G082800--Sobic007G073000 Sobic005G177400 Sobic005G177400 Sobic003G082800--Sobic005G177400 Sobic003G322100 Sobic003G322100 Sobic003G082800--Sobic003G322100 Sobic010G096700 Sobic010G096700 Sobic003G082800--Sobic010G096700 Sobic004G322000 Sobic004G322000 Sobic003G082800--Sobic004G322000 Sobic003G140200 Sobic003G140200 Sobic003G082800--Sobic003G140200 Sobic006G085700 Sobic006G085700 Sobic003G082800--Sobic006G085700 Sobic001G506600--Sobic010G096700 Sobic001G506600--Sobic001G503000 Sobic005G104200 Sobic005G104200 Sobic001G506600--Sobic005G104200 Sobic002G029600 Sobic002G029600 Sobic001G506600--Sobic002G029600 Sobic002G411000 Sobic002G411000 Sobic001G506600--Sobic002G411000 Sobic002G019100 Sobic002G019100 Sobic001G506600--Sobic002G019100 Sobic001G506600--Sobic004G322000 Sobic006G209000 Sobic006G209000 Sobic001G506600--Sobic006G209000 Sobic003G215300 Sobic003G215300 Sobic001G506600--Sobic003G215300 Sobic001G503000--Sobic001G506600 Sobic001G503000--Sobic010G096700 Sobic005G115300 Sobic005G115300 Sobic001G503000--Sobic005G115300 Sobic001G503000--Sobic003G215300 Sobic001G503000--Sobic005G104200 Sobic001G503000--Sobic006G209000 Sobic008G138900 Sobic008G138900 Sobic001G503000--Sobic008G138900 Sobic010G082000 Sobic010G082000 Sobic001G503000--Sobic010G082000 Sobic001G503000--Sobic004G322000 Sobic006G092700 Sobic006G092700 Sobic007G073000--Sobic006G092700 Sobic007G073000--Sobic003G322100 Sobic007G073000--Sobic003G215300 Sobic002G146000 Sobic002G146000 Sobic007G073000--Sobic002G146000 Sobic006G135300 Sobic006G135300 Sobic007G073000--Sobic006G135300 Sobic002G195600 Sobic002G195600 Sobic007G073000--Sobic002G195600 Sobic007G073000--Sobic010G082000 Sobic007G090472 Sobic007G090472 Sobic007G073000--Sobic007G090472 Sobic003G240400 Sobic003G240400 Sobic007G073000--Sobic003G240400 Sobic005G177400--Sobic003G322100 Sobic005G177400--Sobic007G073000 Sobic005G177400--Sobic001G503000 Sobic004G193500 Sobic004G193500 Sobic005G177400--Sobic004G193500 Sobic001G274400 Sobic001G274400 Sobic005G177400--Sobic001G274400 Sobic005G177400--Sobic010G082000 Sobic001G360500 Sobic001G360500 Sobic005G177400--Sobic001G360500 Sobic005G177400--Sobic010G096700 Sobic005G177400--Sobic006G092700 Sobic003G322100--Sobic007G073000 Sobic010G152400 Sobic010G152400 Sobic003G322100--Sobic010G152400 Sobic003G322100--Sobic010G082000 Sobic003G322100--Sobic005G177400 Sobic003G322100--Sobic006G092700 Sobic003G322100--Sobic006G135300 Sobic003G322100--Sobic003G240400 Sobic003G322100--Sobic003G215300 Sobic003G322100--Sobic004G322000 Sobic010G096700--Sobic001G506600 Sobic010G096700--Sobic001G503000 Sobic010G096700--Sobic006G209000 Sobic010G096700--Sobic004G322000 Sobic010G096700--Sobic003G215300 Sobic010G096700--Sobic005G104200 Sobic005G066300 Sobic005G066300 Sobic010G096700--Sobic005G066300 Sobic010G096700--Sobic001G274400 Sobic010G096700--Sobic005G115300 Sobic007G090600 Sobic007G090600 Sobic004G322000--Sobic007G090600 Sobic004G322000--Sobic003G215300 Sobic006G031100 Sobic006G031100 Sobic004G322000--Sobic006G031100 Sobic004G322000--Sobic003G140200 Sobic003G282300 Sobic003G282300 Sobic004G322000--Sobic003G282300 Sobic004G322000--Sobic003G240400 Sobic008G035800 Sobic008G035800 Sobic004G322000--Sobic008G035800 Sobic004G322000--Sobic010G082000 Sobic004G014600 Sobic004G014600 Sobic004G322000--Sobic004G014600 Sobic003G140200--Sobic003G282300 Sobic003G140200--Sobic004G322000 Sobic003G140200--Sobic007G090600 Sobic003G140200--Sobic006G031100 Sobic003G140200--Sobic006G085700 Sobic003G140200--Sobic008G035800 Sobic008G077900 Sobic008G077900 Sobic003G140200--Sobic008G077900 Sobic001G263300 Sobic001G263300 Sobic003G140200--Sobic001G263300 Sobic003G140200--Sobic003G215300 Sobic006G085700--Sobic003G282300 Sobic006G085700--Sobic006G031100 Sobic006G085700--Sobic007G090600 Sobic006G085700--Sobic002G146000 Sobic006G085700--Sobic004G014600 Sobic006G085700--Sobic003G140200 Sobic003G441800 Sobic003G441800 Sobic006G085700--Sobic003G441800 Sobic005G182800 Sobic005G182800 Sobic006G085700--Sobic005G182800 Sobic010G152500 Sobic010G152500 Sobic006G085700--Sobic010G152500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.