Gene annotation
Transcriptome id Sobic.006G200000.1
Synonym Sb06g027200
Functional annotation RNA recognition motif, putative, expressed
UniProt C5YF27
Pfam PF00076
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G17720 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os04g50790.1 : RNA recognition motif, putative, expressed
MaizeGDB (Corn) Zm00025a009980 , Zm00025a056909
Brachypodium KQJ84330 , KQJ84329 , PNT61748
Barley -
Wheat TraesCS2B02G466100 , TraesCS2D02G444000 , TraesCS2A02G445100
Populus -


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cDNA sequences
Sobic.006G200000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G120700 N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, putative, expressed K03434: N-acetylglucosaminylphosphatidylinositol deacetylase
2 Sobic.005G080900 expressed protein -
3 Sobic.003G396600 down-regulated TF in developmental senescence(PubMedID : 27586543)@ZOS5-12 - C2H2 zinc finger protein, expressed -
4 Sobic.010G265900 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
5 Sobic.003G034600 CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
6 Sobic.010G115200 ribosomal protein L7Ae, putative, expressed K11129: NHP2, H/ACA ribonucleoprotein complex subunit 2
7 Sobic.006G083000 CAMK_CAMK_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
8 Sobic.003G300900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
9 Sobic.001G410200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@OsAPx1 - Cytosolic Ascorbate Peroxidase encoding gene 1-8, expressed K00434: L-ascorbate peroxidase
10 Sobic.007G029400 60S acidic ribosomal protein P0, putative, expressed K02941: RP-LP0, large subunit ribosomal protein LP0
11 Sobic.010G190300 lipid phosphatase protein, putative, expressed -
12 Sobic.001G068700 reticulon domain containing protein, putative, expressed -
13 Sobic.003G096000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
14 Sobic.002G101000 mitochondrial prohibitin complex protein 2, putative, expressed K17081: prohibitin 2
15 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
16 Sobic.001G157800 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
17 Sobic.002G186900 enolase, putative, expressed K01689: ENO, enolase
18 Sobic.004G344500 tubulin-specific chaperone A, putative, expressed K17292: tubulin-specific chaperone A
19 Sobic.003G011100 reticulon domain containing protein, putative, expressed -
20 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e


