Gene annotation
Transcriptome id Sobic.005G022500.1,Sobic.005G022500.2
Synonym ATASD1, ARAF1, ASD1, Sb05g001900, ARAF
Functional annotation alpha-N-arabinofuranosidase A, putative, expressed
UniProt A0A1B6PPR6 , A0A1B6PPS8
Pfam PF06964
Panther DB PTHR31776 PTHR31776:SF0
NCBI CDD -
KEGG Orthology K01209; alpha-L-arabinofuranosidase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G10740 : alpha-L-arabinofuranosidase 1
RAP-DB (Rice) LOC_Os11g03730.3,LOC_Os11g03730.2 : alpha-N-arabinofuranosidase A, putative, expressed
MaizeGDB (Corn) Zm00025a028968 , Zm00025a000835 , Zm00025a033391 , Zm00025a038411 , Zm00025a029540
Brachypodium KQJ89534 , KQJ89533 , KQJ92445 , KQJ92444
Barley HORVU5Hr1G045150.20 , HORVU3Hr1G113160.11 , HORVU3Hr1G113160.10 , HORVU5Hr1G045150.18 , HORVU3Hr1G113160.5 , HORVU3Hr1G113160.4 , HORVU3Hr1G113160.7 , HORVU3Hr1G113160.6 , HORVU3Hr1G113160.1 , HORVU3Hr1G113160.3 , HORVU3Hr1G113160.2 , HORVU3Hr1G113160.9 , HORVU3Hr1G113160.8 , HORVU5Hr1G045150.8 , HORVU5Hr1G045150.9 , HORVU5Hr1G045150.6 , HORVU5Hr1G045150.7 , HORVU5Hr1G045150.4 , HORVU5Hr1G045150.2 , HORVU5Hr1G045150.3 , HORVU5Hr1G045150.1 , HORVU5Hr1G045150.14 , HORVU5Hr1G045150.15 , HORVU5Hr1G045150.16 , HORVU5Hr1G045150.17 , HORVU5Hr1G045150.10 , HORVU5Hr1G045150.11 , HORVU5Hr1G045150.12 , HORVU5Hr1G045150.13 , HORVU5Hr1G045150.19 , HORVU4Hr1G026720.3 , HORVU4Hr1G026720.2 , HORVU4Hr1G026720.1 , HORVU4Hr1G026720.6 , HORVU4Hr1G026720.5 , HORVU4Hr1G026720.4
Wheat TraesCS5A02G138400 , TraesCS5A02G138400 , TraesCS4A02G188300 , TraesCS4A02G188300 , TraesCS4A02G188300 , TraesCS4B02G127600 , TraesCS4B02G127600 , TraesCS4B02G127600 , TraesCS5B02G138700 , TraesCS5B02G138700 , TraesCS5D02G152100 , TraesCS5D02G152100 , TraesCS4D02G125100 , TraesCS4D02G125100 , TraesCS4D02G125100
Populus -


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cDNA sequences
Sobic.005G022500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G506600 exostosin family domain containing protein, expressed -
2 Sobic.005G219700 Leucine Rich Repeat family protein, expressed -
3 Sobic.001G002800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
4 Sobic.001G503000 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
5 Sobic.007G020700 ACT domain containing protein, expressed -
6 Sobic.001G163800 No apical meristem protein, putative, expressed -
7 Sobic.008G133000 expressed protein -
8 Sobic.007G172500 zinc finger family protein, putative, expressed -
9 Sobic.002G376100 STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed -
10 Sobic.002G254900 membrane protein, putative, expressed -
11 Sobic.005G104200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.002G029600 CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
13 Sobic.008G062900 H-BTB8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
14 Sobic.001G348800 OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed K09646: serine carboxypeptidase 1
15 Sobic.010G096700 leaf senescence related protein, putative, expressed -
16 Sobic.005G222600 RGH1A, putative, expressed K13457: RPM1, disease resistance protein RPM1
17 Sobic.005G071900 expressed protein K13457: RPM1, disease resistance protein RPM1
18 Sobic.003G079100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@muconate cycloisomerase, putative, expressed -
19 Sobic.005G115300 expressed protein -
20 Sobic.001G471800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein-related, putative, expressed -


