Gene annotation
Transcriptome id Sobic.003G084300.3
Synonym Sb03g007110
Functional annotation mediator of RNA polymerase II transcription subunit 22, putative, expressed
UniProt C5XQU2
Pfam PF06179
Panther DB PTHR12434
NCBI CDD KOG3304; Surfeit family protein 5
KEGG Orthology K15139; mediator of RNA polymerase II transcription subunit 22
Gene Ontology GO:0016592; mediator complex GO:0006357regulation of transcription by RNA polymerase II GO:0001104transcription coregulator activity


Orthologs (automatic annotation)
TAIR AT1G07950 : Surfeit locus protein 5 subunit 22 of Mediator complex
RAP-DB (Rice) LOC_Os08g37480.2 : mediator of RNA polymerase II transcription subunit 22, putative, expressed
MaizeGDB (Corn) Zm00025a035568 , Zm00025a021899
Brachypodium PNT69883
Barley HORVU3Hr1G007080.1 , HORVU3Hr1G007080.2 , HORVU3Hr1G007080.3 , HORVU3Hr1G007080.4 , HORVU3Hr1G007080.5 , HORVU3Hr1G007080.6 , HORVU3Hr1G007080.7
Wheat TraesCS3A02G035900 , TraesCS3D02G044100 , TraesCS3B02G048100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G157800 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
2 Sobic.009G165500 Lung seven transmembrane receptor domain containing protein, putative, expressed -
3 Sobic.009G189200 secretory carrier-associated membrane protein, putative, expressed -
4 Sobic.003G011100 reticulon domain containing protein, putative, expressed -
5 Sobic.002G385400 ORC6 - Putative origin recognition complex subunit 6, expressed K02608: origin recognition complex subunit 6
6 Sobic.010G265900 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
7 Sobic.002G258300 peroxidase precursor, putative, expressed K00430: peroxidase
8 Sobic.006G200000 RNA recognition motif, putative, expressed -
9 Sobic.006G102900 expressed protein -
10 Sobic.006G191700 expansin precursor, putative, expressed -
11 Sobic.001G412500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K18732: SARNP, CIP29, SAP domain-containing ribonucleoprotein
12 Sobic.003G034600 CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
13 Sobic.001G418000 NAD dependent epimerase/dehydratase family domain containing protein, expressed K12450: UDP-glucose 4,6-dehydratase
14 Sobic.003G396600 down-regulated TF in developmental senescence(PubMedID : 27586543)@ZOS5-12 - C2H2 zinc finger protein, expressed -
15 Sobic.001G078600 CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
16 Sobic.010G144900 fiber protein Fb34, putative, expressed -
17 Sobic.001G528600 remorin family protein, putative, expressed -
18 Sobic.003G122200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
19 Sobic.009G191200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
20 Sobic.005G080900 expressed protein -


