Gene annotation
Transcriptome id Sobic.003G287200.1
Synonym WRKY56, Sb03g033780, ATWRKY56
Functional annotation WRKY23, expressed
UniProt C5XJ41
Pfam PF03106
Panther DB PTHR31221 PTHR31221:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G41570 : WRKY DNA-binding protein 24
RAP-DB (Rice) LOC_Os01g53260.1 : WRKY23, expressed
MaizeGDB (Corn) Zm00025a039749 , Zm00025a044883 , Zm00025a044278 , Zm00025a038003 , Zm00025a027025 , Zm00025a040097
Brachypodium KQK10385 , KQK09603 , KQK05263
Barley HORVU3Hr1G088200.3 , HORVU3Hr1G088200.1 , HORVU3Hr1G088200.6 , HORVU3Hr1G088200.5 , HORVU3Hr1G088200.4 , HORVU3Hr1G088200.9 , HORVU3Hr1G088200.8 , HORVU1Hr1G081570.1 , HORVU1Hr1G081570.2 , HORVU1Hr1G081570.4 , HORVU3Hr1G069660.1 , HORVU3Hr1G069660.2 , HORVU2Hr1G001780.1 , HORVU2Hr1G001780.3
Wheat TraesCS3D02G341100 , TraesCS3A02G347500 , TraesCS1D02G351600 , TraesCS2B02G010500 , TraesCS2A02G011000 , TraesCS3B02G379200 , TraesCS3A02G280400 , TraesCS1A02G348600 , TraesCS3D02G280200 , TraesCS2D02G011700 , TraesCS3B02G379200 , TraesCS6D02G074200 , TraesCS1B02G363200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G183900 cytochrome P450, putative, expressed -
2 Sobic.006G229100 receptor-like kinase, putative, expressed -
3 Sobic.001G002800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
4 Sobic.001G360500 peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.001G503000 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
6 Sobic.007G090472 - -
7 Sobic.010G096700 leaf senescence related protein, putative, expressed -
8 Sobic.007G170300 beta,beta-carotene 9,10-dioxygenase, putative, expressed K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase
9 Sobic.006G117500 polygalacturonase inhibitor 1 precursor, putative, expressed -
10 Sobic.005G177400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
11 Sobic.004G126700 glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
12 Sobic.005G115300 expressed protein -
13 Sobic.002G163200 - -
14 Sobic.002G254900 membrane protein, putative, expressed -
15 Sobic.004G248500 GDSL-like lipase/acylhydrolase, putative, expressed -
16 Sobic.008G133000 expressed protein -
17 Sobic.007G073000 - -
18 Sobic.001G506600 exostosin family domain containing protein, expressed -
19 Sobic.010G096400 proteins of unknown function domain containing protein, expressed -
20 Sobic.010G082000 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase


Gene co-expression network
sample Sobic003G287200 Sobic003G287200 Sobic006G183900 Sobic006G183900 Sobic003G287200--Sobic006G183900 Sobic006G229100 Sobic006G229100 Sobic003G287200--Sobic006G229100 Sobic001G002800 Sobic001G002800 Sobic003G287200--Sobic001G002800 Sobic001G360500 Sobic001G360500 Sobic003G287200--Sobic001G360500 Sobic001G503000 Sobic001G503000 Sobic003G287200--Sobic001G503000 Sobic007G090472 Sobic007G090472 Sobic003G287200--Sobic007G090472 Sobic010G096700 Sobic010G096700 Sobic003G287200--Sobic010G096700 Sobic007G170300 Sobic007G170300 Sobic003G287200--Sobic007G170300 Sobic006G117500 Sobic006G117500 Sobic003G287200--Sobic006G117500 Sobic006G183900--Sobic003G287200 Sobic007G109600 Sobic007G109600 Sobic006G183900--Sobic007G109600 Sobic006G028400 Sobic006G028400 Sobic006G183900--Sobic006G028400 Sobic006G183900--Sobic007G090472 Sobic008G034700 Sobic008G034700 Sobic006G183900--Sobic008G034700 Sobic004G248500 Sobic004G248500 Sobic006G183900--Sobic004G248500 Sobic006G183900--Sobic007G170300 Sobic002G365600 Sobic002G365600 Sobic006G183900--Sobic002G365600 