Gene annotation
Transcriptome id Sobic.007G172500.1
Synonym Sb07g024480
Functional annotation zinc finger family protein, putative, expressed
UniProt A0A1B6PI96
Pfam PF01529
Panther DB PTHR22883 PTHR22883:SF65
NCBI CDD KOG1311; DHHC-type Zn-finger proteins
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G22180 : DHHC-type zinc finger family protein
RAP-DB (Rice) LOC_Os09g38970.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a013518 , Zm00025a005635 , Zm00025a045908
Brachypodium KQJ99329 , KQJ91503 , KQJ99332 , KQJ99330 , KQJ99331 , PNT68567 , PNT68566 , PNT68565 , PNT68564
Barley HORVU7Hr1G058360.19 , HORVU7Hr1G058360.18 , HORVU7Hr1G058360.11 , HORVU7Hr1G058360.10 , HORVU7Hr1G058360.13 , HORVU7Hr1G058360.12 , HORVU7Hr1G058360.15 , HORVU7Hr1G058360.14 , HORVU7Hr1G058360.17 , HORVU7Hr1G058360.16 , HORVU5Hr1G090020.10 , HORVU5Hr1G090020.11 , HORVU5Hr1G090020.1 , HORVU5Hr1G090020.2 , HORVU5Hr1G090020.3 , HORVU5Hr1G090020.4 , HORVU5Hr1G090020.5 , HORVU5Hr1G090020.6 , HORVU5Hr1G090020.7 , HORVU5Hr1G090020.8 , HORVU5Hr1G090020.9 , HORVU7Hr1G058360.9 , HORVU7Hr1G058360.8 , HORVU7Hr1G058360.5 , HORVU7Hr1G058360.7 , HORVU7Hr1G058360.6 , HORVU7Hr1G058360.1 , HORVU7Hr1G058360.3 , HORVU7Hr1G058360.20 , HORVU7Hr1G058360.21
Wheat TraesCS5D02G375800 , TraesCS5A02G366200 , TraesCS7A02G277000 , TraesCS7D02G277000 , TraesCS7D02G277000 , TraesCS7B02G174700 , TraesCS5B02G368600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G238500 similar to Putative uncharacterized protein(PubMedID : 29862293)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed K13691: pathogen-inducible salicylic acid glucosyltransferase
2 Sobic.004G126500 - -
3 Sobic.006G009700 expressed protein -
4 Sobic.004G312500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@nitrate reductase, putative, expressed K10534: nitrate reductase (NAD(P)H)
5 Sobic.005G104200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.006G108300 expressed protein -
7 Sobic.007G020700 ACT domain containing protein, expressed -
8 Sobic.005G022500 alpha-N-arabinofuranosidase A, putative, expressed K01209: alpha-L-arabinofuranosidase
9 Sobic.002G411000 AP2 domain containing protein, expressed -
10 Sobic.005G071900 expressed protein K13457: RPM1, disease resistance protein RPM1
11 Sobic.002G238700 - -
12 Sobic.002G019100 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
13 Sobic.005G066500 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
14 Sobic.009G015166 - -
15 Sobic.007G041600 - -
16 Sobic.005G066300 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
17 Sobic.003G079100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@muconate cycloisomerase, putative, expressed -
18 Sobic.002G081850 - -
19 Sobic.001G348800 OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed K09646: serine carboxypeptidase 1
20 Sobic.009G079900 endoglucanase precursor, putative, expressed -


Gene co-expression network
sample Sobic007G172500 Sobic007G172500 Sobic001G238500 Sobic001G238500 Sobic007G172500--Sobic001G238500 Sobic004G126500 Sobic004G126500 Sobic007G172500--Sobic004G126500 Sobic006G009700 Sobic006G009700 Sobic007G172500--Sobic006G009700 Sobic004G312500 Sobic004G312500 Sobic007G172500--Sobic004G312500 Sobic005G104200 Sobic005G104200 Sobic007G172500--Sobic005G104200 Sobic006G108300 Sobic006G108300 Sobic007G172500--Sobic006G108300 Sobic007G020700 Sobic007G020700 Sobic007G172500--Sobic007G020700 Sobic005G022500 Sobic005G022500 Sobic007G172500--Sobic005G022500 Sobic002G411000 Sobic002G411000 Sobic007G172500--Sobic002G411000 Sobic001G238500--Sobic004G126500 