Gene annotation
Transcriptome id Sobic.004G126700.1
Synonym Sb04g010760, XTH12, AtXTH12
Functional annotation glycosyl hydrolases family 16, putative, expressed
UniProt C5Y033
Pfam PF06955 PF00722
Panther DB PTHR31062 PTHR31062:SF24
NCBI CDD -
KEGG Orthology K08235; xyloglucan:xyloglucosyl transferase
Gene Ontology GO:0016762; xyloglucan:xyloglucosyl transferase activity GO:0006073cellular glucan metabolic process GO:0005618cell wall GO:0005975carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT5G57530 : xyloglucan endotransglucosylase/hydrolase 12
RAP-DB (Rice) LOC_Os02g17880.1 : glycosyl hydrolases family 16, putative, expressed
MaizeGDB (Corn) Zm00025a036323 , Zm00025a018309 , Zm00025a018308 , Zm00025a019784 , Zm00025a034364 , Zm00025a033566 , Zm00025a018310 , Zm00025a050765 , Zm00025a056955
Brachypodium KQK17339 , KQK17338 , KQJ94401 , KQJ94399 , KQJ84411 , KQJ84413 , KQJ84414 , KQJ97550 , KQK17340 , KQK17341 , KQJ88316
Barley HORVU0Hr1G022110.1 , HORVU2Hr1G014530.1 , HORVU2Hr1G111060.2 , HORVU2Hr1G014530.3 , HORVU2Hr1G014530.2 , HORVU7Hr1G081740.1 , HORVU7Hr1G098330.6 , HORVU7Hr1G098330.4 , HORVU7Hr1G098330.5 , HORVU7Hr1G098330.2 , HORVU2Hr1G110980.2 , HORVU2Hr1G110980.1 , HORVU7Hr1G098330.1 , HORVU2Hr1G111090.1 , HORVU7Hr1G098280.2 , HORVU7Hr1G098280.3 , HORVU7Hr1G098280.1 , HORVU7Hr1G098440.1 , HORVU7Hr1G098440.2 , HORVU7Hr1G098440.3 , HORVU7Hr1G098440.4 , HORVU7Hr1G098440.5 , HORVU7Hr1G098440.6 , HORVU7Hr1G098320.2 , HORVU2Hr1G111060.1 , HORVU7Hr1G098370.2 , HORVU7Hr1G098370.3 , HORVU7Hr1G098370.1 , HORVU7Hr1G098370.4 , HORVU2Hr1G111030.8 , HORVU2Hr1G111030.9 , HORVU2Hr1G111030.4 , HORVU2Hr1G111030.5 , HORVU2Hr1G111030.6 , HORVU2Hr1G111030.7 , HORVU2Hr1G111030.1 , HORVU2Hr1G111030.2 , HORVU2Hr1G111030.3 , HORVU7Hr1G098390.1 , HORVU7Hr1G098390.2 , HORVU7Hr1G098390.3 , HORVU7Hr1G098390.4 , HORVU7Hr1G098320.3 , HORVU7Hr1G098260.1 , HORVU7Hr1G098260.2 , HORVU7Hr1G098260.3 , HORVU2Hr1G101150.2 , HORVU2Hr1G101150.3 , HORVU2Hr1G101150.1 , HORVU2Hr1G101150.4
Wheat TraesCS2A02G498200 , TraesCS7D02G418600 , TraesCS7D02G418600 , TraesCS7D02G418600 , TraesCS2A02G498400 , TraesCS7B02G326900 , TraesCS7B02G327200 , TraesCS7D02G419300 , TraesCS2D02G498400 , TraesCS2B02G526600 , TraesCS2B02G526500 , TraesCS7B02G327400 , TraesCS7B02G327700 , TraesCS7D02G339400 , TraesCS2D02G086800 , TraesCS7B02G327000 , TraesCS7A02G426900 , TraesCS2D02G498500 , TraesCS2D02G498600 , TraesCS7B02G242900 , TraesCS2D02G431800 , TraesCS7A02G427600 , TraesCS7A02G426100 , TraesCS7D02G418700 , TraesCS2A02G089000 , TraesCS7A02G427000 , TraesCS7B02G327500 , TraesCS2B02G104700 , TraesCS2B02G454800 , TraesCS7D02G419200 , TraesCS2A02G433500 , TraesCS2D02G498800 , TraesCS7D02G419600 , TraesCS7A02G427100 , TraesCS2B02G454500 , TraesCS7D02G419400 , TraesCS7A02G426600 , TraesCS7A02G426700 , TraesCS2D02G431500 , TraesCS7A02G427300 , TraesCS2A02G498500 , TraesCS2D02G498700 , TraesCS7A02G427200 , TraesCS7D02G419900 , TraesCS2A02G498300 , TraesCS7A02G331200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G287200 WRKY23, expressed -
