Gene annotation
Transcriptome id Sobic.010G134900.2,Sobic.010G134900.5
Synonym Sb10g012980, AGF1
Functional annotation DNA binding protein, putative, expressed
UniProt A0A194YIX9
Pfam PF03479
Panther DB PTHR31100 PTHR31100:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G76500 : Predicted AT-hook DNA-binding family protein
RAP-DB (Rice) LOC_Os02g48320.1,LOC_Os02g48320.2 : DNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a050672 , Zm00025a022635 , Zm00025a032511 , Zm00025a021796
Brachypodium PNT71530
Barley HORVU4Hr1G060280.1 , HORVU0Hr1G011700.1 , HORVU7Hr1G046930.1 , HORVU6Hr1G091740.1 , HORVU6Hr1G091740.3 , HORVU6Hr1G091740.2 , HORVU6Hr1G010470.1 , HORVU6Hr1G010470.2 , HORVU7Hr1G017700.2 , HORVU7Hr1G017700.3 , HORVU7Hr1G017700.1 , HORVU7Hr1G017700.4
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G261400 STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed -
2 Sobic.004G214300 AP2-like ethylene-responsive transcription factor PLETHORA 2, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
3 Sobic.009G102400 "domain confirmed by Pfam database, expressed in root, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
4 Sobic.006G124200 expressed protein -
5 Sobic.003G419300 xylanase inhibitor, putative, expressed -
6 Sobic.010G155100 NAC domain containing protein, putative, expressed -
7 Sobic.002G239700 receptor-like protein kinase 2 precursor, putative, expressed -
8 Sobic.004G112200 no apical meristem protein, putative, expressed -
9 Sobic.003G419400 xylanase inhibitor, putative, expressed -
10 Sobic.010G177300 receptor-like protein kinase 2 precursor, putative, expressed -
11 Sobic.003G019400 expressed protein -
12 Sobic.003G324600 transcription factor-related, putative, expressed -
13 Sobic.001G542200 expansin precursor, putative, expressed -
14 Sobic.002G218600 Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed -
15 Sobic.002G230900 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
16 Sobic.002G091000 - -
17 Sobic.004G263700 expressed protein -
18 Sobic.008G077900 exostosin family domain containing protein, expressed -
19 Sobic.006G205500 glycosyl hydrolases family 16, putative, expressed -
20 Sobic.002G374650 -(PubMedID : 26976818) K11517: (S)-2-hydroxy-acid oxidase


Gene co-expression network
sample Sobic010G134900 Sobic010G134900 Sobic001G261400 Sobic001G261400 Sobic010G134900--Sobic001G261400 Sobic004G214300 Sobic004G214300 Sobic010G134900--Sobic004G214300 Sobic009G102400 Sobic009G102400 Sobic010G134900--Sobic009G102400 Sobic006G124200 Sobic006G124200 Sobic010G134900--Sobic006G124200 Sobic003G419300 Sobic003G419300 Sobic010G134900--Sobic003G419300 Sobic010G155100 Sobic010G155100 Sobic010G134900--Sobic010G155100 Sobic002G239700 Sobic002G239700 Sobic010G134900--Sobic002G239700 Sobic004G112200 Sobic004G112200 Sobic010G134900--Sobic004G112200 Sobic003G419400 Sobic003G419400 Sobic010G134900--Sobic003G419400 Sobic001G261400--Sobic010G134900 Sobic001G261400--Sobic004G214300 Sobic001G261400--Sobic009G102400 Sobic004G263700 Sobic004G263700 Sobic001G261400--Sobic004G263700 Sobic002G230900 Sobic002G230900 Sobic001G261400--Sobic002G230900 Sobic001G261400--Sobic006G124200 