Gene annotation
| Transcriptome id | Sobic.003G300900.1 |
|---|---|
| Synonym | Sb03g035010 |
| Functional annotation | AAA-type ATPase family protein, putative, expressed |
| UniProt | C5XKR6 |
| Pfam | PF05496 |
| Panther DB | PTHR23074 PTHR23074:SF92 |
| NCBI CDD | KOG0738; AAA+-type ATPase |
| KEGG Orthology | K07767; katanin p60 ATPase-containing subunit A1 |
| Gene Ontology | GO:0009378; four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair |
Orthologs (automatic annotation)
| TAIR | AT2G34560 : P-loop containing nucleoside triphosphate hydrolases superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g55260.1 : AAA-type ATPase family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a027517 |
| Brachypodium | KQK09811 , KQK09812 |
| Barley | HORVU3Hr1G072910.2 , HORVU3Hr1G072910.3 , HORVU3Hr1G072910.1 , HORVU3Hr1G072910.6 , HORVU3Hr1G072910.4 , HORVU3Hr1G072910.5 |
| Wheat | TraesCS3B02G329000 , TraesCS3B02G329000 , TraesCS3D02G294200 , TraesCS3D02G294200 , TraesCS3A02G294400 |
| Populus | - |
JBrowse
| Sobic.003G300900 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G170500 | AGC_PVPK_like_kin82y.20 - ACG kinases include homologs to PKA, PKG and PKC, expressed | - |
| 2 | Sobic.010G190300 | lipid phosphatase protein, putative, expressed | - |
| 3 | Sobic.008G135500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 4 | Sobic.003G128700 | flavin monooxygenase, putative, expressed | - |
| 5 | Sobic.001G410200 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@OsAPx1 - Cytosolic Ascorbate Peroxidase encoding gene 1-8, expressed | K00434: L-ascorbate peroxidase |
| 6 | Sobic.006G200000 | RNA recognition motif, putative, expressed | - |
| 7 | Sobic.001G397000 | argininosuccinate lyase, putative, expressed | K01755: argH, argininosuccinate lyase |
| 8 | Sobic.006G245500 | down-regulated TF in developmental senescence(PubMedID : 27586543)@AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed | K09285: OVM, AP2-like factor, ANT lineage |
| 9 | Sobic.010G090100 | phosphoglycerate mutase, putative, expressed | K01834: PGAM, 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase |
| 10 | Sobic.003G340100 | "domain confirmed by Pfam database, expressed in leaf, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed | - |
| 11 | Sobic.007G134800 | 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed | K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) |
| 12 | Sobic.003G396600 | down-regulated TF in developmental senescence(PubMedID : 27586543)@ZOS5-12 - C2H2 zinc finger protein, expressed | - |
| 13 | Sobic.002G242300 | (54.2% identity with SbCCoAOMT/70.2% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed | K00588: caffeoyl-CoA O-methyltransferase |
| 14 | Sobic.010G115200 | ribosomal protein L7Ae, putative, expressed | K11129: NHP2, H/ACA ribonucleoprotein complex subunit 2 |
| 15 | Sobic.003G019400 | expressed protein | - |
| 16 | Sobic.001G078700 | Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed | - |
| 17 | Sobic.008G027700 | RALFL23 - Rapid ALkalinization Factor RALF family protein precursor, expressed | - |
| 18 | Sobic.004G263700 | expressed protein | - |
| 19 | Sobic.002G236700 | TMV-MP30 binding protein 2C, putative, expressed | - |
| 20 | Sobic.001G542200 | expansin precursor, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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