2 Sobic.001G026300 sex determination protein tasselseed-2, putative, expressed -
3 Sobic.005G089200 gibberellin receptor GID1L2, putative, expressed -
4 Sobic.010G170300 Os9bglu31 - beta-glucosidase, dhurrinase, similar to G. max hydroxyisourate hydrolase, expressed K01188: beta-glucosidase
5 Sobic.006G183900 cytochrome P450, putative, expressed -
6 Sobic.006G229100 receptor-like kinase, putative, expressed -
7 Sobic.008G034700 phytosulfokines precursor, putative, expressed -
8 Sobic.005G149600 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@cytochrome P450, putative, expressed -
9 Sobic.001G108000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@maf, putative, expressed K06287: septum formation protein
10 Sobic.006G074200 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@"uncharacterized lipid transporters, up-regulated under drought stress, mapped into a QTL involved in stay green (QSTG18_3)"(PubMedID : 24655390)@LTPL102 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
11 Sobic.010G151200 GRF zinc finger family protein, expressed -
12 Sobic.007G165400 DNA binding protein, putative, expressed -
13 Sobic.003G015300 expressed protein -
14 Sobic.008G048400 citrate-binding protein precursor, putative, expressed -
15 Sobic.004G248500 GDSL-like lipase/acylhydrolase, putative, expressed -
16 Sobic.004G034200 STRUBBELIG-RECEPTOR FAMILY 1 precursor, putative, expressed -
17 Sobic.005G066000 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
18 Sobic.007G170300 beta,beta-carotene 9,10-dioxygenase, putative, expressed K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase
19 Sobic.003G121500 expressed protein -
20 Sobic.006G117500 polygalacturonase inhibitor 1 precursor, putative, expressed -


Gene co-expression network
sample Sobic004G126700 Sobic004G126700 Sobic003G287200 Sobic003G287200 Sobic004G126700--Sobic003G287200 Sobic001G026300 Sobic001G026300 Sobic004G126700--Sobic001G026300 Sobic005G089200 Sobic005G089200 Sobic004G126700--Sobic005G089200 Sobic010G170300 Sobic010G170300 Sobic004G126700--Sobic010G170300 Sobic006G183900 Sobic006G183900 Sobic004G126700--Sobic006G183900 Sobic006G229100 Sobic006G229100 Sobic004G126700--Sobic006G229100 Sobic008G034700 Sobic008G034700 Sobic004G126700--Sobic008G034700 Sobic005G149600 Sobic005G149600 Sobic004G126700--Sobic005G149600 Sobic001G108000 Sobic001G108000 Sobic004G126700--Sobic001G108000 Sobic003G287200--Sobic006G183900 Sobic003G287200--Sobic006G229100 Sobic001G002800 Sobic001G002800 Sobic003G287200--Sobic001G002800 Sobic001G360500 Sobic001G360500 Sobic003G287200--Sobic001G360500 Sobic001G503000 Sobic001G503000 Sobic003G287200--Sobic001G503000 Sobic007G090472 Sobic007G090472 Sobic003G287200--Sobic007G090472 Sobic010G096700 Sobic010G096700 Sobic003G287200--Sobic010G096700 Sobic007G170300 Sobic007G170300 Sobic003G287200--Sobic007G170300 Sobic006G117500 Sobic006G117500 Sobic003G287200--Sobic006G117500 Sobic001G026300--Sobic005G149600 Sobic001G026300--Sobic005G089200 Sobic003G015200 Sobic003G015200 Sobic001G026300--Sobic003G015200 Sobic004G034200 Sobic004G034200 Sobic001G026300--Sobic004G034200 