Gene annotation
Transcriptome id Sobic.003G226800.1
Synonym heat shock transcription factor;Heat shock transcription factor 17, SbHsf17;Heat shock transcription factor 17, Sb03g028470, HSFC1, SbHsf17, AT-HSFC1
Functional annotation Relatively abundant in the susceptible sorghum under stress (PubMedID : 26645959)
RHsf 13/Put. Hsf 1 (PubMedID : 27006630)
down-regulated TF in developmental senescence (PubMedID : 27586543)
HSF-type DNA-binding domain containing protein, expressed
UniProt C5XEC7
Pfam PF00447
Panther DB PTHR10015 PTHR10015:SF187
NCBI CDD -
KEGG Orthology K09419; heat shock transcription factor, other eukaryote
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT4G17750 : heat shock factor 1
RAP-DB (Rice) LOC_Os01g43590.2 : HSF-type DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008110 , Zm00025a020093 , Zm00025a028347 , Zm00025a038597 , Zm00025a027698 , Zm00025a033648 , Zm00025a006888
Brachypodium KQJ96747 , KQK08811 , KQK09598 , PNT67394 , PNT72861 , PNT72862 , KQJ99525 , KQJ96751 , KQJ96750 , KQK20612 , KQK20613 , PNT72425 , KQK09735
Barley HORVU3Hr1G071550.3 , HORVU3Hr1G071550.2 , HORVU3Hr1G071550.4 , HORVU3Hr1G088890.2 , HORVU3Hr1G088890.1 , HORVU5Hr1G094380.10 , HORVU5Hr1G094380.13 , HORVU5Hr1G094380.12 , HORVU5Hr1G094380.14 , HORVU4Hr1G073650.5 , HORVU4Hr1G073650.4 , HORVU4Hr1G073650.7 , HORVU4Hr1G073650.6 , HORVU4Hr1G073650.1 , HORVU4Hr1G073650.3 , HORVU4Hr1G073650.2 , HORVU3Hr1G055960.4 , HORVU3Hr1G055960.5 , HORVU3Hr1G055960.1 , HORVU3Hr1G055960.2 , HORVU3Hr1G055960.3 , HORVU7Hr1G056820.1 , HORVU7Hr1G056820.2 , HORVU7Hr1G056820.3 , HORVU5Hr1G094380.9 , HORVU5Hr1G094380.8 , HORVU5Hr1G094380.5 , HORVU5Hr1G094380.4 , HORVU5Hr1G094380.7 , HORVU5Hr1G094380.6 , HORVU5Hr1G094380.1 , HORVU5Hr1G094380.3 , HORVU3Hr1G069590.2 , HORVU3Hr1G069590.3 , HORVU3Hr1G069590.1 , HORVU3Hr1G069590.4
Wheat TraesCS3B02G314600 , TraesCS7D02G270600 , TraesCS7D02G270600 , TraesCS3A02G280800 , TraesCS5A02G383800 , TraesCS5B02G440700 , TraesCS5B02G440700 , TraesCS3D02G386000 , TraesCS7B02G168300 , TraesCS5D02G445100 , TraesCS5D02G445100 , TraesCS3A02G289200 , TraesCS4B02G278100 , TraesCS2A02G089300 , TraesCS3D02G289000 , TraesCS4A02G027700 , TraesCS3A02G229000 , TraesCS3B02G425200 , TraesCS3B02G255600 , TraesCS3D02G227200 , TraesCS3D02G280600 , TraesCS2D02G087400 , TraesCS3D02G385900 , TraesCS7B02G168300 , TraesCS5B02G440700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G239700 receptor-like protein kinase 2 precursor, putative, expressed -
2 Sobic.001G232000 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
3 Sobic.003G419300 xylanase inhibitor, putative, expressed -
4 Sobic.004G112200 no apical meristem protein, putative, expressed -
5 Sobic.002G003400 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.009G058400 expressed protein -
7 Sobic.003G324600 transcription factor-related, putative, expressed -
8 Sobic.008G077900 exostosin family domain containing protein, expressed -
9 Sobic.005G222600 RGH1A, putative, expressed K13457: RPM1, disease resistance protein RPM1
10 Sobic.008G035800 glycosyltransferase, putative, expressed K08238: xyloglucan 6-xylosyltransferase
11 Sobic.009G058600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
12 Sobic.003G419400 xylanase inhibitor, putative, expressed -
13 Sobic.004G214300 AP2-like ethylene-responsive transcription factor PLETHORA 2, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
14 Sobic.006G201000 WRKY37, expressed -
15 Sobic.006G205500 glycosyl hydrolases family 16, putative, expressed -
16 Sobic.009G060700 receptor-like protein kinase 2 precursor, putative, expressed -
17 Sobic.008G062900 H-BTB8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
18 Sobic.004G322000 hypro1, putative, expressed -
19 Sobic.003G001300 ZOS1-05 - C2H2 zinc finger protein, expressed -
20 Sobic.005G219700 Leucine Rich Repeat family protein, expressed -


Gene co-expression network
