Gene annotation
Transcriptome id Sobic.001G542200.1,Sobic.001G542200.2
Synonym EXPB2, ATHEXPBETA1.4, ATEXPB2, Sb01g050440
Functional annotation expansin precursor, putative, expressed
UniProt A0A1Z5SCH0 , A0A1B6QR64
Pfam PF03330 PF01357
Panther DB PTHR31692 PTHR31692:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65680 : expansin B2
RAP-DB (Rice) LOC_Os10g40730.1 : expansin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a051976 , Zm00025a051978 , Zm00025a003327 , Zm00025a003331 , Zm00025a000109
Brachypodium KQJ97768 , KQK24135
Barley HORVU3Hr1G105520.2 , HORVU3Hr1G105520.1 , HORVU3Hr1G105170.1 , HORVU4Hr1G088140.3 , HORVU4Hr1G088140.2 , HORVU4Hr1G088140.1 , HORVU1Hr1G054250.9 , HORVU1Hr1G054250.8 , HORVU1Hr1G054250.3 , HORVU1Hr1G054250.1 , HORVU1Hr1G054250.6 , HORVU3Hr1G073140.1 , HORVU1Hr1G054250.2 , HORVU1Hr1G054250.7 , HORVU1Hr1G054250.4 , HORVU4Hr1G088080.8 , HORVU4Hr1G088080.9 , HORVU4Hr1G088080.2 , HORVU4Hr1G088080.3 , HORVU4Hr1G088080.7 , HORVU4Hr1G088080.4 , HORVU4Hr1G088080.5 , HORVU6Hr1G055090.1 , HORVU6Hr1G055090.2 , HORVU4Hr1G088080.10 , HORVU4Hr1G088080.11 , HORVU4Hr1G088080.12 , HORVU4Hr1G088080.13
Wheat TraesCS4B02G375200 , TraesCS5D02G086000 , TraesCS5B02G079400 , TraesCS3D02G474800 , TraesCS4D02G361700 , TraesCS5A02G537300 , TraesCS1B02G226100 , TraesCS1B02G226100 , TraesCS3D02G476800 , TraesCS1A02G212600 , TraesCS5A02G073100 , TraesCS6A02G217100 , TraesCS6D02G198400 , TraesCS6B02G245700 , TraesCS4B02G375600 , TraesCS5A02G538000 , TraesCS4D02G361900
Populus -


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cDNA sequences
Sobic.001G542200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G419300 xylanase inhibitor, putative, expressed -
2 Sobic.009G058600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
3 Sobic.006G227500 - -
4 Sobic.001G232000 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
5 Sobic.004G323300 SCP-like extracellular protein, expressed -
6 Sobic.003G419400 xylanase inhibitor, putative, expressed -
7 Sobic.010G134900 DNA binding protein, putative, expressed -
8 Sobic.004G112200 no apical meristem protein, putative, expressed -
9 Sobic.003G324600 transcription factor-related, putative, expressed -
10 Sobic.001G542000 LTPL112 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
11 Sobic.005G195900 transporter family protein, putative, expressed -
12 Sobic.003G019400 expressed protein -
13 Sobic.009G208700 POEI45 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
14 Sobic.008G035800 glycosyltransferase, putative, expressed K08238: xyloglucan 6-xylosyltransferase
15 Sobic.003G340100 "domain confirmed by Pfam database, expressed in leaf, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
16 Sobic.002G085900 expressed protein -
17 Sobic.003G300900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
18 Sobic.002G343100 protein kinase, putative, expressed -
19 Sobic.004G214300 AP2-like ethylene-responsive transcription factor PLETHORA 2, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
20 Sobic.001G078700 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G542200 Sobic001G542200 Sobic003G419300 Sobic003G419300 Sobic001G542200--Sobic003G419300 Sobic009G058600 Sobic009G058600 Sobic001G542200--Sobic009G058600 Sobic006G227500 Sobic006G227500 Sobic001G542200--Sobic006G227500 Sobic001G232000 Sobic001G232000 Sobic001G542200--Sobic001G232000 Sobic004G323300 Sobic004G323300 Sobic001G542200--Sobic004G323300 Sobic003G419400 Sobic003G419400 Sobic001G542200--Sobic003G419400 Sobic010G134900 Sobic010G134900 Sobic001G542200--Sobic010G134900 Sobic004G112200 Sobic004G112200 Sobic001G542200--Sobic004G112200 Sobic003G324600 Sobic003G324600 Sobic001G542200--Sobic003G324600 Sobic003G419300--Sobic001G232000 Sobic003G419300--Sobic003G419400 