Sobic004G108800 Sobic004G108800 Sobic001G026300--Sobic004G108800 Sobic007G156800 Sobic007G156800 Sobic001G026300--Sobic007G156800 Sobic001G026300--Sobic010G170300 Sobic001G026300--Sobic004G126700 Sobic001G464300 Sobic001G464300 Sobic001G026300--Sobic001G464300 Sobic005G089200--Sobic005G149600 Sobic005G089200--Sobic004G108800 Sobic005G089200--Sobic001G026300 Sobic005G152500 Sobic005G152500 Sobic005G089200--Sobic005G152500 Sobic005G089200--Sobic003G015200 Sobic005G089200--Sobic006G117500 Sobic005G089200--Sobic010G170300 Sobic005G089200--Sobic007G156800 Sobic005G089200--Sobic004G034200 Sobic010G170300--Sobic005G089200 Sobic002G107400 Sobic002G107400 Sobic010G170300--Sobic002G107400 Sobic010G170300--Sobic005G149600 Sobic010G170300--Sobic003G015200 Sobic010G170300--Sobic001G026300 Sobic010G170300--Sobic005G152500 Sobic010G170300--Sobic004G126700 Sobic010G170300--Sobic006G117500 Sobic010G170300--Sobic003G287200 Sobic006G183900--Sobic003G287200 Sobic007G109600 Sobic007G109600 Sobic006G183900--Sobic007G109600 Sobic006G028400 Sobic006G028400 Sobic006G183900--Sobic006G028400 Sobic006G183900--Sobic007G090472 Sobic006G183900--Sobic008G034700 Sobic004G248500 Sobic004G248500 Sobic006G183900--Sobic004G248500 Sobic006G183900--Sobic007G170300 Sobic002G365600 Sobic002G365600 Sobic006G183900--Sobic002G365600 Sobic002G365500 Sobic002G365500 Sobic006G183900--Sobic002G365500 Sobic006G229100--Sobic007G090472 Sobic010G082000 Sobic010G082000 Sobic006G229100--Sobic010G082000 Sobic005G115300 Sobic005G115300 Sobic006G229100--Sobic005G115300 Sobic006G229100--Sobic001G360500 Sobic006G229100--Sobic001G503000 Sobic006G229100--Sobic003G287200 Sobic006G229100--Sobic010G096700 Sobic006G135300 Sobic006G135300 Sobic006G229100--Sobic006G135300 Sobic001G149400 Sobic001G149400 Sobic006G229100--Sobic001G149400 Sobic008G034700--Sobic006G183900 Sobic008G034700--Sobic007G109600 Sobic008G034700--Sobic002G365600 Sobic008G048400 Sobic008G048400 Sobic008G034700--Sobic008G048400 Sobic003G269500 Sobic003G269500 Sobic008G034700--Sobic003G269500 Sobic005G041300 Sobic005G041300 Sobic008G034700--Sobic005G041300 Sobic009G073800 Sobic009G073800 Sobic008G034700--Sobic009G073800 Sobic008G034700--Sobic004G126700 Sobic008G034700--Sobic002G365500 Sobic005G149600--Sobic005G089200 Sobic005G149600--Sobic004G108800 Sobic005G149600--Sobic001G026300 Sobic005G149600--Sobic003G015200 Sobic005G149600--Sobic006G117500 Sobic004G156250 Sobic004G156250 Sobic005G149600--Sobic004G156250 Sobic005G149600--Sobic005G152500 Sobic005G149600--Sobic007G156800 Sobic005G149600--Sobic004G034200 Sobic001G108000--Sobic006G229100 Sobic001G108000--Sobic004G126700 Sobic007G165400 Sobic007G165400 Sobic001G108000--Sobic007G165400 Sobic003G203600 Sobic003G203600 Sobic001G108000--Sobic003G203600 Sobic001G108000--Sobic003G287200 Sobic001G108000--Sobic006G183900 Sobic002G185800 Sobic002G185800 Sobic001G108000--Sobic002G185800 Sobic001G108000--Sobic007G170300 Sobic010G151200 Sobic010G151200 Sobic001G108000--Sobic010G151200
Octagon: transcription factors


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