Gene annotation
Transcriptome id Sobic.005G041300.2
Synonym ATCAT6, Sb05g003440, CAT6
Functional annotation amino acid permease family protein, putative, expressed
UniProt A0A1Z5RGL0
Pfam PF13906 PF13520
Panther DB PTHR11785 PTHR11785:SF331
NCBI CDD KOG1286; Amino acid transporters
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0015171amino acid transmembrane transporter activity GO:0003333amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT5G04770 : cationic amino acid transporter 6
RAP-DB (Rice) LOC_Os11g05690.2 : amino acid permease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a033523 , Zm00025a053930 , Zm00025a056650
Brachypodium KQJ83872 , KQJ92187 , KQJ92188
Barley HORVU5Hr1G040540.20 , HORVU5Hr1G040540.2 , HORVU5Hr1G040540.3 , HORVU5Hr1G040540.1 , HORVU5Hr1G040540.6 , HORVU5Hr1G040540.7 , HORVU5Hr1G040540.4 , HORVU5Hr1G040540.5 , HORVU5Hr1G040540.8 , HORVU5Hr1G040540.9 , HORVU0Hr1G016470.1 , HORVU5Hr1G040540.10 , HORVU5Hr1G040540.11 , HORVU5Hr1G040540.12 , HORVU5Hr1G040540.13 , HORVU5Hr1G040540.14 , HORVU5Hr1G040540.15 , HORVU5Hr1G040540.16 , HORVU5Hr1G040540.17 , HORVU5Hr1G040540.18 , HORVU5Hr1G040540.19
Wheat TraesCS5D02G134500 , TraesCS5A02G126900 , TraesCS2B02G409100 , TraesCS5B02G126000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G430100 - -
2 Sobic.004G258900 - -
3 Sobic.008G034700 phytosulfokines precursor, putative, expressed -
4 Sobic.006G183900 cytochrome P450, putative, expressed -
5 Sobic.001G455100 expressed protein -
6 Sobic.010G096400 proteins of unknown function domain containing protein, expressed -
7 Sobic.008G035800 glycosyltransferase, putative, expressed K08238: xyloglucan 6-xylosyltransferase
8 Sobic.004G348800 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
9 Sobic.002G365600 igA FC receptor precursor, putative, expressed -
10 Sobic.010G152400 glycosyltransferase, putative, expressed -
11 Sobic.008G172500 ATCHX, putative, expressed -
12 Sobic.001G307600 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed -
13 Sobic.002G365550 - -
14 Sobic.001G264000 dehydrogenase, putative, expressed K00001: E1.1.1.1, alcohol dehydrogenase
15 Sobic.007G050200 DNA binding protein, putative, expressed -
16 Sobic.003G324600 transcription factor-related, putative, expressed -
17 Sobic.003G205600 uncharacterized protein At4g06744 precursor, putative, expressed -
18 Sobic.004G322100 hypro1, putative, expressed -
19 Sobic.009G221500 lipid phosphatase protein, putative, expressed -
20 Sobic.002G185800 transporter, putative, expressed -


Gene co-expression network
sample Sobic005G041300 Sobic005G041300 Sobic001G430100 Sobic001G430100 Sobic005G041300--Sobic001G430100 Sobic004G258900 Sobic004G258900 Sobic005G041300--Sobic004G258900 Sobic008G034700 Sobic008G034700 Sobic005G041300--Sobic008G034700 Sobic006G183900 Sobic006G183900 Sobic005G041300--Sobic006G183900 Sobic001G455100 Sobic001G455100 Sobic005G041300--Sobic001G455100 Sobic010G096400 Sobic010G096400 Sobic005G041300--Sobic010G096400 Sobic008G035800 Sobic008G035800 Sobic005G041300--Sobic008G035800 Sobic004G348800 Sobic004G348800 Sobic005G041300--Sobic004G348800 Sobic002G365600 Sobic002G365600 Sobic005G041300--Sobic002G365600 Sobic002G183700 Sobic002G183700 Sobic001G430100--Sobic002G183700 Sobic003G311800 Sobic003G311800 Sobic001G430100--Sobic003G311800 Sobic007G050200 Sobic007G050200 Sobic001G430100--Sobic007G050200 Sobic001G049900 Sobic001G049900 Sobic001G430100--Sobic001G049900 Sobic002G001700 Sobic002G001700 Sobic001G430100--Sobic002G001700 Sobic001G430100--Sobic004G348800 Sobic004G297900 Sobic004G297900 Sobic001G430100--Sobic004G297900 Sobic006G197100 Sobic006G197100 Sobic001G430100--Sobic006G197100 Sobic009G109000 Sobic009G109000 Sobic001G430100--Sobic009G109000 Sobic004G258900--Sobic007G050200 Sobic004G258900--Sobic005G041300 Sobic002G216100 Sobic002G216100 