Gene annotation
Transcriptome id Sobic.008G062900.1
Synonym Sb08g005240
Functional annotation H-BTB8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed
UniProt C5YT83
Pfam -
Panther DB PTHR31060 PTHR31060:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G13690 : PRLI-interacting factor, putative
RAP-DB (Rice) LOC_Os12g08720.1 : H-BTB8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed
MaizeGDB (Corn) Zm00025a025672
Brachypodium KQJ91957
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G062900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G022500 alpha-N-arabinofuranosidase A, putative, expressed K01209: alpha-L-arabinofuranosidase
2 Sobic.001G348800 OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed K09646: serine carboxypeptidase 1
3 Sobic.001G002800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
4 Sobic.006G183900 cytochrome P450, putative, expressed -
5 Sobic.001G503000 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
6 Sobic.006G028400 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
7 Sobic.005G115300 expressed protein -
8 Sobic.007G090472 - -
9 Sobic.003G287200 WRKY23, expressed -
10 Sobic.001G307600 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed -
11 Sobic.003G028300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
12 Sobic.001G163800 No apical meristem protein, putative, expressed -
13 Sobic.006G187200 rhoGAP domain containing protein, expressed -
14 Sobic.004G248500 GDSL-like lipase/acylhydrolase, putative, expressed -
15 Sobic.006G201000 WRKY37, expressed -
16 Sobic.004G312200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@WRKY32, expressed -
17 Sobic.003G203600 aldehyde dehydrogenase, putative, expressed K12355: coniferyl-aldehyde dehydrogenase
18 Sobic.006G229100 receptor-like kinase, putative, expressed -
19 Sobic.003G324600 transcription factor-related, putative, expressed -
20 Sobic.002G271300 NC domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic008G062900 Sobic008G062900 Sobic005G022500 Sobic005G022500 Sobic008G062900--Sobic005G022500 Sobic001G348800 Sobic001G348800 Sobic008G062900--Sobic001G348800 Sobic001G002800 Sobic001G002800 Sobic008G062900--Sobic001G002800 Sobic006G183900 Sobic006G183900 Sobic008G062900--Sobic006G183900 Sobic001G503000 Sobic001G503000 Sobic008G062900--Sobic001G503000 Sobic006G028400 Sobic006G028400 Sobic008G062900--Sobic006G028400 Sobic005G115300 Sobic005G115300 Sobic008G062900--Sobic005G115300 Sobic007G090472 Sobic007G090472 Sobic008G062900--Sobic007G090472 Sobic003G287200 Sobic003G287200 Sobic008G062900--Sobic003G287200 Sobic001G506600 Sobic001G506600 Sobic005G022500--Sobic001G506600 Sobic005G219700 Sobic005G219700 Sobic005G022500--Sobic005G219700 Sobic005G022500--Sobic001G002800 Sobic005G022500--Sobic001G503000 Sobic007G020700 Sobic007G020700 Sobic005G022500--Sobic007G020700 Sobic001G163800 Sobic001G163800 Sobic005G022500--Sobic001G163800 Sobic008G133000 Sobic008G133000 Sobic005G022500--Sobic008G133000 Sobic007G172500 Sobic007G172500 Sobic005G022500--Sobic007G172500 Sobic002G376100 Sobic002G376100 Sobic005G022500--Sobic002G376100 Sobic005G104200 Sobic005G104200 Sobic001G348800--Sobic005G104200 Sobic001G348800--Sobic005G115300 Sobic001G238500 Sobic001G238500 Sobic001G348800--Sobic001G238500 Sobic004G126500 Sobic004G126500 