Gene annotation
Transcriptome id Sobic.001G307600.1,Sobic.001G307600.2
Synonym Sb01g029980
Functional annotation oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed
UniProt C5WTF5
Pfam PF00106
Panther DB PTHR24320 PTHR24320:SF100
NCBI CDD KOG1208; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT4G11410 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os10g40020.3,LOC_Os10g40020.2 : oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed
MaizeGDB (Corn) Zm00025a052038 , Zm00025a003263
Brachypodium -
Barley -
Wheat TraesCS1D02G210800 , TraesCS1A02G207500 , TraesCS1B02G221200 , TraesCS1B02G221200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G035800 glycosyltransferase, putative, expressed K08238: xyloglucan 6-xylosyltransferase
2 Sobic.004G271800 WRKY66, expressed -
3 Sobic.004G312200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@WRKY32, expressed -
4 Sobic.010G082000 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
5 Sobic.004G322000 hypro1, putative, expressed -
6 Sobic.007G090472 - -
7 Sobic.001G232000 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
8 Sobic.006G201000 WRKY37, expressed -
9 Sobic.006G092700 MLO domain containing protein, putative, expressed K08472: mlo protein
10 Sobic.003G240400 leaf senescence related protein, putative, expressed -
11 Sobic.001G263300 glycosyltransferase, putative, expressed K18207: POMGNT2, protein O-mannose beta-1,4-N-acetylglucosaminyltransferase
12 Sobic.010G028100 GDP-mannose 4,6 dehydratase 2, putative, expressed K01711: gmd, GDPmannose 4,6-dehydratase
13 Sobic.002G003400 peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.004G112200 no apical meristem protein, putative, expressed -
15 Sobic.010G152400 glycosyltransferase, putative, expressed -
16 Sobic.007G090600 CSLC3 - cellulose synthase-like family C, expressed -
17 Sobic.004G322100 hypro1, putative, expressed -
18 Sobic.003G182200 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed -
19 Sobic.006G135300 expressed protein -
20 Sobic.006G183900 cytochrome P450, putative, expressed -


Gene co-expression network
sample Sobic001G307600 Sobic001G307600 Sobic008G035800 Sobic008G035800 Sobic001G307600--Sobic008G035800 Sobic004G271800 Sobic004G271800 Sobic001G307600--Sobic004G271800 Sobic004G312200 Sobic004G312200 Sobic001G307600--Sobic004G312200 Sobic010G082000 Sobic010G082000 Sobic001G307600--Sobic010G082000 Sobic004G322000 Sobic004G322000 Sobic001G307600--Sobic004G322000 Sobic007G090472 Sobic007G090472 Sobic001G307600--Sobic007G090472 Sobic001G232000 Sobic001G232000 Sobic001G307600--Sobic001G232000 Sobic006G201000 Sobic006G201000 Sobic001G307600--Sobic006G201000 Sobic006G092700 Sobic006G092700 Sobic001G307600--Sobic006G092700 Sobic003G240400 Sobic003G240400 Sobic008G035800--Sobic003G240400 Sobic003G282300 Sobic003G282300 Sobic008G035800--Sobic003G282300 Sobic007G090600 Sobic007G090600 Sobic008G035800--Sobic007G090600 Sobic008G035800--Sobic004G322000 Sobic009G208700 Sobic009G208700 Sobic008G035800--Sobic009G208700 Sobic010G152400 Sobic010G152400 Sobic008G035800--Sobic010G152400 Sobic003G140200 Sobic003G140200 Sobic008G035800--Sobic003G140200 Sobic008G035800--Sobic004G271800 Sobic008G035800--Sobic010G082000 Sobic003G000100 Sobic003G000100 Sobic004G271800--Sobic003G000100 