sample Sobic003G226800 Sobic003G226800 Sobic002G239700 Sobic002G239700 Sobic003G226800--Sobic002G239700 Sobic001G232000 Sobic001G232000 Sobic003G226800--Sobic001G232000 Sobic003G419300 Sobic003G419300 Sobic003G226800--Sobic003G419300 Sobic004G112200 Sobic004G112200 Sobic003G226800--Sobic004G112200 Sobic002G003400 Sobic002G003400 Sobic003G226800--Sobic002G003400 Sobic009G058400 Sobic009G058400 Sobic003G226800--Sobic009G058400 Sobic003G324600 Sobic003G324600 Sobic003G226800--Sobic003G324600 Sobic008G077900 Sobic008G077900 Sobic003G226800--Sobic008G077900 Sobic005G222600 Sobic005G222600 Sobic003G226800--Sobic005G222600 Sobic002G239700--Sobic008G077900 Sobic002G239700--Sobic005G222600 Sobic006G205500 Sobic006G205500 Sobic002G239700--Sobic006G205500 Sobic002G239700--Sobic001G232000 Sobic005G071700 Sobic005G071700 Sobic002G239700--Sobic005G071700 Sobic002G239700--Sobic003G419300 Sobic003G001300 Sobic003G001300 Sobic002G239700--Sobic003G001300 Sobic003G419400 Sobic003G419400 Sobic002G239700--Sobic003G419400 Sobic009G060700 Sobic009G060700 Sobic002G239700--Sobic009G060700 Sobic001G232000--Sobic002G003400 Sobic008G035800 Sobic008G035800 Sobic001G232000--Sobic008G035800 Sobic001G232000--Sobic003G419300 Sobic007G090600 Sobic007G090600 Sobic001G232000--Sobic007G090600 Sobic003G282300 Sobic003G282300 Sobic001G232000--Sobic003G282300 Sobic001G232000--Sobic008G077900 Sobic002G118900 Sobic002G118900 Sobic001G232000--Sobic002G118900 Sobic001G263300 Sobic001G263300 Sobic001G232000--Sobic001G263300 Sobic009G208700 Sobic009G208700 Sobic001G232000--Sobic009G208700 Sobic003G419300--Sobic001G232000 Sobic003G419300--Sobic003G419400 Sobic003G419300--Sobic008G035800 Sobic009G058600 Sobic009G058600 Sobic003G419300--Sobic009G058600 Sobic003G419300--Sobic002G239700 Sobic004G214300 Sobic004G214300 Sobic003G419300--Sobic004G214300 Sobic003G419300--Sobic003G324600 Sobic003G419300--Sobic004G112200 Sobic003G419300--Sobic009G208700 Sobic004G112200--Sobic009G058600 Sobic004G112200--Sobic003G324600 Sobic004G112200--Sobic002G239700 Sobic004G112200--Sobic003G419300 Sobic004G112200--Sobic004G214300 Sobic004G112200--Sobic001G232000 Sobic001G307600 Sobic001G307600 Sobic004G112200--Sobic001G307600 Sobic010G155100 Sobic010G155100 Sobic004G112200--Sobic010G155100 Sobic004G112200--Sobic008G077900 Sobic005G175900 Sobic005G175900 Sobic002G003400--Sobic005G175900 Sobic002G003400--Sobic001G232000 Sobic006G196400 Sobic006G196400 Sobic002G003400--Sobic006G196400 Sobic002G115600 Sobic002G115600 Sobic002G003400--Sobic002G115600 Sobic002G003400--Sobic007G090600 Sobic002G003400--Sobic009G060700 Sobic002G003400--Sobic001G263300 Sobic004G008600 Sobic004G008600 Sobic002G003400--Sobic004G008600 Sobic002G003400--Sobic002G118900 Sobic005G052700 Sobic005G052700 Sobic009G058400--Sobic005G052700 Sobic009G058400--Sobic007G090600 Sobic009G058400--Sobic009G060700 Sobic009G058400--Sobic009G208700 Sobic004G014600 Sobic004G014600 Sobic009G058400--Sobic004G014600 Sobic009G058400--Sobic005G222600 Sobic007G220400 Sobic007G220400 Sobic009G058400--Sobic007G220400 Sobic009G058400--Sobic002G003400 Sobic009G058400--Sobic002G115600 Sobic003G324600--Sobic004G112200 Sobic003G324600--Sobic003G419300 Sobic003G324600--Sobic002G239700 Sobic003G324600--Sobic009G058600 Sobic003G324600--Sobic008G035800 Sobic006G201000 Sobic006G201000 Sobic003G324600--Sobic006G201000 Sobic003G324600--Sobic001G232000 Sobic003G324600--Sobic001G307600 Sobic003G324600--Sobic004G214300 Sobic008G077900--Sobic003G001300 Sobic008G077900--Sobic005G222600 Sobic003G140200 Sobic003G140200 Sobic008G077900--Sobic003G140200 Sobic004G322000 Sobic004G322000 Sobic008G077900--Sobic004G322000 Sobic008G077900--Sobic002G239700 Sobic008G077900--Sobic009G060700 Sobic008G077900--Sobic006G205500 Sobic008G077900--Sobic007G090600 Sobic008G077900--Sobic005G071700 Sobic005G222600--Sobic009G060700 Sobic005G222600--Sobic003G001300 Sobic005G222600--Sobic008G077900 Sobic008G138700 Sobic008G138700 Sobic005G222600--Sobic008G138700 Sobic005G222600--Sobic005G071700 Sobic010G213600 Sobic010G213600 Sobic005G222600--Sobic010G213600 Sobic010G152300 Sobic010G152300 Sobic005G222600--Sobic010G152300 Sobic006G092100 Sobic006G092100 Sobic005G222600--Sobic006G092100 Sobic005G222600--Sobic009G058400
Octagon: transcription factors


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