Gene annotation
Transcriptome id Sobic.001G410200.1
Synonym MEE6, ATAPX01, Sb01g038760, ATAPX1, APX1, CS1
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
OsAPx1 - Cytosolic Ascorbate Peroxidase encoding gene 1-8, expressed
UniProt C5WNL8
Pfam PF00141
Panther DB PTHR31356 PTHR31356:SF14
NCBI CDD -
KEGG Orthology K00434; L-ascorbate peroxidase
Gene Ontology GO:0006979; response to oxidative stress GO:0004601peroxidase activity


Orthologs (automatic annotation)
TAIR AT1G07890 : ascorbate peroxidase 1
RAP-DB (Rice) LOC_Os03g17690.1 : OsAPx1 - Cytosolic Ascorbate Peroxidase encoding gene 1-8, expressed
MaizeGDB (Corn) Zm00025a001941 , Zm00025a004915 , Zm00025a034126 , Zm00025a056675 , Zm00025a035102 , Zm00025a023040 , Zm00025a004215 , Zm00025a030360 , Zm00025a052698 , Zm00025a031187 , Zm00025a044418
Brachypodium KQK22202 , KQK22201
Barley HORVU4Hr1G057170.4 , HORVU4Hr1G057170.5 , HORVU4Hr1G057170.2 , HORVU4Hr1G057170.3 , HORVU4Hr1G057170.1 , HORVU4Hr1G057210.3 , HORVU4Hr1G057210.2 , HORVU4Hr1G057210.1
Wheat TraesCS4A02G106300 , TraesCS4A02G106300 , TraesCS4B02G197900 , TraesCS4B02G197900 , TraesCS4D02G198500
Populus -


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cDNA sequences
Sobic.001G410200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G190300 lipid phosphatase protein, putative, expressed -
2 Sobic.003G300900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
3 Sobic.006G200000 RNA recognition motif, putative, expressed -
4 Sobic.007G029400 60S acidic ribosomal protein P0, putative, expressed K02941: RP-LP0, large subunit ribosomal protein LP0
5 Sobic.003G410500 transaldolase, putative, expressed K00616: E2.2.1.2, talA, transaldolase
6 Sobic.005G113300 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
7 Sobic.003G333800 NADH-cytochrome b5 reductase, putative, expressed K00326: cytochrome-b5 reductase
8 Sobic.002G379600 phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed K01626: E2.5.1.54, aroF, aroG, 3-deoxy-7-phosphoheptulonate synthase
9 Sobic.009G212400 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
10 Sobic.003G096000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
11 Sobic.003G340100 "domain confirmed by Pfam database, expressed in leaf, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
12 Sobic.007G134800 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
13 Sobic.009G179100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
14 Sobic.003G079300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
15 Sobic.010G115200 ribosomal protein L7Ae, putative, expressed K11129: NHP2, H/ACA ribonucleoprotein complex subunit 2
16 Sobic.006G261900 expressed protein -
17 Sobic.002G128800 fiber protein Fb34, putative, expressed -
18 Sobic.002G101000 mitochondrial prohibitin complex protein 2, putative, expressed K17081: prohibitin 2
19 Sobic.002G186900 enolase, putative, expressed K01689: ENO, enolase
20 Sobic.007G150800 expressed protein -