Sobic004G271800--Sobic003G240400 Sobic004G271800--Sobic010G152400 Sobic004G322100 Sobic004G322100 Sobic004G271800--Sobic004G322100 Sobic006G019700 Sobic006G019700 Sobic004G271800--Sobic006G019700 Sobic004G271800--Sobic006G092700 Sobic003G215300 Sobic003G215300 Sobic004G271800--Sobic003G215300 Sobic004G271800--Sobic008G035800 Sobic004G106100 Sobic004G106100 Sobic004G271800--Sobic004G106100 Sobic005G115300 Sobic005G115300 Sobic004G312200--Sobic005G115300 Sobic001G503000 Sobic001G503000 Sobic004G312200--Sobic001G503000 Sobic006G196400 Sobic006G196400 Sobic004G312200--Sobic006G196400 Sobic005G175900 Sobic005G175900 Sobic004G312200--Sobic005G175900 Sobic004G312200--Sobic010G082000 Sobic003G185300 Sobic003G185300 Sobic004G312200--Sobic003G185300 Sobic001G263300 Sobic001G263300 Sobic004G312200--Sobic001G263300 Sobic004G312200--Sobic003G215300 Sobic001G149400 Sobic001G149400 Sobic004G312200--Sobic001G149400 Sobic010G082000--Sobic006G092700 Sobic010G082000--Sobic003G240400 Sobic006G135300 Sobic006G135300 Sobic010G082000--Sobic006G135300 Sobic010G082000--Sobic010G152400 Sobic006G028500 Sobic006G028500 Sobic010G082000--Sobic006G028500 Sobic010G082000--Sobic003G215300 Sobic010G082000--Sobic006G019700 Sobic007G073000 Sobic007G073000 Sobic010G082000--Sobic007G073000 Sobic010G082000--Sobic006G196400 Sobic004G322000--Sobic007G090600 Sobic004G322000--Sobic003G215300 Sobic006G031100 Sobic006G031100 Sobic004G322000--Sobic006G031100 Sobic004G322000--Sobic003G140200 Sobic004G322000--Sobic003G282300 Sobic004G322000--Sobic003G240400 Sobic004G322000--Sobic008G035800 Sobic004G322000--Sobic010G082000 Sobic004G014600 Sobic004G014600 Sobic004G322000--Sobic004G014600 Sobic010G028100 Sobic010G028100 Sobic007G090472--Sobic010G028100 Sobic007G090472--Sobic007G073000 Sobic001G360500 Sobic001G360500 Sobic007G090472--Sobic001G360500 Sobic007G090472--Sobic010G082000 Sobic007G090472--Sobic006G092700 Sobic007G090472--Sobic006G135300 Sobic006G229100 Sobic006G229100 Sobic007G090472--Sobic006G229100 Sobic007G090472--Sobic001G503000 Sobic007G090472--Sobic003G215300 Sobic002G003400 Sobic002G003400 Sobic001G232000--Sobic002G003400 Sobic001G232000--Sobic008G035800 Sobic003G419300 Sobic003G419300 Sobic001G232000--Sobic003G419300 Sobic001G232000--Sobic007G090600 Sobic001G232000--Sobic003G282300 Sobic008G077900 Sobic008G077900 Sobic001G232000--Sobic008G077900 Sobic002G118900 Sobic002G118900 Sobic001G232000--Sobic002G118900 Sobic001G232000--Sobic001G263300 Sobic001G232000--Sobic009G208700 Sobic006G201000--Sobic004G271800 Sobic003G183300 Sobic003G183300 Sobic006G201000--Sobic003G183300 Sobic006G201000--Sobic008G035800 Sobic006G201000--Sobic010G082000 Sobic006G201000--Sobic006G092700 Sobic006G201000--Sobic006G135300 Sobic006G201000--Sobic004G322000 Sobic006G201000--Sobic007G090600 Sobic006G201000--Sobic003G240400 Sobic006G092700--Sobic006G135300 Sobic006G092700--Sobic010G082000 Sobic006G092700--Sobic010G028100 Sobic006G092700--Sobic003G000100 Sobic006G092700--Sobic007G073000 Sobic006G092700--Sobic010G152400 Sobic002G146000 Sobic002G146000 Sobic006G092700--Sobic002G146000 Sobic004G306900 Sobic004G306900 Sobic006G092700--Sobic004G306900 Sobic006G092700--Sobic006G019700
Octagon: transcription factors


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