Gene annotation
| Transcriptome id | Sobic.003G324600.1 |
|---|---|
| Synonym | Sb03g037090 |
| Functional annotation | transcription factor-related, putative, expressed |
| UniProt | C5XMF1 |
| Pfam | PF14215 |
| Panther DB | PTHR13902 PTHR13902:SF3 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G53900 : Serine/threonine-protein kinase WNK (With No Lysine)-related |
|---|---|
| RAP-DB (Rice) | LOC_Os11g25920.1 : transcription factor-related, putative, expressed |
| MaizeGDB (Corn) | Zm00025a027209 , Zm00025a039853 |
| Brachypodium | KQK10164 , KQK10163 , KQK10162 |
| Barley | HORVU3Hr1G078210.28 , HORVU3Hr1G078210.23 , HORVU3Hr1G078210.17 , HORVU3Hr1G078210.16 , HORVU3Hr1G078210.15 , HORVU3Hr1G078210.14 , HORVU3Hr1G078210.13 , HORVU3Hr1G078210.12 , HORVU3Hr1G078210.11 , HORVU3Hr1G078210.10 , HORVU3Hr1G078210.19 , HORVU3Hr1G078210.18 , HORVU3Hr1G078210.9 , HORVU3Hr1G078210.8 , HORVU3Hr1G078210.7 , HORVU3Hr1G078210.6 , HORVU3Hr1G078210.5 , HORVU3Hr1G078210.4 , HORVU3Hr1G078210.3 , HORVU3Hr1G078210.2 , HORVU3Hr1G078210.1 , HORVU3Hr1G078210.29 , HORVU3Hr1G078210.26 , HORVU3Hr1G078210.27 , HORVU3Hr1G078210.24 , HORVU3Hr1G078210.25 , HORVU3Hr1G078210.22 , HORVU3Hr1G078210.20 , HORVU3Hr1G078210.21 |
| Wheat | TraesCS3A02G328200 , TraesCS3D02G321800 , TraesCS3B02G358200 |
| Populus | - |
JBrowse
| Sobic.003G324600 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G112200 | no apical meristem protein, putative, expressed | - |
| 2 | Sobic.003G419300 | xylanase inhibitor, putative, expressed | - |
| 3 | Sobic.002G239700 | receptor-like protein kinase 2 precursor, putative, expressed | - |
| 4 | Sobic.009G058600 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed | - |
| 5 | Sobic.008G035800 | glycosyltransferase, putative, expressed | K08238: xyloglucan 6-xylosyltransferase |
| 6 | Sobic.006G201000 | WRKY37, expressed | - |
| 7 | Sobic.001G232000 | glycine-rich cell wall structural protein 2 precursor, putative, expressed | - |
| 8 | Sobic.001G307600 | oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed | - |
| 9 | Sobic.004G214300 | AP2-like ethylene-responsive transcription factor PLETHORA 2, putative, expressed | K09285: OVM, AP2-like factor, ANT lineage |
| 10 | Sobic.008G077900 | exostosin family domain containing protein, expressed | - |
| 11 | Sobic.004G258900 | - | - |
| 12 | Sobic.009G221500 | lipid phosphatase protein, putative, expressed | - |
| 13 | Sobic.009G208700 | POEI45 - Pollen Ole e I allergen and extensin family protein precursor, expressed | - |
| 14 | Sobic.002G343100 | protein kinase, putative, expressed | - |
| 15 | Sobic.004G322000 | hypro1, putative, expressed | - |
| 16 | Sobic.005G041300 | amino acid permease family protein, putative, expressed | - |
| 17 | Sobic.003G226800 | Relatively abundant in the susceptible sorghum under stress(PubMedID : 26645959)@RHsf 13/Put. Hsf 1(PubMedID : 27006630)@down-regulated TF in developmental senescence(PubMedID : 27586543)@HSF-type DNA-binding domain containing protein, expressed | K09419: heat shock transcription factor, other eukaryote |
| 18 | Sobic.003G121500 | expressed protein | - |
| 19 | Sobic.006G205500 | glycosyl hydrolases family 16, putative, expressed | - |
| 20 | Sobic.002G250300 | dehydrogenase, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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