Sobic001G348800--Sobic004G126500 Sobic002G238700 Sobic002G238700 Sobic001G348800--Sobic002G238700 Sobic001G348800--Sobic001G503000 Sobic004G248500 Sobic004G248500 Sobic001G348800--Sobic004G248500 Sobic002G019100 Sobic002G019100 Sobic001G348800--Sobic002G019100 Sobic006G009700 Sobic006G009700 Sobic001G348800--Sobic006G009700 Sobic002G254900 Sobic002G254900 Sobic001G002800--Sobic002G254900 Sobic001G002800--Sobic001G503000 Sobic001G002800--Sobic007G090472 Sobic001G002800--Sobic003G287200 Sobic005G107500 Sobic005G107500 Sobic001G002800--Sobic005G107500 Sobic006G209000 Sobic006G209000 Sobic001G002800--Sobic006G209000 Sobic010G096700 Sobic010G096700 Sobic001G002800--Sobic010G096700 Sobic007G073000 Sobic007G073000 Sobic001G002800--Sobic007G073000 Sobic001G002800--Sobic001G506600 Sobic006G183900--Sobic003G287200 Sobic007G109600 Sobic007G109600 Sobic006G183900--Sobic007G109600 Sobic006G183900--Sobic006G028400 Sobic006G183900--Sobic007G090472 Sobic008G034700 Sobic008G034700 Sobic006G183900--Sobic008G034700 Sobic006G183900--Sobic004G248500 Sobic007G170300 Sobic007G170300 Sobic006G183900--Sobic007G170300 Sobic002G365600 Sobic002G365600 Sobic006G183900--Sobic002G365600 Sobic002G365500 Sobic002G365500 Sobic006G183900--Sobic002G365500 Sobic001G503000--Sobic001G506600 Sobic001G503000--Sobic010G096700 Sobic001G503000--Sobic005G115300 Sobic003G215300 Sobic003G215300 Sobic001G503000--Sobic003G215300 Sobic001G503000--Sobic005G104200 Sobic001G503000--Sobic006G209000 Sobic008G138900 Sobic008G138900 Sobic001G503000--Sobic008G138900 Sobic010G082000 Sobic010G082000 Sobic001G503000--Sobic010G082000 Sobic004G322000 Sobic004G322000 Sobic001G503000--Sobic004G322000 Sobic006G028400--Sobic006G183900 Sobic003G203600 Sobic003G203600 Sobic006G028400--Sobic003G203600 Sobic006G028400--Sobic007G170300 Sobic006G028400--Sobic007G109600 Sobic007G178900 Sobic007G178900 Sobic006G028400--Sobic007G178900 Sobic002G185800 Sobic002G185800 Sobic006G028400--Sobic002G185800 Sobic006G028400--Sobic002G365500 Sobic004G071000 Sobic004G071000 Sobic006G028400--Sobic004G071000 Sobic002G365550 Sobic002G365550 Sobic006G028400--Sobic002G365550 Sobic005G115300--Sobic001G503000 Sobic004G312200 Sobic004G312200 Sobic005G115300--Sobic004G312200 Sobic005G115300--Sobic004G248500 Sobic005G115300--Sobic005G104200 Sobic005G115300--Sobic001G506600 Sobic006G229100 Sobic006G229100 Sobic005G115300--Sobic006G229100 Sobic005G115300--Sobic001G348800 Sobic005G115300--Sobic010G096700 Sobic005G115300--Sobic010G082000 Sobic010G028100 Sobic010G028100 Sobic007G090472--Sobic010G028100 Sobic007G090472--Sobic007G073000 Sobic001G360500 Sobic001G360500 Sobic007G090472--Sobic001G360500 Sobic007G090472--Sobic010G082000 Sobic006G092700 Sobic006G092700 Sobic007G090472--Sobic006G092700 Sobic006G135300 Sobic006G135300 Sobic007G090472--Sobic006G135300 Sobic007G090472--Sobic006G229100 Sobic007G090472--Sobic001G503000 Sobic007G090472--Sobic003G215300 Sobic003G287200--Sobic006G183900 Sobic003G287200--Sobic006G229100 Sobic003G287200--Sobic001G002800 Sobic003G287200--Sobic001G360500 Sobic003G287200--Sobic001G503000 Sobic003G287200--Sobic007G090472 Sobic003G287200--Sobic010G096700 Sobic003G287200--Sobic007G170300 Sobic006G117500 Sobic006G117500 Sobic003G287200--Sobic006G117500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.