Gene annotation
Transcriptome id Sobic.001G108000.1,Sobic.001G108000.2
Synonym Sb01g009640
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
maf, putative, expressed
UniProt A0A1B6QIC8 , A0A1B6QIE3
Pfam PF02545
Panther DB PTHR11746 PTHR11746:SF101
NCBI CDD KOG1509; Predicted nucleic acid-binding protein ASMTL
KEGG Orthology K06287; septum formation protein
Gene Ontology GO:0005737; cytoplasm


Orthologs (automatic annotation)
TAIR AT5G66550 : Maf-like protein
RAP-DB (Rice) LOC_Os03g51479.2 : maf, putative, expressed
MaizeGDB (Corn) Zm00025a016907
Brachypodium -
Barley HORVU4Hr1G009350.1 , HORVU4Hr1G009350.2
Wheat TraesCS4B02G056000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G229100 receptor-like kinase, putative, expressed -
2 Sobic.004G126700 glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
3 Sobic.007G165400 DNA binding protein, putative, expressed -
4 Sobic.003G203600 aldehyde dehydrogenase, putative, expressed K12355: coniferyl-aldehyde dehydrogenase
5 Sobic.003G287200 WRKY23, expressed -
6 Sobic.006G183900 cytochrome P450, putative, expressed -
7 Sobic.002G185800 transporter, putative, expressed -
8 Sobic.007G170300 beta,beta-carotene 9,10-dioxygenase, putative, expressed K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase
9 Sobic.010G151200 GRF zinc finger family protein, expressed -
10 Sobic.005G046700 LTPL114 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
11 Sobic.001G055400 WRKY6, expressed -
12 Sobic.007G090472 - -
13 Sobic.006G028400 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
14 Sobic.001G360500 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.005G115300 expressed protein -
16 Sobic.004G312200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@WRKY32, expressed -
17 Sobic.003G015300 expressed protein -
18 Sobic.002G318200 expressed protein -
19 Sobic.001G067100 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
20 Sobic.001G149400 ankyrin repeat domain-containing protein 50, putative, expressed -


Gene co-expression network
sample Sobic001G108000 Sobic001G108000 Sobic006G229100 Sobic006G229100 Sobic001G108000--Sobic006G229100 Sobic004G126700 Sobic004G126700 Sobic001G108000--Sobic004G126700 Sobic007G165400 Sobic007G165400 Sobic001G108000--Sobic007G165400 Sobic003G203600 Sobic003G203600 Sobic001G108000--Sobic003G203600 Sobic003G287200 Sobic003G287200 Sobic001G108000--Sobic003G287200 Sobic006G183900 Sobic006G183900 Sobic001G108000--Sobic006G183900 Sobic002G185800 Sobic002G185800 Sobic001G108000--Sobic002G185800 Sobic007G170300 Sobic007G170300 Sobic001G108000--Sobic007G170300 Sobic010G151200 Sobic010G151200 Sobic001G108000--Sobic010G151200 Sobic007G090472 Sobic007G090472 Sobic006G229100--Sobic007G090472 Sobic010G082000 Sobic010G082000 Sobic006G229100--Sobic010G082000 Sobic005G115300 Sobic005G115300 Sobic006G229100--Sobic005G115300 Sobic001G360500 Sobic001G360500 Sobic006G229100--Sobic001G360500 Sobic001G503000 Sobic001G503000 Sobic006G229100--Sobic001G503000 Sobic006G229100--Sobic003G287200 Sobic010G096700 Sobic010G096700 Sobic006G229100--Sobic010G096700 Sobic006G135300 Sobic006G135300 Sobic006G229100--Sobic006G135300 Sobic001G149400 Sobic001G149400 Sobic006G229100--Sobic001G149400 Sobic004G126700--Sobic003G287200 Sobic001G026300 Sobic001G026300 Sobic004G126700--Sobic001G026300 Sobic005G089200 Sobic005G089200 