Gene co-expression network
sample Sobic005G022500 Sobic005G022500 Sobic001G506600 Sobic001G506600 Sobic005G022500--Sobic001G506600 Sobic005G219700 Sobic005G219700 Sobic005G022500--Sobic005G219700 Sobic001G002800 Sobic001G002800 Sobic005G022500--Sobic001G002800 Sobic001G503000 Sobic001G503000 Sobic005G022500--Sobic001G503000 Sobic007G020700 Sobic007G020700 Sobic005G022500--Sobic007G020700 Sobic001G163800 Sobic001G163800 Sobic005G022500--Sobic001G163800 Sobic008G133000 Sobic008G133000 Sobic005G022500--Sobic008G133000 Sobic007G172500 Sobic007G172500 Sobic005G022500--Sobic007G172500 Sobic002G376100 Sobic002G376100 Sobic005G022500--Sobic002G376100 Sobic010G096700 Sobic010G096700 Sobic001G506600--Sobic010G096700 Sobic001G506600--Sobic001G503000 Sobic005G104200 Sobic005G104200 Sobic001G506600--Sobic005G104200 Sobic002G029600 Sobic002G029600 Sobic001G506600--Sobic002G029600 Sobic002G411000 Sobic002G411000 Sobic001G506600--Sobic002G411000 Sobic002G019100 Sobic002G019100 Sobic001G506600--Sobic002G019100 Sobic004G322000 Sobic004G322000 Sobic001G506600--Sobic004G322000 Sobic006G209000 Sobic006G209000 Sobic001G506600--Sobic006G209000 Sobic003G215300 Sobic003G215300 Sobic001G506600--Sobic003G215300 Sobic003G001300 Sobic003G001300 Sobic005G219700--Sobic003G001300 Sobic002G003400 Sobic002G003400 Sobic005G219700--Sobic002G003400 Sobic009G060700 Sobic009G060700 Sobic005G219700--Sobic009G060700 Sobic006G224500 Sobic006G224500 Sobic005G219700--Sobic006G224500 Sobic008G077900 Sobic008G077900 Sobic005G219700--Sobic008G077900 Sobic005G219700--Sobic004G322000 Sobic005G219700--Sobic001G506600 Sobic005G219700--Sobic007G020700 Sobic005G219700--Sobic002G029600 Sobic002G254900 Sobic002G254900 Sobic001G002800--Sobic002G254900 Sobic001G002800--Sobic001G503000 Sobic007G090472 Sobic007G090472 Sobic001G002800--Sobic007G090472 Sobic003G287200 Sobic003G287200 Sobic001G002800--Sobic003G287200 Sobic005G107500 Sobic005G107500 Sobic001G002800--Sobic005G107500 Sobic001G002800--Sobic006G209000 Sobic001G002800--Sobic010G096700 Sobic007G073000 Sobic007G073000 Sobic001G002800--Sobic007G073000 Sobic001G002800--Sobic001G506600 Sobic001G503000--Sobic001G506600 Sobic001G503000--Sobic010G096700 Sobic005G115300 Sobic005G115300 Sobic001G503000--Sobic005G115300 Sobic001G503000--Sobic003G215300 Sobic001G503000--Sobic005G104200 Sobic001G503000--Sobic006G209000 Sobic008G138900 Sobic008G138900 Sobic001G503000--Sobic008G138900 Sobic010G082000 Sobic010G082000 Sobic001G503000--Sobic010G082000 Sobic001G503000--Sobic004G322000 Sobic007G020700--Sobic002G029600 Sobic005G071900 Sobic005G071900 Sobic007G020700--Sobic005G071900 Sobic006G009700 Sobic006G009700 Sobic007G020700--Sobic006G009700 Sobic004G312500 Sobic004G312500 Sobic007G020700--Sobic004G312500 Sobic007G020700--Sobic009G060700 Sobic007G020700--Sobic002G019100 Sobic006G108300 Sobic006G108300 Sobic007G020700--Sobic006G108300 Sobic009G079900 Sobic009G079900 Sobic007G020700--Sobic009G079900 Sobic003G079100 Sobic003G079100 Sobic007G020700--Sobic003G079100 Sobic001G163800--Sobic005G022500 Sobic004G193500 Sobic004G193500 Sobic001G163800--Sobic004G193500 Sobic001G250100 Sobic001G250100 Sobic001G163800--Sobic001G250100 Sobic001G163800--Sobic003G287200 Sobic001G163800--Sobic008G133000 Sobic001G163800--Sobic001G002800 Sobic001G163800--Sobic001G503000 Sobic001G471800 Sobic001G471800 Sobic001G163800--Sobic001G471800 Sobic009G250100 Sobic009G250100 Sobic001G163800--Sobic009G250100 Sobic008G133000--Sobic001G503000 Sobic008G133000--Sobic005G104200 Sobic004G248500 Sobic004G248500 Sobic008G133000--Sobic004G248500 Sobic008G133000--Sobic005G115300 Sobic001G131001 Sobic001G131001 Sobic008G133000--Sobic001G131001 Sobic008G133000--Sobic001G506600 Sobic006G117500 Sobic006G117500 Sobic008G133000--Sobic006G117500 Sobic001G348800 Sobic001G348800 Sobic008G133000--Sobic001G348800 Sobic008G133000--Sobic001G002800 Sobic001G238500 Sobic001G238500 Sobic007G172500--Sobic001G238500 Sobic004G126500 Sobic004G126500 Sobic007G172500--Sobic004G126500 Sobic007G172500--Sobic006G009700 Sobic007G172500--Sobic004G312500 Sobic007G172500--Sobic005G104200 Sobic007G172500--Sobic006G108300 Sobic007G172500--Sobic007G020700 Sobic007G172500--Sobic005G022500 Sobic007G172500--Sobic002G411000 Sobic007G154100 Sobic007G154100 Sobic002G376100--Sobic007G154100 Sobic004G009200 Sobic004G009200 Sobic002G376100--Sobic004G009200 Sobic002G391900 Sobic002G391900 Sobic002G376100--Sobic002G391900 Sobic010G152500 Sobic010G152500 Sobic002G376100--Sobic010G152500 Sobic003G382200 Sobic003G382200 Sobic002G376100--Sobic003G382200 Sobic005G066300 Sobic005G066300 Sobic002G376100--Sobic005G066300 Sobic009G106100 Sobic009G106100 Sobic002G376100--Sobic009G106100 Sobic002G376100--Sobic005G071900 Sobic002G376100--Sobic006G108300
Octagon: transcription factors


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