Gene annotation
Transcriptome id Sobic.006G187200.1
Synonym Sb06g026110
Functional annotation rhoGAP domain containing protein, expressed
UniProt C5YEF8
Pfam PF00786 PF00620
Panther DB PTHR23177 PTHR23177:SF22
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0007165; signal transduction


Orthologs (automatic annotation)
TAIR AT2G46710 : Rho GTPase activating protein with PAK-box/P21-Rho-binding domain
RAP-DB (Rice) LOC_Os04g48790.1 : rhoGAP domain containing protein, expressed
MaizeGDB (Corn) Zm00025a010122 , Zm00025a021511
Brachypodium KQJ84161
Barley HORVU6Hr1G065800.11 , HORVU6Hr1G065800.10 , HORVU6Hr1G065800.12 , HORVU2Hr1G094320.1 , HORVU2Hr1G094320.2 , HORVU2Hr1G094320.3 , HORVU6Hr1G065800.5 , HORVU6Hr1G065800.4 , HORVU6Hr1G065800.7 , HORVU6Hr1G065800.6 , HORVU6Hr1G065800.1 , HORVU6Hr1G065800.3 , HORVU6Hr1G065800.2 , HORVU6Hr1G065800.9 , HORVU6Hr1G065800.8
Wheat TraesCS2B02G415300 , TraesCS6D02G239200 , TraesCS2A02G397000 , TraesCS6A02G257900 , TraesCS6A02G257900 , TraesCS6B02G267300 , TraesCS2D02G394800
Populus -


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cDNA sequences
Sobic.006G187200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G062900 H-BTB8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
2 Sobic.003G083600 DNA binding protein, putative, expressed -
3 Sobic.006G160000 leucine-rich repeat family protein, putative, expressed -
4 Sobic.001G348800 OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed K09646: serine carboxypeptidase 1
5 Sobic.006G078100 FAD binding domain containing protein, expressed -
6 Sobic.001G460400 expressed protein -
7 Sobic.001G002800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
8 Sobic.007G172500 zinc finger family protein, putative, expressed -
9 Sobic.001G227850 - -
10 Sobic.004G339800 phosphate transporter 1, putative, expressed -
11 Sobic.002G153100 "bZIP, coexpress with genes associated with the hormonesignaling pathway, anther develop-ment in Arabidopsis"(PubMedID : 28944535)@transcription factor, putative, expressed K14431: transcription factor TGA
12 Sobic.005G075400 CHASE domain containing protein, expressed -
13 Sobic.007G073000 - -
14 Sobic.001G503000 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
15 Sobic.010G096700 leaf senescence related protein, putative, expressed -
16 Sobic.002G254900 membrane protein, putative, expressed -
17 Sobic.005G177400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
18 Sobic.002G271300 NC domain-containing protein, putative, expressed -
19 Sobic.005G022500 alpha-N-arabinofuranosidase A, putative, expressed K01209: alpha-L-arabinofuranosidase
20 Sobic.003G028300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein


Gene co-expression network
sample Sobic006G187200 Sobic006G187200 Sobic008G062900 Sobic008G062900 Sobic006G187200--Sobic008G062900 Sobic003G083600 Sobic003G083600 Sobic006G187200--Sobic003G083600 Sobic006G160000 Sobic006G160000 Sobic006G187200--Sobic006G160000 Sobic001G348800 Sobic001G348800 Sobic006G187200--Sobic001G348800 Sobic006G078100 Sobic006G078100 Sobic006G187200--Sobic006G078100 Sobic001G460400 Sobic001G460400 Sobic006G187200--Sobic001G460400 Sobic001G002800 Sobic001G002800 Sobic006G187200--Sobic001G002800 Sobic007G172500 Sobic007G172500 Sobic006G187200--Sobic007G172500 Sobic001G227850 Sobic001G227850 Sobic006G187200--Sobic001G227850 Sobic005G022500 Sobic005G022500 Sobic008G062900--Sobic005G022500 Sobic008G062900--Sobic001G348800 Sobic008G062900--Sobic001G002800 Sobic006G183900 Sobic006G183900 Sobic008G062900--Sobic006G183900 Sobic001G503000 Sobic001G503000 Sobic008G062900--Sobic001G503000 Sobic006G028400 Sobic006G028400 Sobic008G062900--Sobic006G028400 Sobic005G115300 Sobic005G115300 Sobic008G062900--Sobic005G115300 Sobic007G090472 Sobic007G090472 Sobic008G062900--Sobic007G090472 Sobic003G287200 Sobic003G287200 Sobic008G062900--Sobic003G287200 Sobic005G231300 Sobic005G231300 Sobic003G083600--Sobic005G231300 Sobic001G514300 Sobic001G514300 Sobic003G083600--Sobic001G514300 Sobic009G079900 Sobic009G079900 Sobic003G083600--Sobic009G079900 Sobic008G099100 Sobic008G099100 Sobic003G083600--Sobic008G099100 Sobic002G029600 Sobic002G029600 Sobic003G083600--Sobic002G029600 Sobic001G169400 Sobic001G169400 Sobic003G083600--Sobic001G169400 Sobic003G382200 Sobic003G382200 Sobic003G083600--Sobic003G382200 Sobic001G274400 Sobic001G274400 Sobic003G083600--Sobic001G274400 Sobic008G014700 Sobic008G014700 Sobic003G083600--Sobic008G014700 Sobic006G160000--Sobic006G187200 Sobic002G153100 Sobic002G153100 Sobic006G160000--Sobic002G153100 Sobic003G086500 Sobic003G086500 Sobic006G160000--Sobic003G086500 Sobic004G079700 Sobic004G079700 Sobic006G160000--Sobic004G079700 Sobic006G109500 Sobic006G109500 Sobic006G160000--Sobic006G109500 Sobic006G018300 Sobic006G018300 Sobic006G160000--Sobic006G018300 Sobic001G203700 Sobic001G203700 Sobic006G160000--Sobic001G203700 Sobic006G160000--Sobic008G062900 Sobic009G079100 Sobic009G079100 Sobic006G160000--Sobic009G079100 Sobic005G104200 Sobic005G104200 Sobic001G348800--Sobic005G104200 Sobic001G348800--Sobic005G115300 Sobic001G238500 Sobic001G238500 Sobic001G348800--Sobic001G238500 Sobic004G126500 Sobic004G126500 Sobic001G348800--Sobic004G126500 Sobic002G238700 Sobic002G238700 Sobic001G348800--Sobic002G238700 Sobic001G348800--Sobic001G503000 Sobic004G248500 Sobic004G248500 Sobic001G348800--Sobic004G248500 Sobic002G019100 Sobic002G019100 Sobic001G348800--Sobic002G019100 Sobic006G009700 Sobic006G009700 Sobic001G348800--Sobic006G009700 Sobic008G147900 Sobic008G147900 Sobic006G078100--Sobic008G147900 Sobic003G227700 Sobic003G227700 Sobic006G078100--Sobic003G227700 Sobic010G097200 Sobic010G097200 Sobic006G078100--Sobic010G097200 Sobic003G000100 Sobic003G000100 Sobic006G078100--Sobic003G000100 Sobic005G202300 Sobic005G202300 Sobic006G078100--Sobic005G202300 Sobic006G003100 Sobic006G003100 Sobic006G078100--Sobic006G003100 Sobic006G106900 Sobic006G106900 Sobic006G078100--Sobic006G106900 Sobic002G385500 Sobic002G385500 Sobic006G078100--Sobic002G385500 Sobic010G071400 Sobic010G071400 Sobic006G078100--Sobic010G071400 Sobic001G360700 Sobic001G360700 Sobic001G460400--Sobic001G360700 Sobic001G067800 Sobic001G067800 Sobic001G460400--Sobic001G067800 Sobic004G161900 Sobic004G161900 Sobic001G460400--Sobic004G161900 Sobic003G017601 Sobic003G017601 Sobic001G460400--Sobic003G017601 Sobic002G207200 Sobic002G207200 Sobic001G460400--Sobic002G207200 Sobic001G460400--Sobic001G227850 Sobic009G246700 Sobic009G246700 Sobic001G460400--Sobic009G246700 Sobic008G037900 Sobic008G037900 Sobic001G460400--Sobic008G037900 Sobic010G218300 Sobic010G218300 Sobic001G460400--Sobic010G218300 Sobic002G254900 Sobic002G254900 Sobic001G002800--Sobic002G254900 Sobic001G002800--Sobic001G503000 Sobic001G002800--Sobic007G090472 Sobic001G002800--Sobic003G287200 Sobic005G107500 Sobic005G107500 Sobic001G002800--Sobic005G107500 Sobic006G209000 Sobic006G209000 Sobic001G002800--Sobic006G209000 Sobic010G096700 Sobic010G096700 Sobic001G002800--Sobic010G096700 Sobic007G073000 Sobic007G073000 Sobic001G002800--Sobic007G073000 Sobic001G506600 Sobic001G506600 Sobic001G002800--Sobic001G506600 Sobic007G172500--Sobic001G238500 Sobic007G172500--Sobic004G126500 Sobic007G172500--Sobic006G009700 Sobic004G312500 Sobic004G312500 Sobic007G172500--Sobic004G312500 Sobic007G172500--Sobic005G104200 Sobic006G108300 Sobic006G108300 Sobic007G172500--Sobic006G108300 Sobic007G020700 Sobic007G020700 Sobic007G172500--Sobic007G020700 Sobic007G172500--Sobic005G022500 Sobic002G411000 Sobic002G411000 Sobic007G172500--Sobic002G411000 Sobic008G191400 Sobic008G191400 Sobic001G227850--Sobic008G191400 Sobic003G319400 Sobic003G319400 Sobic001G227850--Sobic003G319400 Sobic001G299100 Sobic001G299100 Sobic001G227850--Sobic001G299100 Sobic010G031700 Sobic010G031700 Sobic001G227850--Sobic010G031700 Sobic001G227850--Sobic005G202300 Sobic001G227850--Sobic006G003100 Sobic006G135300 Sobic006G135300 Sobic001G227850--Sobic006G135300 Sobic010G152400 Sobic010G152400 Sobic001G227850--Sobic010G152400 Sobic001G227850--Sobic010G097200
Octagon: transcription factors


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