Sobic001G238500--Sobic005G104200 Sobic001G238500--Sobic006G009700 Sobic002G238700 Sobic002G238700 Sobic001G238500--Sobic002G238700 Sobic002G019100 Sobic002G019100 Sobic001G238500--Sobic002G019100 Sobic001G348800 Sobic001G348800 Sobic001G238500--Sobic001G348800 Sobic001G238500--Sobic002G411000 Sobic009G015166 Sobic009G015166 Sobic001G238500--Sobic009G015166 Sobic001G506700 Sobic001G506700 Sobic001G238500--Sobic001G506700 Sobic004G126500--Sobic001G238500 Sobic004G126500--Sobic006G009700 Sobic004G126500--Sobic005G104200 Sobic004G126500--Sobic002G238700 Sobic004G126500--Sobic002G019100 Sobic004G126500--Sobic001G348800 Sobic008G084900 Sobic008G084900 Sobic004G126500--Sobic008G084900 Sobic004G126500--Sobic004G312500 Sobic004G126500--Sobic009G015166 Sobic008G138700 Sobic008G138700 Sobic006G009700--Sobic008G138700 Sobic006G009700--Sobic004G312500 Sobic005G071900 Sobic005G071900 Sobic006G009700--Sobic005G071900 Sobic006G009700--Sobic002G019100 Sobic006G009700--Sobic004G126500 Sobic006G009700--Sobic001G238500 Sobic005G066500 Sobic005G066500 Sobic006G009700--Sobic005G066500 Sobic006G009700--Sobic002G238700 Sobic006G009700--Sobic006G108300 Sobic004G312500--Sobic005G071900 Sobic004G312500--Sobic006G108300 Sobic005G110511 Sobic005G110511 Sobic004G312500--Sobic005G110511 Sobic004G312500--Sobic006G009700 Sobic007G154100 Sobic007G154100 Sobic004G312500--Sobic007G154100 Sobic004G312500--Sobic005G066500 Sobic004G312500--Sobic008G138700 Sobic005G065700 Sobic005G065700 Sobic004G312500--Sobic005G065700 Sobic004G312500--Sobic002G411000 Sobic005G104200--Sobic001G238500 Sobic001G506600 Sobic001G506600 Sobic005G104200--Sobic001G506600 Sobic005G104200--Sobic002G019100 Sobic001G503000 Sobic001G503000 Sobic005G104200--Sobic001G503000 Sobic006G117500 Sobic006G117500 Sobic005G104200--Sobic006G117500 Sobic005G104200--Sobic004G126500 Sobic005G104200--Sobic006G009700 Sobic005G104200--Sobic002G411000 Sobic005G104200--Sobic001G348800 Sobic006G108300--Sobic004G312500 Sobic006G108300--Sobic005G071900 Sobic006G108300--Sobic007G154100 Sobic006G108300--Sobic002G411000 Sobic006G108300--Sobic006G009700 Sobic003G079100 Sobic003G079100 Sobic006G108300--Sobic003G079100 Sobic006G209000 Sobic006G209000 Sobic006G108300--Sobic006G209000 Sobic002G029600 Sobic002G029600 Sobic006G108300--Sobic002G029600 Sobic006G108300--Sobic002G019100 Sobic007G020700--Sobic002G029600 Sobic007G020700--Sobic005G071900 Sobic007G020700--Sobic006G009700 Sobic007G020700--Sobic004G312500 Sobic009G060700 Sobic009G060700 Sobic007G020700--Sobic009G060700 Sobic007G020700--Sobic002G019100 Sobic007G020700--Sobic006G108300 Sobic009G079900 Sobic009G079900 Sobic007G020700--Sobic009G079900 Sobic007G020700--Sobic003G079100 Sobic005G022500--Sobic001G506600 Sobic005G219700 Sobic005G219700 Sobic005G022500--Sobic005G219700 Sobic001G002800 Sobic001G002800 Sobic005G022500--Sobic001G002800 Sobic005G022500--Sobic001G503000 Sobic005G022500--Sobic007G020700 Sobic001G163800 Sobic001G163800 Sobic005G022500--Sobic001G163800 Sobic008G133000 Sobic008G133000 Sobic005G022500--Sobic008G133000 Sobic005G022500--Sobic007G172500 Sobic002G376100 Sobic002G376100 Sobic005G022500--Sobic002G376100 Sobic005G066300 Sobic005G066300 Sobic002G411000--Sobic005G066300 Sobic002G411000--Sobic006G108300 Sobic002G411000--Sobic004G312500 Sobic002G411000--Sobic005G071900 Sobic002G411000--Sobic006G009700 Sobic002G411000--Sobic005G066500 Sobic002G411000--Sobic001G506700 Sobic002G411000--Sobic001G506600 Sobic010G274400 Sobic010G274400 Sobic002G411000--Sobic010G274400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.