Sobic002G218600 Sobic002G218600 Sobic001G261400--Sobic002G218600 Sobic010G177300 Sobic010G177300 Sobic001G261400--Sobic010G177300 Sobic001G261400--Sobic010G155100 Sobic004G214300--Sobic009G102400 Sobic004G214300--Sobic006G124200 Sobic004G214300--Sobic010G155100 Sobic004G214300--Sobic010G134900 Sobic004G214300--Sobic001G261400 Sobic004G214300--Sobic003G419300 Sobic003G019400 Sobic003G019400 Sobic004G214300--Sobic003G019400 Sobic004G214300--Sobic002G239700 Sobic004G214300--Sobic004G112200 Sobic009G102400--Sobic006G124200 Sobic009G102400--Sobic004G214300 Sobic009G102400--Sobic001G261400 Sobic009G102400--Sobic010G155100 Sobic009G102400--Sobic010G134900 Sobic009G102400--Sobic010G177300 Sobic006G013300 Sobic006G013300 Sobic009G102400--Sobic006G013300 Sobic005G105600 Sobic005G105600 Sobic009G102400--Sobic005G105600 Sobic009G102400--Sobic004G112200 Sobic006G124200--Sobic009G102400 Sobic006G124200--Sobic004G214300 Sobic006G124200--Sobic001G261400 Sobic006G124200--Sobic005G105600 Sobic006G124200--Sobic006G013300 Sobic006G124200--Sobic010G134900 Sobic006G124200--Sobic003G019400 Sobic006G124200--Sobic010G177300 Sobic003G395200 Sobic003G395200 Sobic006G124200--Sobic003G395200 Sobic001G232000 Sobic001G232000 Sobic003G419300--Sobic001G232000 Sobic003G419300--Sobic003G419400 Sobic008G035800 Sobic008G035800 Sobic003G419300--Sobic008G035800 Sobic009G058600 Sobic009G058600 Sobic003G419300--Sobic009G058600 Sobic003G419300--Sobic002G239700 Sobic003G419300--Sobic004G214300 Sobic003G324600 Sobic003G324600 Sobic003G419300--Sobic003G324600 Sobic003G419300--Sobic004G112200 Sobic009G208700 Sobic009G208700 Sobic003G419300--Sobic009G208700 Sobic010G155100--Sobic004G214300 Sobic010G155100--Sobic009G102400 Sobic010G155100--Sobic004G112200 Sobic010G155100--Sobic001G261400 Sobic010G155100--Sobic010G134900 Sobic006G205500 Sobic006G205500 Sobic010G155100--Sobic006G205500 Sobic010G155100--Sobic002G239700 Sobic010G155100--Sobic006G124200 Sobic010G155100--Sobic003G019400 Sobic008G077900 Sobic008G077900 Sobic002G239700--Sobic008G077900 Sobic005G222600 Sobic005G222600 Sobic002G239700--Sobic005G222600 Sobic002G239700--Sobic006G205500 Sobic002G239700--Sobic001G232000 Sobic005G071700 Sobic005G071700 Sobic002G239700--Sobic005G071700 Sobic002G239700--Sobic003G419300 Sobic003G001300 Sobic003G001300 Sobic002G239700--Sobic003G001300 Sobic002G239700--Sobic003G419400 Sobic009G060700 Sobic009G060700 Sobic002G239700--Sobic009G060700 Sobic004G112200--Sobic009G058600 Sobic004G112200--Sobic003G324600 Sobic004G112200--Sobic002G239700 Sobic004G112200--Sobic003G419300 Sobic004G112200--Sobic004G214300 Sobic004G112200--Sobic001G232000 Sobic001G307600 Sobic001G307600 Sobic004G112200--Sobic001G307600 Sobic004G112200--Sobic010G155100 Sobic004G112200--Sobic008G077900 Sobic003G419400--Sobic003G419300 Sobic003G419400--Sobic001G232000 Sobic003G419400--Sobic002G239700 Sobic002G076700 Sobic002G076700 Sobic003G419400--Sobic002G076700 Sobic002G091000 Sobic002G091000 Sobic003G419400--Sobic002G091000 Sobic003G419400--Sobic009G208700 Sobic003G419400--Sobic004G214300 Sobic003G419400--Sobic008G077900 Sobic003G419400--Sobic005G071700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.