Gene co-expression network
sample Sobic006G200000 Sobic006G200000 Sobic006G120700 Sobic006G120700 Sobic006G200000--Sobic006G120700 Sobic005G080900 Sobic005G080900 Sobic006G200000--Sobic005G080900 Sobic003G396600 Sobic003G396600 Sobic006G200000--Sobic003G396600 Sobic010G265900 Sobic010G265900 Sobic006G200000--Sobic010G265900 Sobic003G034600 Sobic003G034600 Sobic006G200000--Sobic003G034600 Sobic010G115200 Sobic010G115200 Sobic006G200000--Sobic010G115200 Sobic006G083000 Sobic006G083000 Sobic006G200000--Sobic006G083000 Sobic003G300900 Sobic003G300900 Sobic006G200000--Sobic003G300900 Sobic001G410200 Sobic001G410200 Sobic006G200000--Sobic001G410200 Sobic006G120700--Sobic006G200000 Sobic001G068700 Sobic001G068700 Sobic006G120700--Sobic001G068700 Sobic002G101000 Sobic002G101000 Sobic006G120700--Sobic002G101000 Sobic006G120700--Sobic003G396600 Sobic010G144900 Sobic010G144900 Sobic006G120700--Sobic010G144900 Sobic006G120700--Sobic010G265900 Sobic002G236700 Sobic002G236700 Sobic006G120700--Sobic002G236700 Sobic007G044400 Sobic007G044400 Sobic006G120700--Sobic007G044400 Sobic006G102900 Sobic006G102900 Sobic006G120700--Sobic006G102900 Sobic003G436700 Sobic003G436700 Sobic005G080900--Sobic003G436700 Sobic003G109600 Sobic003G109600 Sobic005G080900--Sobic003G109600 Sobic004G252100 Sobic004G252100 Sobic005G080900--Sobic004G252100 Sobic002G379500 Sobic002G379500 Sobic005G080900--Sobic002G379500 Sobic006G067800 Sobic006G067800 Sobic005G080900--Sobic006G067800 Sobic009G101700 Sobic009G101700 Sobic005G080900--Sobic009G101700 Sobic006G261900 Sobic006G261900 Sobic005G080900--Sobic006G261900 Sobic001G016500 Sobic001G016500 Sobic005G080900--Sobic001G016500 Sobic002G286900 Sobic002G286900 Sobic005G080900--Sobic002G286900 Sobic003G396600--Sobic006G200000 Sobic004G349700 Sobic004G349700 Sobic003G396600--Sobic004G349700 Sobic003G011100 Sobic003G011100 Sobic003G396600--Sobic003G011100 Sobic003G396600--Sobic005G080900 Sobic003G396600--Sobic010G115200 Sobic009G088200 Sobic009G088200 Sobic003G396600--Sobic009G088200 Sobic003G396600--Sobic002G101000 Sobic010G069400 Sobic010G069400 Sobic003G396600--Sobic010G069400 Sobic001G397000 Sobic001G397000 Sobic003G396600--Sobic001G397000 Sobic010G265900--Sobic006G200000 Sobic005G120500 Sobic005G120500 Sobic010G265900--Sobic005G120500 Sobic010G265900--Sobic006G102900 Sobic010G265900--Sobic005G080900 Sobic003G084300 Sobic003G084300 Sobic010G265900--Sobic003G084300 Sobic009G189200 Sobic009G189200 Sobic010G265900--Sobic009G189200 Sobic010G265900--Sobic006G120700 Sobic001G157800 Sobic001G157800 Sobic010G265900--Sobic001G157800 Sobic004G344500 Sobic004G344500 Sobic010G265900--Sobic004G344500 Sobic004G217450 Sobic004G217450 Sobic003G034600--Sobic004G217450 Sobic003G122200 Sobic003G122200 Sobic003G034600--Sobic003G122200 Sobic001G475500 Sobic001G475500 Sobic003G034600--Sobic001G475500 Sobic003G307400 Sobic003G307400 Sobic003G034600--Sobic003G307400 Sobic006G191800 Sobic006G191800 Sobic003G034600--Sobic006G191800 Sobic003G034600--Sobic006G200000 Sobic003G160700 Sobic003G160700 Sobic003G034600--Sobic003G160700 Sobic009G173500 Sobic009G173500 Sobic003G034600--Sobic009G173500 Sobic007G150800 Sobic007G150800 Sobic003G034600--Sobic007G150800 Sobic001G361600 Sobic001G361600 Sobic010G115200--Sobic001G361600 Sobic010G115200--Sobic004G252100 Sobic010G115200--Sobic004G349700 Sobic006G057200 Sobic006G057200 Sobic010G115200--Sobic006G057200 Sobic010G115200--Sobic003G396600 Sobic010G115200--Sobic006G200000 Sobic005G113300 Sobic005G113300 Sobic010G115200--Sobic005G113300 Sobic003G347900 Sobic003G347900 Sobic010G115200--Sobic003G347900 Sobic010G115200--Sobic010G069400 Sobic006G083000--Sobic006G200000 Sobic002G385400 Sobic002G385400 Sobic006G083000--Sobic002G385400 Sobic006G083000--Sobic001G157800 Sobic003G096000 Sobic003G096000 Sobic006G083000--Sobic003G096000 Sobic006G083000--Sobic010G265900 Sobic006G083000--Sobic003G396600 Sobic006G083000--Sobic004G344500 Sobic002G186900 Sobic002G186900 Sobic006G083000--Sobic002G186900 Sobic006G083000--Sobic003G034600 Sobic008G170500 Sobic008G170500 Sobic003G300900--Sobic008G170500 Sobic010G190300 Sobic010G190300 Sobic003G300900--Sobic010G190300 Sobic008G135500 Sobic008G135500 Sobic003G300900--Sobic008G135500 Sobic003G128700 Sobic003G128700 Sobic003G300900--Sobic003G128700 Sobic003G300900--Sobic001G410200 Sobic003G300900--Sobic006G200000 Sobic003G300900--Sobic001G397000 Sobic006G245500 Sobic006G245500 Sobic003G300900--Sobic006G245500 Sobic010G090100 Sobic010G090100 Sobic003G300900--Sobic010G090100 Sobic001G410200--Sobic010G190300 Sobic001G410200--Sobic003G300900 Sobic001G410200--Sobic006G200000 Sobic007G029400 Sobic007G029400 Sobic001G410200--Sobic007G029400 Sobic003G410500 Sobic003G410500 Sobic001G410200--Sobic003G410500 Sobic001G410200--Sobic005G113300 Sobic003G333800 Sobic003G333800 Sobic001G410200--Sobic003G333800 Sobic002G379600 Sobic002G379600 Sobic001G410200--Sobic002G379600 Sobic009G212400 Sobic009G212400 Sobic001G410200--Sobic009G212400
Octagon: transcription factors


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