Sobic008G035800 Sobic008G035800 Sobic003G419300--Sobic008G035800 Sobic003G419300--Sobic009G058600 Sobic002G239700 Sobic002G239700 Sobic003G419300--Sobic002G239700 Sobic004G214300 Sobic004G214300 Sobic003G419300--Sobic004G214300 Sobic003G419300--Sobic003G324600 Sobic003G419300--Sobic004G112200 Sobic009G208700 Sobic009G208700 Sobic003G419300--Sobic009G208700 Sobic009G058600--Sobic004G112200 Sobic009G058600--Sobic003G419300 Sobic009G058600--Sobic001G232000 Sobic009G058600--Sobic004G323300 Sobic009G058600--Sobic003G324600 Sobic001G542000 Sobic001G542000 Sobic009G058600--Sobic001G542000 Sobic009G058600--Sobic008G035800 Sobic009G058600--Sobic001G542200 Sobic002G343100 Sobic002G343100 Sobic009G058600--Sobic002G343100 Sobic006G227500--Sobic004G323300 Sobic007G050200 Sobic007G050200 Sobic006G227500--Sobic007G050200 Sobic009G219200 Sobic009G219200 Sobic006G227500--Sobic009G219200 Sobic004G322100 Sobic004G322100 Sobic006G227500--Sobic004G322100 Sobic003G140700 Sobic003G140700 Sobic006G227500--Sobic003G140700 Sobic001G229000 Sobic001G229000 Sobic006G227500--Sobic001G229000 Sobic009G221500 Sobic009G221500 Sobic006G227500--Sobic009G221500 Sobic001G438200 Sobic001G438200 Sobic006G227500--Sobic001G438200 Sobic001G237800 Sobic001G237800 Sobic006G227500--Sobic001G237800 Sobic002G003400 Sobic002G003400 Sobic001G232000--Sobic002G003400 Sobic001G232000--Sobic008G035800 Sobic001G232000--Sobic003G419300 Sobic007G090600 Sobic007G090600 Sobic001G232000--Sobic007G090600 Sobic003G282300 Sobic003G282300 Sobic001G232000--Sobic003G282300 Sobic008G077900 Sobic008G077900 Sobic001G232000--Sobic008G077900 Sobic002G118900 Sobic002G118900 Sobic001G232000--Sobic002G118900 Sobic001G263300 Sobic001G263300 Sobic001G232000--Sobic001G263300 Sobic001G232000--Sobic009G208700 Sobic004G323300--Sobic004G322100 Sobic001G238200 Sobic001G238200 Sobic004G323300--Sobic001G238200 Sobic003G064800 Sobic003G064800 Sobic004G323300--Sobic003G064800 Sobic004G323300--Sobic003G140700 Sobic004G323300--Sobic006G227500 Sobic004G306900 Sobic004G306900 Sobic004G323300--Sobic004G306900 Sobic004G323300--Sobic007G050200 Sobic004G323300--Sobic001G229000 Sobic007G086300 Sobic007G086300 Sobic004G323300--Sobic007G086300 Sobic003G419400--Sobic003G419300 Sobic003G419400--Sobic001G232000 Sobic003G419400--Sobic002G239700 Sobic002G076700 Sobic002G076700 Sobic003G419400--Sobic002G076700 Sobic002G091000 Sobic002G091000 Sobic003G419400--Sobic002G091000 Sobic003G419400--Sobic009G208700 Sobic003G419400--Sobic004G214300 Sobic003G419400--Sobic008G077900 Sobic005G071700 Sobic005G071700 Sobic003G419400--Sobic005G071700 Sobic001G261400 Sobic001G261400 Sobic010G134900--Sobic001G261400 Sobic010G134900--Sobic004G214300 Sobic009G102400 Sobic009G102400 Sobic010G134900--Sobic009G102400 Sobic006G124200 Sobic006G124200 Sobic010G134900--Sobic006G124200 Sobic010G134900--Sobic003G419300 Sobic010G155100 Sobic010G155100 Sobic010G134900--Sobic010G155100 Sobic010G134900--Sobic002G239700 Sobic010G134900--Sobic004G112200 Sobic010G134900--Sobic003G419400 Sobic004G112200--Sobic009G058600 Sobic004G112200--Sobic003G324600 Sobic004G112200--Sobic002G239700 Sobic004G112200--Sobic003G419300 Sobic004G112200--Sobic004G214300 Sobic004G112200--Sobic001G232000 Sobic001G307600 Sobic001G307600 Sobic004G112200--Sobic001G307600 Sobic004G112200--Sobic010G155100 Sobic004G112200--Sobic008G077900 Sobic003G324600--Sobic004G112200 Sobic003G324600--Sobic003G419300 Sobic003G324600--Sobic002G239700 Sobic003G324600--Sobic009G058600 Sobic003G324600--Sobic008G035800 Sobic006G201000 Sobic006G201000 Sobic003G324600--Sobic006G201000 Sobic003G324600--Sobic001G232000 Sobic003G324600--Sobic001G307600 Sobic003G324600--Sobic004G214300
Octagon: transcription factors


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