Gene co-expression network
sample Sobic001G410200 Sobic001G410200 Sobic010G190300 Sobic010G190300 Sobic001G410200--Sobic010G190300 Sobic003G300900 Sobic003G300900 Sobic001G410200--Sobic003G300900 Sobic006G200000 Sobic006G200000 Sobic001G410200--Sobic006G200000 Sobic007G029400 Sobic007G029400 Sobic001G410200--Sobic007G029400 Sobic003G410500 Sobic003G410500 Sobic001G410200--Sobic003G410500 Sobic005G113300 Sobic005G113300 Sobic001G410200--Sobic005G113300 Sobic003G333800 Sobic003G333800 Sobic001G410200--Sobic003G333800 Sobic002G379600 Sobic002G379600 Sobic001G410200--Sobic002G379600 Sobic009G212400 Sobic009G212400 Sobic001G410200--Sobic009G212400 Sobic010G190300--Sobic003G300900 Sobic010G190300--Sobic001G410200 Sobic003G340100 Sobic003G340100 Sobic010G190300--Sobic003G340100 Sobic009G111400 Sobic009G111400 Sobic010G190300--Sobic009G111400 Sobic010G190300--Sobic006G200000 Sobic004G234100 Sobic004G234100 Sobic010G190300--Sobic004G234100 Sobic004G258900 Sobic004G258900 Sobic010G190300--Sobic004G258900 Sobic003G360100 Sobic003G360100 Sobic010G190300--Sobic003G360100 Sobic009G181800 Sobic009G181800 Sobic010G190300--Sobic009G181800 Sobic008G170500 Sobic008G170500 Sobic003G300900--Sobic008G170500 Sobic003G300900--Sobic010G190300 Sobic008G135500 Sobic008G135500 Sobic003G300900--Sobic008G135500 Sobic003G128700 Sobic003G128700 Sobic003G300900--Sobic003G128700 Sobic003G300900--Sobic001G410200 Sobic003G300900--Sobic006G200000 Sobic001G397000 Sobic001G397000 Sobic003G300900--Sobic001G397000 Sobic006G245500 Sobic006G245500 Sobic003G300900--Sobic006G245500 Sobic010G090100 Sobic010G090100 Sobic003G300900--Sobic010G090100 Sobic006G120700 Sobic006G120700 Sobic006G200000--Sobic006G120700 Sobic005G080900 Sobic005G080900 Sobic006G200000--Sobic005G080900 Sobic003G396600 Sobic003G396600 Sobic006G200000--Sobic003G396600 Sobic010G265900 Sobic010G265900 Sobic006G200000--Sobic010G265900 Sobic003G034600 Sobic003G034600 Sobic006G200000--Sobic003G034600 Sobic010G115200 Sobic010G115200 Sobic006G200000--Sobic010G115200 Sobic006G083000 Sobic006G083000 Sobic006G200000--Sobic006G083000 Sobic006G200000--Sobic003G300900 Sobic006G200000--Sobic001G410200 Sobic005G050500 Sobic005G050500 Sobic007G029400--Sobic005G050500 Sobic001G039400 Sobic001G039400 Sobic007G029400--Sobic001G039400 Sobic009G179100 Sobic009G179100 Sobic007G029400--Sobic009G179100 Sobic003G109600 Sobic003G109600 Sobic007G029400--Sobic003G109600 Sobic002G304900 Sobic002G304900 Sobic007G029400--Sobic002G304900 Sobic009G233400 Sobic009G233400 Sobic007G029400--Sobic009G233400 Sobic009G223300 Sobic009G223300 Sobic007G029400--Sobic009G223300 Sobic010G069400 Sobic010G069400 Sobic007G029400--Sobic010G069400 Sobic004G349700 Sobic004G349700 Sobic007G029400--Sobic004G349700 Sobic001G040100 Sobic001G040100 Sobic003G410500--Sobic001G040100 Sobic001G444800 Sobic001G444800 Sobic003G410500--Sobic001G444800 Sobic004G138800 Sobic004G138800 Sobic003G410500--Sobic004G138800 Sobic003G219800 Sobic003G219800 Sobic003G410500--Sobic003G219800 Sobic002G257300 Sobic002G257300 Sobic003G410500--Sobic002G257300 Sobic001G304400 Sobic001G304400 Sobic003G410500--Sobic001G304400 Sobic003G363800 Sobic003G363800 Sobic003G410500--Sobic003G363800 Sobic003G410500--Sobic009G212400 Sobic009G238900 Sobic009G238900 Sobic003G410500--Sobic009G238900 Sobic004G220000 Sobic004G220000 Sobic005G113300--Sobic004G220000 Sobic001G295200 Sobic001G295200 Sobic005G113300--Sobic001G295200 Sobic001G361600 Sobic001G361600 Sobic005G113300--Sobic001G361600 Sobic006G116700 Sobic006G116700 Sobic005G113300--Sobic006G116700 Sobic001G018900 Sobic001G018900 Sobic005G113300--Sobic001G018900 Sobic007G197800 Sobic007G197800 Sobic005G113300--Sobic007G197800 Sobic009G076400 Sobic009G076400 Sobic005G113300--Sobic009G076400 Sobic002G379500 Sobic002G379500 Sobic005G113300--Sobic002G379500 Sobic003G160700 Sobic003G160700 Sobic005G113300--Sobic003G160700 Sobic003G333800--Sobic002G379600 Sobic009G101700 Sobic009G101700 Sobic003G333800--Sobic009G101700 Sobic004G342400 Sobic004G342400 Sobic003G333800--Sobic004G342400 Sobic003G333800--Sobic009G179100 Sobic002G101000 Sobic002G101000 Sobic003G333800--Sobic002G101000 Sobic003G333800--Sobic001G410200 Sobic010G264300 Sobic010G264300 Sobic003G333800--Sobic010G264300 Sobic009G144300 Sobic009G144300 Sobic003G333800--Sobic009G144300 Sobic001G370700 Sobic001G370700 Sobic003G333800--Sobic001G370700 Sobic002G379600--Sobic003G333800 Sobic002G379600--Sobic001G410200 Sobic002G379600--Sobic003G410500 Sobic002G128800 Sobic002G128800 Sobic002G379600--Sobic002G128800 Sobic001G459900 Sobic001G459900 Sobic002G379600--Sobic001G459900 Sobic002G379600--Sobic009G101700 Sobic002G379600--Sobic001G040100 Sobic010G023800 Sobic010G023800 Sobic002G379600--Sobic010G023800 Sobic002G379600--Sobic009G179100 Sobic003G387900 Sobic003G387900 Sobic009G212400--Sobic003G387900 Sobic006G216600 Sobic006G216600 Sobic009G212400--Sobic006G216600 Sobic009G212400--Sobic002G304900 Sobic009G212400--Sobic001G039400 Sobic009G212400--Sobic005G050500 Sobic009G212400--Sobic009G179100 Sobic009G212400--Sobic010G069400 Sobic002G056200 Sobic002G056200 Sobic009G212400--Sobic002G056200 Sobic001G483100 Sobic001G483100 Sobic009G212400--Sobic001G483100
Octagon: transcription factors


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