Sobic002G365500 Sobic002G365500 Sobic006G183900--Sobic002G365500 Sobic006G229100--Sobic007G090472 Sobic010G082000 Sobic010G082000 Sobic006G229100--Sobic010G082000 Sobic005G115300 Sobic005G115300 Sobic006G229100--Sobic005G115300 Sobic006G229100--Sobic001G360500 Sobic006G229100--Sobic001G503000 Sobic006G229100--Sobic003G287200 Sobic006G229100--Sobic010G096700 Sobic006G135300 Sobic006G135300 Sobic006G229100--Sobic006G135300 Sobic001G149400 Sobic001G149400 Sobic006G229100--Sobic001G149400 Sobic002G254900 Sobic002G254900 Sobic001G002800--Sobic002G254900 Sobic001G002800--Sobic001G503000 Sobic001G002800--Sobic007G090472 Sobic001G002800--Sobic003G287200 Sobic005G107500 Sobic005G107500 Sobic001G002800--Sobic005G107500 Sobic006G209000 Sobic006G209000 Sobic001G002800--Sobic006G209000 Sobic001G002800--Sobic010G096700 Sobic007G073000 Sobic007G073000 Sobic001G002800--Sobic007G073000 Sobic001G506600 Sobic001G506600 Sobic001G002800--Sobic001G506600 Sobic001G360500--Sobic007G090472 Sobic001G360500--Sobic010G082000 Sobic001G360500--Sobic007G073000 Sobic002G101400 Sobic002G101400 Sobic001G360500--Sobic002G101400 Sobic007G057400 Sobic007G057400 Sobic001G360500--Sobic007G057400 Sobic006G092700 Sobic006G092700 Sobic001G360500--Sobic006G092700 Sobic001G360500--Sobic006G229100 Sobic006G003600 Sobic006G003600 Sobic001G360500--Sobic006G003600 Sobic003G322100 Sobic003G322100 Sobic001G360500--Sobic003G322100 Sobic001G503000--Sobic001G506600 Sobic001G503000--Sobic010G096700 Sobic001G503000--Sobic005G115300 Sobic003G215300 Sobic003G215300 Sobic001G503000--Sobic003G215300 Sobic005G104200 Sobic005G104200 Sobic001G503000--Sobic005G104200 Sobic001G503000--Sobic006G209000 Sobic008G138900 Sobic008G138900 Sobic001G503000--Sobic008G138900 Sobic001G503000--Sobic010G082000 Sobic004G322000 Sobic004G322000 Sobic001G503000--Sobic004G322000 Sobic010G028100 Sobic010G028100 Sobic007G090472--Sobic010G028100 Sobic007G090472--Sobic007G073000 Sobic007G090472--Sobic001G360500 Sobic007G090472--Sobic010G082000 Sobic007G090472--Sobic006G092700 Sobic007G090472--Sobic006G135300 Sobic007G090472--Sobic006G229100 Sobic007G090472--Sobic001G503000 Sobic007G090472--Sobic003G215300 Sobic010G096700--Sobic001G506600 Sobic010G096700--Sobic001G503000 Sobic010G096700--Sobic006G209000 Sobic010G096700--Sobic004G322000 Sobic010G096700--Sobic003G215300 Sobic010G096700--Sobic005G104200 Sobic005G066300 Sobic005G066300 Sobic010G096700--Sobic005G066300 Sobic001G274400 Sobic001G274400 Sobic010G096700--Sobic001G274400 Sobic010G096700--Sobic005G115300 Sobic007G015200 Sobic007G015200 Sobic007G170300--Sobic007G015200 Sobic007G170300--Sobic002G101400 Sobic005G046700 Sobic005G046700 Sobic007G170300--Sobic005G046700 Sobic003G203600 Sobic003G203600 Sobic007G170300--Sobic003G203600 Sobic007G170300--Sobic006G028400 Sobic007G170300--Sobic006G183900 Sobic007G170300--Sobic007G073000 Sobic002G185800 Sobic002G185800 Sobic007G170300--Sobic002G185800 Sobic007G170300--Sobic003G287200 Sobic006G117500--Sobic005G104200 Sobic010G274400 Sobic010G274400 Sobic006G117500--Sobic010G274400 Sobic004G108800 Sobic004G108800 Sobic006G117500--Sobic004G108800 Sobic006G117500--Sobic001G506600 Sobic009G015166 Sobic009G015166 Sobic006G117500--Sobic009G015166 Sobic006G117500--Sobic005G066300 Sobic006G117500--Sobic010G096700 Sobic006G205500 Sobic006G205500 Sobic006G117500--Sobic006G205500 Sobic002G163200 Sobic002G163200 Sobic006G117500--Sobic002G163200
Octagon: transcription factors


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