Gene co-expression network
sample Sobic003G084300 Sobic003G084300 Sobic001G157800 Sobic001G157800 Sobic003G084300--Sobic001G157800 Sobic009G165500 Sobic009G165500 Sobic003G084300--Sobic009G165500 Sobic009G189200 Sobic009G189200 Sobic003G084300--Sobic009G189200 Sobic003G011100 Sobic003G011100 Sobic003G084300--Sobic003G011100 Sobic002G385400 Sobic002G385400 Sobic003G084300--Sobic002G385400 Sobic010G265900 Sobic010G265900 Sobic003G084300--Sobic010G265900 Sobic002G258300 Sobic002G258300 Sobic003G084300--Sobic002G258300 Sobic006G200000 Sobic006G200000 Sobic003G084300--Sobic006G200000 Sobic006G102900 Sobic006G102900 Sobic003G084300--Sobic006G102900 Sobic001G157800--Sobic003G084300 Sobic001G157800--Sobic006G200000 Sobic003G396600 Sobic003G396600 Sobic001G157800--Sobic003G396600 Sobic001G157800--Sobic002G385400 Sobic003G096000 Sobic003G096000 Sobic001G157800--Sobic003G096000 Sobic003G294100 Sobic003G294100 Sobic001G157800--Sobic003G294100 Sobic001G157800--Sobic010G265900 Sobic002G361700 Sobic002G361700 Sobic001G157800--Sobic002G361700 Sobic007G044400 Sobic007G044400 Sobic001G157800--Sobic007G044400 Sobic009G165500--Sobic003G084300 Sobic001G505000 Sobic001G505000 Sobic009G165500--Sobic001G505000 Sobic006G149200 Sobic006G149200 Sobic009G165500--Sobic006G149200 Sobic010G238800 Sobic010G238800 Sobic009G165500--Sobic010G238800 Sobic010G054200 Sobic010G054200 Sobic009G165500--Sobic010G054200 Sobic001G429000 Sobic001G429000 Sobic009G165500--Sobic001G429000 Sobic008G135000 Sobic008G135000 Sobic009G165500--Sobic008G135000 Sobic001G412500 Sobic001G412500 Sobic009G165500--Sobic001G412500 Sobic006G201500 Sobic006G201500 Sobic009G165500--Sobic006G201500 Sobic009G189200--Sobic006G102900 Sobic001G261549 Sobic001G261549 Sobic009G189200--Sobic001G261549 Sobic002G057500 Sobic002G057500 Sobic009G189200--Sobic002G057500 Sobic010G144900 Sobic010G144900 Sobic009G189200--Sobic010G144900 Sobic009G189200--Sobic007G044400 Sobic004G285900 Sobic004G285900 Sobic009G189200--Sobic004G285900 Sobic009G189200--Sobic003G084300 Sobic003G122200 Sobic003G122200 Sobic009G189200--Sobic003G122200 Sobic001G131600 Sobic001G131600 Sobic009G189200--Sobic001G131600 Sobic007G150800 Sobic007G150800 Sobic003G011100--Sobic007G150800 Sobic006G216600 Sobic006G216600 Sobic003G011100--Sobic006G216600 Sobic001G475500 Sobic001G475500 Sobic003G011100--Sobic001G475500 Sobic003G011100--Sobic006G201500 Sobic003G011100--Sobic003G396600 Sobic009G144300 Sobic009G144300 Sobic003G011100--Sobic009G144300 Sobic006G115000 Sobic006G115000 Sobic003G011100--Sobic006G115000 Sobic003G387900 Sobic003G387900 Sobic003G011100--Sobic003G387900 Sobic009G233400 Sobic009G233400 Sobic003G011100--Sobic009G233400 Sobic004G217450 Sobic004G217450 Sobic002G385400--Sobic004G217450 Sobic010G023900 Sobic010G023900 Sobic002G385400--Sobic010G023900 Sobic002G385400--Sobic002G258300 Sobic004G342400 Sobic004G342400 Sobic002G385400--Sobic004G342400 Sobic002G385400--Sobic003G084300 Sobic005G080900 Sobic005G080900 Sobic002G385400--Sobic005G080900 Sobic003G034600 Sobic003G034600 Sobic002G385400--Sobic003G034600 Sobic004G274900 Sobic004G274900 Sobic002G385400--Sobic004G274900 Sobic002G385400--Sobic006G115000 Sobic010G265900--Sobic006G200000 Sobic005G120500 Sobic005G120500 Sobic010G265900--Sobic005G120500 Sobic010G265900--Sobic006G102900 Sobic010G265900--Sobic005G080900 Sobic010G265900--Sobic003G084300 Sobic010G265900--Sobic009G189200 Sobic006G120700 Sobic006G120700 Sobic010G265900--Sobic006G120700 Sobic010G265900--Sobic001G157800 Sobic004G344500 Sobic004G344500 Sobic010G265900--Sobic004G344500 Sobic002G258300--Sobic002G385400 Sobic002G258300--Sobic004G285900 Sobic002G258300--Sobic007G150800 Sobic002G258300--Sobic003G084300 Sobic002G258300--Sobic003G011100 Sobic001G078600 Sobic001G078600 Sobic002G258300--Sobic001G078600 Sobic006G140100 Sobic006G140100 Sobic002G258300--Sobic006G140100 Sobic002G258300--Sobic004G344500 Sobic006G278100 Sobic006G278100 Sobic002G258300--Sobic006G278100 Sobic006G200000--Sobic006G120700 Sobic006G200000--Sobic005G080900 Sobic006G200000--Sobic003G396600 Sobic006G200000--Sobic010G265900 Sobic006G200000--Sobic003G034600 Sobic010G115200 Sobic010G115200 Sobic006G200000--Sobic010G115200 Sobic006G083000 Sobic006G083000 Sobic006G200000--Sobic006G083000 Sobic003G300900 Sobic003G300900 Sobic006G200000--Sobic003G300900 Sobic001G410200 Sobic001G410200 Sobic006G200000--Sobic001G410200 Sobic006G102900--Sobic001G078600 Sobic003G107200 Sobic003G107200 Sobic006G102900--Sobic003G107200 Sobic009G181500 Sobic009G181500 Sobic006G102900--Sobic009G181500 Sobic006G102900--Sobic001G261549 Sobic007G154500 Sobic007G154500 Sobic006G102900--Sobic007G154500 Sobic002G426800 Sobic002G426800 Sobic006G102900--Sobic002G426800 Sobic010G274000 Sobic010G274000 Sobic006G102900--Sobic010G274000 Sobic004G047100 Sobic004G047100 Sobic006G102900--Sobic004G047100 Sobic006G102900--Sobic009G189200
Octagon: transcription factors


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