Sobic004G258900--Sobic002G216100 Sobic004G258900--Sobic001G430100 Sobic005G065900 Sobic005G065900 Sobic004G258900--Sobic005G065900 Sobic002G404100 Sobic002G404100 Sobic004G258900--Sobic002G404100 Sobic009G221500 Sobic009G221500 Sobic004G258900--Sobic009G221500 Sobic002G101400 Sobic002G101400 Sobic004G258900--Sobic002G101400 Sobic010G148800 Sobic010G148800 Sobic004G258900--Sobic010G148800 Sobic008G034700--Sobic006G183900 Sobic007G109600 Sobic007G109600 Sobic008G034700--Sobic007G109600 Sobic008G034700--Sobic002G365600 Sobic008G048400 Sobic008G048400 Sobic008G034700--Sobic008G048400 Sobic003G269500 Sobic003G269500 Sobic008G034700--Sobic003G269500 Sobic008G034700--Sobic005G041300 Sobic009G073800 Sobic009G073800 Sobic008G034700--Sobic009G073800 Sobic004G126700 Sobic004G126700 Sobic008G034700--Sobic004G126700 Sobic002G365500 Sobic002G365500 Sobic008G034700--Sobic002G365500 Sobic003G287200 Sobic003G287200 Sobic006G183900--Sobic003G287200 Sobic006G183900--Sobic007G109600 Sobic006G028400 Sobic006G028400 Sobic006G183900--Sobic006G028400 Sobic007G090472 Sobic007G090472 Sobic006G183900--Sobic007G090472 Sobic006G183900--Sobic008G034700 Sobic004G248500 Sobic004G248500 Sobic006G183900--Sobic004G248500 Sobic007G170300 Sobic007G170300 Sobic006G183900--Sobic007G170300 Sobic006G183900--Sobic002G365600 Sobic006G183900--Sobic002G365500 Sobic007G154200 Sobic007G154200 Sobic001G455100--Sobic007G154200 Sobic008G099100 Sobic008G099100 Sobic001G455100--Sobic008G099100 Sobic008G135300 Sobic008G135300 Sobic001G455100--Sobic008G135300 Sobic001G455100--Sobic010G148800 Sobic001G522700 Sobic001G522700 Sobic001G455100--Sobic001G522700 Sobic003G322100 Sobic003G322100 Sobic001G455100--Sobic003G322100 Sobic002G365550 Sobic002G365550 Sobic001G455100--Sobic002G365550 Sobic001G455100--Sobic010G096400 Sobic001G455100--Sobic009G221500 Sobic008G055100 Sobic008G055100 Sobic010G096400--Sobic008G055100 Sobic004G139300 Sobic004G139300 Sobic010G096400--Sobic004G139300 Sobic010G096400--Sobic002G365550 Sobic002G365801 Sobic002G365801 Sobic010G096400--Sobic002G365801 Sobic009G088500 Sobic009G088500 Sobic010G096400--Sobic009G088500 Sobic010G096400--Sobic002G216100 Sobic001G360500 Sobic001G360500 Sobic010G096400--Sobic001G360500 Sobic002G368300 Sobic002G368300 Sobic010G096400--Sobic002G368300 Sobic007G176000 Sobic007G176000 Sobic010G096400--Sobic007G176000 Sobic003G240400 Sobic003G240400 Sobic008G035800--Sobic003G240400 Sobic003G282300 Sobic003G282300 Sobic008G035800--Sobic003G282300 Sobic007G090600 Sobic007G090600 Sobic008G035800--Sobic007G090600 Sobic004G322000 Sobic004G322000 Sobic008G035800--Sobic004G322000 Sobic009G208700 Sobic009G208700 Sobic008G035800--Sobic009G208700 Sobic010G152400 Sobic010G152400 Sobic008G035800--Sobic010G152400 Sobic003G140200 Sobic003G140200 Sobic008G035800--Sobic003G140200 Sobic004G271800 Sobic004G271800 Sobic008G035800--Sobic004G271800 Sobic010G082000 Sobic010G082000 Sobic008G035800--Sobic010G082000 Sobic001G264000 Sobic001G264000 Sobic004G348800--Sobic001G264000 Sobic005G215400 Sobic005G215400 Sobic004G348800--Sobic005G215400 Sobic010G212500 Sobic010G212500 Sobic004G348800--Sobic010G212500 Sobic004G348800--Sobic001G430100 Sobic002G003800 Sobic002G003800 Sobic004G348800--Sobic002G003800 Sobic004G348800--Sobic006G197100 Sobic004G348800--Sobic009G109000 Sobic004G348800--Sobic003G311800 Sobic004G348800--Sobic007G050200 Sobic002G365600--Sobic002G365550 Sobic002G365600--Sobic003G269500 Sobic002G365600--Sobic002G365500 Sobic008G172500 Sobic008G172500 Sobic002G365600--Sobic008G172500 Sobic002G365600--Sobic006G183900 Sobic004G071000 Sobic004G071000 Sobic002G365600--Sobic004G071000 Sobic002G365600--Sobic002G365801 Sobic001G364400 Sobic001G364400 Sobic002G365600--Sobic001G364400 Sobic002G365600--Sobic010G212500
Octagon: transcription factors


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