Sobic004G126700--Sobic005G089200 Sobic010G170300 Sobic010G170300 Sobic004G126700--Sobic010G170300 Sobic004G126700--Sobic006G183900 Sobic004G126700--Sobic006G229100 Sobic008G034700 Sobic008G034700 Sobic004G126700--Sobic008G034700 Sobic005G149600 Sobic005G149600 Sobic004G126700--Sobic005G149600 Sobic004G126700--Sobic001G108000 Sobic007G165400--Sobic002G185800 Sobic007G165400--Sobic003G203600 Sobic003G015300 Sobic003G015300 Sobic007G165400--Sobic003G015300 Sobic001G067100 Sobic001G067100 Sobic007G165400--Sobic001G067100 Sobic007G176000 Sobic007G176000 Sobic007G165400--Sobic007G176000 Sobic001G264000 Sobic001G264000 Sobic007G165400--Sobic001G264000 Sobic010G110800 Sobic010G110800 Sobic007G165400--Sobic010G110800 Sobic006G197100 Sobic006G197100 Sobic007G165400--Sobic006G197100 Sobic002G001700 Sobic002G001700 Sobic007G165400--Sobic002G001700 Sobic003G203600--Sobic001G067100 Sobic002G195600 Sobic002G195600 Sobic003G203600--Sobic002G195600 Sobic003G203600--Sobic006G135300 Sobic003G203600--Sobic010G082000 Sobic003G426500 Sobic003G426500 Sobic003G203600--Sobic003G426500 Sobic006G028400 Sobic006G028400 Sobic003G203600--Sobic006G028400 Sobic006G092700 Sobic006G092700 Sobic003G203600--Sobic006G092700 Sobic003G203600--Sobic007G170300 Sobic004G038700 Sobic004G038700 Sobic003G203600--Sobic004G038700 Sobic003G287200--Sobic006G183900 Sobic003G287200--Sobic006G229100 Sobic001G002800 Sobic001G002800 Sobic003G287200--Sobic001G002800 Sobic003G287200--Sobic001G360500 Sobic003G287200--Sobic001G503000 Sobic003G287200--Sobic007G090472 Sobic003G287200--Sobic010G096700 Sobic003G287200--Sobic007G170300 Sobic006G117500 Sobic006G117500 Sobic003G287200--Sobic006G117500 Sobic006G183900--Sobic003G287200 Sobic007G109600 Sobic007G109600 Sobic006G183900--Sobic007G109600 Sobic006G183900--Sobic006G028400 Sobic006G183900--Sobic007G090472 Sobic006G183900--Sobic008G034700 Sobic004G248500 Sobic004G248500 Sobic006G183900--Sobic004G248500 Sobic006G183900--Sobic007G170300 Sobic002G365600 Sobic002G365600 Sobic006G183900--Sobic002G365600 Sobic002G365500 Sobic002G365500 Sobic006G183900--Sobic002G365500 Sobic005G046700 Sobic005G046700 Sobic002G185800--Sobic005G046700 Sobic004G139300 Sobic004G139300 Sobic002G185800--Sobic004G139300 Sobic002G216100 Sobic002G216100 Sobic002G185800--Sobic002G216100 Sobic002G185800--Sobic006G197100 Sobic002G185800--Sobic001G264000 Sobic007G178900 Sobic007G178900 Sobic002G185800--Sobic007G178900 Sobic007G176100 Sobic007G176100 Sobic002G185800--Sobic007G176100 Sobic006G256900 Sobic006G256900 Sobic002G185800--Sobic006G256900 Sobic002G185800--Sobic007G176000 Sobic007G015200 Sobic007G015200 Sobic007G170300--Sobic007G015200 Sobic002G101400 Sobic002G101400 Sobic007G170300--Sobic002G101400 Sobic007G170300--Sobic005G046700 Sobic007G170300--Sobic003G203600 Sobic007G170300--Sobic006G028400 Sobic007G170300--Sobic006G183900 Sobic007G073000 Sobic007G073000 Sobic007G170300--Sobic007G073000 Sobic007G170300--Sobic002G185800 Sobic007G170300--Sobic003G287200 Sobic010G151200--Sobic003G015300 Sobic010G151200--Sobic007G165400 Sobic010G151200--Sobic004G126700 Sobic005G043000 Sobic005G043000 Sobic010G151200--Sobic005G043000 Sobic010G151200--Sobic010G110800 Sobic010G151200--Sobic001G108000 Sobic010G151200--Sobic007G170300 Sobic010G151200--Sobic002G185800 Sobic010G151200--Sobic005G046700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.